Rh7AG076900

Protein PLANT CADMIUM RESISTANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000960
Physical Location & Seq
Reverse (-)
5503050 .. 5504790
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG076900.1

Sequence Viewer

Length: 1323 bp
ATGGAGGATGATCATCACACTCCAAATTACGAAGACCACCCCCACGATAATCAACCTGAAGCTCATGTGGAGGTACAAGTCGAACAATATCAATATCAACAAGTAGCGCTTGAAATTAGCGACAATAGTGGAAACTACGACCAAAACCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCCACCTCAGTATCAGCCACAACCTCCACCACAAGGAGGCCAACAACAACAACAGTTCTTCCAGCAGCAGCAGCAGCCGCCGCCGCCGCGTCAACCATCTTATCAGCCGCCTGTACAATTCCCACCACAACAACCACCACCGCGGCCGATCCAATACTTGGCTCCACAGCCGCCTCGCCCTGTGCCATTCCCTCCTCAGAGCCCACAAAACCAAAAGTACGCAAACCAGCCTCCTCCTCCAGGACCTACACAACAGTTCCCACCGCAAAACCCTCAGTTTCAAGCTCAACAGCCACCTTATCAGCCACAGCCACCTCTACAGTTTCCACCACAGAATGCGACCCCTAACCAACAAAACAACCCTTTTGGACAACCACCTTCTCCGGCAAAATATCCTCCGCAACCACCTTCTCCGGTGAAATATCCTCCACAACCACCATCTCCGGTACAATATCCTCCTGCAGCAGGTTCGTCTCAGCCTCCTCAAGGCTACAATGACATTCCCCAACCTTCAAAGCAGCATCAAGCGCCGCCTCCGGTGCAAGTGGGCTATAATAAGCCTCAGCCACCCCAACAGTACCACCAGCAGCAACAATACCAACCACAACCACCACAGCAGAATCATTATGCGGCTGCTCCTTCTCCGGCTCAAGGAGTTCCGATGCAGGCCCCTTACGGGCCGCAGGGAACGCCTATGACTATGAATATGATGAACCCGATTGGCACTGAGGCTTGGAAAACCGGGCTCTTTGATTGCATGGATGATCCTAATAATGCTCTCATAACGTTATTCGTACCATGCTTGACTTTCGGCCAGATAGCAGAAGTTGTGGATAATGGCACTACCTCATGTGGTACGAGCGCATTGCTGTACGGCTTGGTTGGAGCGTTCATCGGAGTGCCATTCATAATGTCATGCACTTATCGCACGAAGATTCGGAGCAAGTATGGGTTAGTTGAGACCCCTGCACCTGACTGGGTCACCCATTTGTTTTGCGAGCCATGTTCTCTTTGCCAAGAGTACAGAGAACTTAATTTGAGAGGGCTAGACCCTTCTATAGGATGGCAAGGAAATGTGGCAAGGGCCATGCAGCAGCAACAACCTAAGATGATGACGCCTCCAGTGAACCAAATGATGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

440

Amino Acids

49.4

Weight (kDa)

5.67

Isoelectric Point (pI)

82.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 305 - 403 3.1e-31 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 635
AccB7I CCANNNNNTGG 1 cut(s) 337
AccII CGCG 2 cut(s) 268, 322
AclI AACGTT 1 cut(s) 965
AclWI GGATC 2 cut(s) 322, 938
AcoI YGGCCR 2 cut(s) 323, 991
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 1295
AfaI GTAC 9 cut(s) 75, 294, 398, 627, 758, 975, 1036, 1052, 1202
AfeI AGCGCT 1 cut(s) 108
AfiI CCNNNNNNNGG 9 cut(s) 212, 215, 337, 419, 644, 665, 830, 855, 1238
AgsI TTSAA 3 cut(s) 113, 461, 693
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 2 cut(s) 62, 464
AluI AGCT 2 cut(s) 62, 464
Alw26I GTCTC 2 cut(s) 657, 1133
AlwI GGATC 2 cut(s) 322, 938
Aor51HI AGCGCT 1 cut(s) 108
AoxI GGCC 6 cut(s) 217, 323, 846, 857, 991, 1263
AspLEI GCGC 3 cut(s) 109, 709, 1043
AspS9I GGNCC 4 cut(s) 422, 847, 857, 1263
AsuC2I CCSGG 1 cut(s) 922
AsuHPI GGTGA 2 cut(s) 607, 1153
AvaII GGWCC 1 cut(s) 422
BaeI ACNNNNGTAYC 2 cut(s) 173, 206
BanII GRGCYC 2 cut(s) 383, 927
BbsI GAAGAC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 741
BccI CCATC 3 cut(s) 283, 625, 1236
BceAI ACGGC 1 cut(s) 1069
BcgI CGANNNNNNTGC 4 cut(s) 630, 664, 1027, 1061
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 922
BcoDI GTCTC 2 cut(s) 657, 1133
BfaI CTAG 1 cut(s) 1226
BfmI CTRYAG 3 cut(s) 497, 639, 1236
BfoI RGCGCY 2 cut(s) 110, 710
BfuAI ACCTGC 1 cut(s) 635
Bme1390I CCNGG 2 cut(s) 420, 922
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 4 cut(s) 422, 847, 857, 1263
BmiI GGNNCC 2 cut(s) 342, 849
BmrFI CCNGG 2 cut(s) 420, 922
BmrI ACTGGG 1 cut(s) 1165
BmsI GCATC 2 cut(s) 709, 831
BmuI ACTGGG 1 cut(s) 1165
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 2 cut(s) 402, 1284
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 648, 813
BpuMI CCSGG 1 cut(s) 922
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 1295
BsaI GGTCTC 1 cut(s) 1133
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 3 cut(s) 592, 622, 715
Bsc4I CCNNNNNNNGG 9 cut(s) 212, 215, 337, 419, 644, 665, 830, 855, 1238
Bse1I ACTGG 2 cut(s) 1160, 1301
Bse3DI GCAATG 1 cut(s) 1043
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 3 cut(s) 13, 946, 1247
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 9 cut(s) 212, 215, 337, 419, 644, 665, 830, 855, 1238
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 6 cut(s) 200, 389, 467, 668, 755, 897
BseNI ACTGG 2 cut(s) 1160, 1301
BseRI GAGGAG 4 cut(s) 363, 402, 405, 651
BseX3I CGGCCG 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 2 cut(s) 268, 322
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 6 cut(s) 219, 325, 848, 859, 993, 1265
BsiEI CGRYCG 1 cut(s) 326
BsiSI CCGG 6 cut(s) 563, 593, 623, 716, 824, 921
BslI CCNNNNNNNGG 9 cut(s) 212, 215, 337, 419, 644, 665, 830, 855, 1238
BsmAI GTCTC 2 cut(s) 657, 1133
BsmBI CGTCTC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 6 cut(s) 219, 325, 848, 859, 993, 1265
Bso31I GGTCTC 1 cut(s) 1133
Bsp1286I GDGCHC 2 cut(s) 383, 927
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 3 cut(s) 10, 327, 943
BspANI GGCC 6 cut(s) 219, 325, 848, 859, 993, 1265
BspCNI CTCAG 6 cut(s) 199, 388, 466, 667, 754, 898
BspFNI CGCG 2 cut(s) 268, 322
BspLI GGNNCC 2 cut(s) 342, 849
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 2 cut(s) 322, 938
BspTNI GGTCTC 1 cut(s) 1133
BsrDI GCAATG 1 cut(s) 1043
BsrGI TGTACA 1 cut(s) 292
BsrI ACTGG 2 cut(s) 1160, 1301
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 3 cut(s) 10, 327, 943
BssNI GRCGYC 1 cut(s) 1295
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 4 cut(s) 234, 435, 501, 756
BstACI GRCGYC 1 cut(s) 1295
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 846, 1178
BstDEI CTNAG 7 cut(s) 186, 375, 453, 654, 741, 906, 1284
BstDSI CCRYGG 1 cut(s) 320
BstEII GGTNACC 1 cut(s) 1159
BstENI CCTNNNNNAGG 4 cut(s) 417, 642, 663, 1236
BstF5I GGATG 3 cut(s) 13, 946, 1247
BstFNI CGCG 2 cut(s) 268, 322
BstH2I RGCGCY 2 cut(s) 110, 710
BstHHI GCGC 3 cut(s) 109, 709, 1043
BstKTI GATC 3 cut(s) 13, 330, 946
BstMAI GTCTC 2 cut(s) 657, 1133
BstMBI GATC 3 cut(s) 10, 327, 943
BstMCI CGRYCG 1 cut(s) 326
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 1159
BstSCI CCNGG 2 cut(s) 418, 920
BstSFI CTRYAG 3 cut(s) 497, 639, 1236
BstUI CGCG 2 cut(s) 268, 322
BstV2I GAAGAC 1 cut(s) 39
BstZI CGGCCG 1 cut(s) 323
BsuRI GGCC 6 cut(s) 219, 325, 848, 859, 993, 1265
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 13, 946, 1247
BtsIMutI CAGTG 2 cut(s) 903, 1308
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 846, 1178
CfoI GCGC 3 cut(s) 109, 709, 1043
Cfr13I GGNCC 4 cut(s) 422, 847, 857, 1263
Cfr42I CCGCGG 1 cut(s) 323
CseI GACGC 2 cut(s) 257, 1303
Csp6I GTAC 9 cut(s) 74, 293, 397, 626, 757, 974, 1035, 1051, 1201
CviAII CATG 7 cut(s) 65, 937, 978, 1029, 1095, 1182, 1267
CviQI GTAC 9 cut(s) 74, 293, 397, 626, 757, 974, 1035, 1051, 1201
DdeI CTNAG 7 cut(s) 186, 375, 453, 654, 741, 906, 1284
DpnI GATC 3 cut(s) 12, 329, 945
DpnII GATC 3 cut(s) 10, 327, 943
EaeI YGGCCR 2 cut(s) 323, 991
EagI CGGCCG 1 cut(s) 323
EclXI CGGCCG 1 cut(s) 323
Eco24I GRGCYC 2 cut(s) 383, 927
Eco31I GGTCTC 1 cut(s) 1133
Eco47I GGWCC 1 cut(s) 422
Eco47III AGCGCT 1 cut(s) 108
Eco52I CGGCCG 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 1159
EcoNI CCTNNNNNAGG 4 cut(s) 417, 642, 663, 1236
EcoO109I RGGNCCY 2 cut(s) 422, 847
EcoO65I GGTNACC 1 cut(s) 1159
EcoRII CCWGG 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 383, 927
Esp3I CGTCTC 1 cut(s) 657
FaeI CATG 7 cut(s) 68, 940, 981, 1032, 1098, 1185, 1270
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 7 cut(s) 64, 936, 977, 1028, 1094, 1181, 1266
FbaI TGATCA 1 cut(s) 10
FokI GGATG 3 cut(s) 20, 953, 1254
FriOI GRGCYC 2 cut(s) 383, 927
FspBI CTAG 1 cut(s) 1226
GlaI GCGC 3 cut(s) 108, 708, 1042
GsuI CTGGAG 2 cut(s) 402, 1284
HaeII RGCGCY 2 cut(s) 110, 710
HaeIII GGCC 6 cut(s) 219, 325, 848, 859, 993, 1265
HapII CCGG 6 cut(s) 563, 593, 623, 716, 824, 921
HgaI GACGC 2 cut(s) 257, 1303
HhaI GCGC 3 cut(s) 109, 709, 1043
Hin1I GRCGYC 1 cut(s) 1295
Hin1II CATG 7 cut(s) 68, 940, 981, 1032, 1098, 1185, 1270
Hin6I GCGC 3 cut(s) 107, 707, 1041
HinP1I GCGC 3 cut(s) 107, 707, 1041
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HinfI GANTC 2 cut(s) 799, 1114
HpaII CCGG 6 cut(s) 563, 593, 623, 716, 824, 921
HphI GGTGA 2 cut(s) 607, 1153
Hpy166II GTNNAC 2 cut(s) 272, 1306
Hpy188I TCNGA 4 cut(s) 378, 840, 1076, 1119
Hpy8I GTNNAC 2 cut(s) 272, 1306
HpyAV CCTTC 5 cut(s) 567, 597, 699, 828, 1242
HpyCH4III ACNGT 4 cut(s) 234, 435, 501, 756
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 7 cut(s) 641, 721, 844, 936, 1098, 1148, 1270
HpyF3I CTNAG 7 cut(s) 186, 375, 453, 654, 741, 906, 1284
HpySE526I ACGT 1 cut(s) 965
Hsp92I GRCGYC 1 cut(s) 1295
Hsp92II CATG 7 cut(s) 68, 940, 981, 1032, 1098, 1185, 1270
HspAI GCGC 3 cut(s) 107, 707, 1041
Ksp22I TGATCA 1 cut(s) 10
KspI CCGCGG 1 cut(s) 323
Kzo9I GATC 3 cut(s) 10, 327, 943
LmnI GCTCC 4 cut(s) 346, 820, 1064, 1119
LweI GCATC 2 cut(s) 709, 831
MaeI CTAG 1 cut(s) 1226
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 1 cut(s) 1159
MalI GATC 3 cut(s) 12, 329, 945
MboI GATC 3 cut(s) 10, 327, 943
MboII GAAGA 3 cut(s) 44, 229, 1123
MhlI GDGCHC 2 cut(s) 383, 927
MluCI AATT 4 cut(s) 25, 114, 296, 1213
MmeI TCCRAC 1 cut(s) 1042
MseI TTAA 1 cut(s) 1212
MslI CAYNNNNRTG 1 cut(s) 1076
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 6 cut(s) 563, 593, 623, 716, 824, 921
MspR9I CCNGG 2 cut(s) 420, 922
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 2 cut(s) 268, 322
NciI CCSGG 1 cut(s) 922
NdeII GATC 3 cut(s) 10, 327, 943
NlaIII CATG 7 cut(s) 68, 940, 981, 1032, 1098, 1185, 1270
NlaIV GGNNCC 2 cut(s) 342, 849
NmuCI GTSAC 1 cut(s) 1159
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 2 cut(s) 799, 1114
PflFI GACNNNGTC 1 cut(s) 1157
PflMI CCANNNNNTGG 1 cut(s) 337
PfoI TCCNGGA 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 422
Psp1406I AACGTT 1 cut(s) 965
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 1159
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 342, 849
PspPI GGNCC 4 cut(s) 422, 847, 857, 1263
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 643
PsyI GACNNNGTC 1 cut(s) 1157
RsaI GTAC 9 cut(s) 75, 294, 398, 627, 758, 975, 1036, 1052, 1202
RsaNI GTAC 9 cut(s) 74, 293, 397, 626, 757, 974, 1035, 1051, 1201
RseI CAYNNNNRTG 1 cut(s) 1076
SacII CCGCGG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 1212
Sau3AI GATC 3 cut(s) 10, 327, 943
Sau96I GGNCC 4 cut(s) 422, 847, 857, 1263
ScrFI CCNGG 2 cut(s) 420, 922
SduI GDGCHC 2 cut(s) 383, 927
SfaNI GCATC 2 cut(s) 709, 831
SfcI CTRYAG 3 cut(s) 497, 639, 1236
Sfr303I CCGCGG 1 cut(s) 323
SgrBI CCGCGG 1 cut(s) 323
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 1076
SmlI CTYRAG 2 cut(s) 663, 828
SmoI CTYRAG 2 cut(s) 663, 828
Sse9I AATT 4 cut(s) 25, 114, 296, 1213
SspMI CTAG 1 cut(s) 1226
StyD4I CCNGG 2 cut(s) 418, 920
TaaI ACNGT 4 cut(s) 234, 435, 501, 756
TaiI ACGT 1 cut(s) 968
TaqI TCGA 1 cut(s) 81
TasI AATT 4 cut(s) 25, 114, 296, 1213
TatI WGTACW 2 cut(s) 292, 1200
TfiI GAWTC 2 cut(s) 799, 1114
Tru1I TTAA 1 cut(s) 1212
Tru9I TTAA 1 cut(s) 1212
TscAI CASTG 2 cut(s) 910, 1308
TseFI GTSAC 1 cut(s) 1159
Tsp45I GTSAC 1 cut(s) 1159
TspDTI ATGAA 4 cut(s) 896, 905, 1060, 1075
TspRI CASTG 2 cut(s) 910, 1308
Tth111I GACNNNGTC 1 cut(s) 1157
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 422
XagI CCTNNNNNAGG 4 cut(s) 417, 642, 663, 1236
XspI CTAG 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.