Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00117

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Reverse (-)

26537 .. 30645

Gene Structure 4109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACTATTTTCAATCTCGTCAAGTCCGAATGGTCCGTGGGCCTTTGTCATTGCTACAAAGATATCCCTACATGTTGCATAACATGCCTTCTCCTATGTGTCACCTTCGGCCGAATTGCAGAAATTCATGCTTTAAATAACCAAGGCTGCGTGTATGGGTTGTTGATGATGGTTCAATGTCAATGGCTCTATTCATGCATCTATAGAGAGAAGCTGCGCAAAAAATTCTGTTTAGCAGACCACTGCGAATTATGTGCCCTTTGTCAAGAGCACGCCGAGCTCAAAGCTAGAGGTTTTGATCCCTCCAAAGGTATATATGTGCAATTCTTCATTAATCAATATACCATTGTAATCATATTCCCGTGTTTACATATGCATTTCTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

131

Amino Acids

15.25

Weight (kDa)

8.19

Isoelectric Point (pI)

16.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	11 - 93	8.2e-15	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	218
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	123, 224
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	13, 176
AluBI	AGCT	3 cut(s)	214, 280, 287
AluI	AGCT	3 cut(s)	214, 280, 287
Alw21I	GWGCWC	2 cut(s)	273, 282
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	40, 109
ApeKI	GCWGC	2 cut(s)	147, 214
ApoI	RAATTY	2 cut(s)	123, 224
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	33, 40
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	273, 282
BbvI	GCAGC	2 cut(s)	134, 201
BccI	CCATC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	2 cut(s)	148, 215
BlsI	GCNGC	2 cut(s)	149, 216
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 40
BmsI	GCATC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	36, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	36, 142
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	259
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	134, 201
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	42, 111
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	273, 282
BslI	CCNNNNNNNGG	1 cut(s)	308
BsnI	GGCC	2 cut(s)	42, 111
Bsp1286I	GDGCHC	3 cut(s)	259, 273, 282
Bsp143I	GATC	1 cut(s)	298
BspANI	GGCC	2 cut(s)	42, 111
BspPI	GGATC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	36, 142
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 277
BstNSI	RCATGY	2 cut(s)	75, 87
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	134, 201
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	42, 111
BtgI	CCRYGG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	33, 40
CviAII	CATG	5 cut(s)	72, 84, 128, 195, 385
CviJI	RGCY	7 cut(s)	42, 111, 147, 187, 214, 280, 287
CviKI_1	RGCY	7 cut(s)	42, 111, 147, 187, 214, 280, 287
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraI	TTTAAA	2 cut(s)	135, 391
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	142
EcoT22I	ATGCAT	2 cut(s)	200, 378
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	5 cut(s)	75, 87, 131, 198, 388
FatI	CATG	5 cut(s)	71, 83, 127, 194, 384
FauNDI	CATATG	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	148, 215
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	148, 215
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	148, 215
HaeIII	GGCC	2 cut(s)	42, 111
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	5 cut(s)	75, 87, 131, 198, 388
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	98, 115
HpyCH4V	TGCA	5 cut(s)	78, 119, 198, 322, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 277
Hsp92II	CATG	5 cut(s)	75, 87, 131, 198, 388
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	134, 201
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	319
MhlI	GDGCHC	3 cut(s)	259, 273, 282
MluCI	AATT	5 cut(s)	114, 123, 224, 248, 323
MnlI	CCTC	2 cut(s)	284, 313
Mph1103I	ATGCAT	2 cut(s)	200, 378
MseI	TTAA	3 cut(s)	134, 333, 390
MwoI	GCNNNNNNNGC	2 cut(s)	84, 277
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	5 cut(s)	75, 87, 131, 198, 388
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	100
NsbI	TGCGCA	1 cut(s)	218
NsiI	ATGCAT	2 cut(s)	200, 378
NspI	RCATGY	2 cut(s)	75, 87
PciI	ACATGT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	149, 216
PscI	ACATGT	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	33, 40
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	134, 333, 390
SatI	GCNGC	2 cut(s)	148, 215
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	33, 40
SduI	GDGCHC	3 cut(s)	259, 273, 282
SetI	ASST	6 cut(s)	107, 216, 282, 289, 295, 313
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	114, 123, 224, 248, 323
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	142
TasI	AATT	5 cut(s)	114, 123, 224, 248, 323
Tru1I	TTAA	3 cut(s)	134, 333, 390
Tru9I	TTAA	3 cut(s)	134, 333, 390
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	147, 214
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	116, 183, 319
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	2 cut(s)	123, 224
XceI	RCATGY	2 cut(s)	75, 87
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	2 cut(s)	200, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.