RchiOBHm_Chr4g0394451

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000960
Physical Location & Seq
Forward (+)
10119277 .. 10122475
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36695

Sequence Viewer

Length: 381 bp
ATGACTATTTTCAATCTTGTCAAGTCCGAATGGTCCGTGGGCCTTTGTCATTGCTACAAAGATATCCCTACATGTTGCATAACATGCCTTCTCCCATGTGTCACCTTCGGCCGAATTGCAGAAATTGTAGATAAAGGACGAAGTTGCTGCGTGTATGGGTTGTTGATGATGGTTCAATGTCAATGGCTCTATTCATGCATCTATAGAGAGAAGCTGCGCAAAAAATTCTGTTTAGCGGACCAGCCTTGTTGTGAACTTGCGTGCATTTCAGCTGCGAATTATGTGCCCTTTGTCAAGAGCACGCCGAGCTCAAAGCTAAAGGTTTTGATCCCTCCAAAGGTATATATGTGCAATTCTTCATTAATCAATATACCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

8.73

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 11 - 88 4.8e-18 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 218
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 2 cut(s) 13, 176
AluBI AGCT 4 cut(s) 214, 272, 309, 316
AluI AGCT 4 cut(s) 214, 272, 309, 316
Alw21I GWGCWC 2 cut(s) 302, 311
AlwI GGATC 1 cut(s) 322
AoxI GGCC 2 cut(s) 40, 109
ApeKI GCWGC 3 cut(s) 147, 214, 272
ApoI RAATTY 1 cut(s) 224
AseI ATTAAT 1 cut(s) 362
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 33, 40, 238
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 2 cut(s) 33, 238
BaeGI GKGCMC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 302, 311
BbvI GCAGC 3 cut(s) 134, 201, 259
BccI CCATC 1 cut(s) 163
BcgI CGANNNNNNTGC 4 cut(s) 129, 163, 265, 299
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 3 cut(s) 148, 215, 273
BlsI GCNGC 3 cut(s) 149, 216, 274
Bme18I GGWCC 2 cut(s) 33, 238
BmgT120I GGNCC 3 cut(s) 33, 40, 238
BmsI GCATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 134, 201, 259
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 42, 111
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 302, 311
BslI CCNNNNNNNGG 1 cut(s) 337
BsnI GGCC 2 cut(s) 42, 111
Bsp1286I GDGCHC 3 cut(s) 288, 302, 311
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 1 cut(s) 236
BspANI GGCC 2 cut(s) 42, 111
BspPI GGATC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 262, 302
BstDSI CCRYGG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 84, 306
BstNSI RCATGY 2 cut(s) 75, 87
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 134, 201, 259
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 42, 111
BtgI CCRYGG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 262, 302
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 33, 40, 238
CviAII CATG 4 cut(s) 72, 84, 96, 195
CviJI RGCY 8 cut(s) 42, 111, 187, 214, 244, 272, 309, 316
CviKI_1 RGCY 8 cut(s) 42, 111, 187, 214, 244, 272, 309, 316
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 309
EclXI CGGCCG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 33, 238
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 309
EcoRV GATATC 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 4 cut(s) 75, 87, 99, 198
FatI CATG 4 cut(s) 71, 83, 95, 194
Fnu4HI GCNGC 3 cut(s) 148, 215, 273
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 148, 215, 273
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 1 cut(s) 218
GluI GCNGC 3 cut(s) 148, 215, 273
HaeIII GGCC 2 cut(s) 42, 111
HhaI GCGC 1 cut(s) 219
Hin1II CATG 4 cut(s) 75, 87, 99, 198
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 98, 115
HpyCH4V TGCA 5 cut(s) 78, 119, 198, 264, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 306
Hsp92II CATG 4 cut(s) 75, 87, 99, 198
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 327
LpnPI CCDG 1 cut(s) 254
Lsp1109I GCAGC 3 cut(s) 134, 201, 259
LweI GCATC 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 1 cut(s) 348
MhlI GDGCHC 3 cut(s) 288, 302, 311
MluCI AATT 5 cut(s) 114, 123, 224, 277, 352
MnlI CCTC 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 200
MseI TTAA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 84, 306
NdeII GATC 1 cut(s) 327
NlaIII CATG 4 cut(s) 75, 87, 99, 198
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 100
NsbI TGCGCA 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 200
NspI RCATGY 2 cut(s) 75, 87
PciI ACATGT 1 cut(s) 71
PkrI GCNGC 3 cut(s) 149, 216, 274
PscI ACATGT 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 311
PspPI GGNCC 3 cut(s) 33, 40, 238
PvuII CAGCTG 1 cut(s) 272
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 3 cut(s) 148, 215, 273
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 3 cut(s) 33, 40, 238
SduI GDGCHC 3 cut(s) 288, 302, 311
SetI ASST 7 cut(s) 107, 216, 274, 311, 318, 324, 342
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 33, 238
Sse9I AATT 5 cut(s) 114, 123, 224, 277, 352
SsiI CCGC 1 cut(s) 236
SstI GAGCTC 1 cut(s) 311
TasI AATT 5 cut(s) 114, 123, 224, 277, 352
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 3 cut(s) 147, 214, 272
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 183, 348
TspGWI ACGGA 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 33, 238
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 1 cut(s) 224
XceI RCATGY 2 cut(s) 75, 87
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.