Prupe.1G042600_v2.0.a1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000960
Physical Location & Seq
Forward (+)
3057042 .. 3057694
653 bp
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UTR
Exon/CDS
Intron
Prupe.1G042600.1

Sequence Viewer

Length: 354 bp
ATGCTGCCAGCTACAGGAAATGGTAGCATGATGTGTCTCATGCAATTAAAGTGGACGACTTGTTGTGAGAGACTGGTTGCATATAACAATTTCAAGGAGGATAATTTGGTTGTACACTTGTACTCGTGCATTTATAGAAAGAAATTACGCCAAAACCAAAAGTTTTATTTGCCGAAGGAGCCCTGGTCGGATTGTTGTGTTCATTTCTGCTGCGAACGTTGTGCTCTCTGTCAAGAACATTCTCAGCTCCAATCTAGAGGCTTCGACCCTTCGAGAGCTTCTAATCTAGCACAATCATCAAGTTGGATCATTGGGCCACCAACTTCTGCTCCACAGGTATCCATGCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

118

Amino Acids

13.45

Weight (kDa)

8.73

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 217
AclWI GGATC 1 cut(s) 314
AfaI GTAC 2 cut(s) 114, 122
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 3 cut(s) 11, 247, 278
AluI AGCT 3 cut(s) 11, 247, 278
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 2 cut(s) 41, 64
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 4, 210
AspS9I GGNCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 184
BciVI GTATCC 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 41, 64
BfaI CTAG 2 cut(s) 255, 287
BfmI CTRYAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 2 cut(s) 5, 211
BlsI GCNGC 2 cut(s) 6, 212
Bme1390I CCNGG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 182
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 41, 64
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 183, 226
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 306
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 184
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 41, 64
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 197
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 2 cut(s) 113, 121
CspCI CAANNNNNGTGG 2 cut(s) 32, 67
CviAII CATG 3 cut(s) 28, 40, 343
CviJI RGCY 6 cut(s) 11, 181, 247, 261, 278, 316
CviKI_1 RGCY 6 cut(s) 11, 181, 247, 261, 278, 316
CviQI GTAC 2 cut(s) 113, 121
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 3 cut(s) 31, 43, 346
FaiI YATR 6 cut(s) 29, 41, 82, 84, 135, 344
FatI CATG 3 cut(s) 27, 39, 342
Fnu4HI GCNGC 2 cut(s) 5, 211
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 5, 211
FspBI CTAG 2 cut(s) 255, 287
GluI GCNGC 2 cut(s) 5, 211
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 3 cut(s) 31, 43, 346
Hpy166II GTNNAC 2 cut(s) 54, 115
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 233, 255, 273
Hpy8I GTNNAC 2 cut(s) 54, 115
HpyAV CCTTC 2 cut(s) 169, 279
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 43, 80, 129, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 3 cut(s) 31, 43, 346
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 3 cut(s) 178, 252, 334
LpnPI CCDG 5 cut(s) 21, 59, 169, 196, 320
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 2 cut(s) 255, 287
MaeII ACGT 1 cut(s) 217
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 183, 226
MluCI AATT 4 cut(s) 44, 88, 103, 143
MmeI TCCRAC 2 cut(s) 168, 284
MnlI CCTC 2 cut(s) 91, 251
MseI TTAA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 1 cut(s) 306
NlaIII CATG 3 cut(s) 31, 43, 346
NlaIV GGNNCC 1 cut(s) 180
PkrI GCNGC 2 cut(s) 6, 212
Psp1406I AACGTT 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 314
RsaI GTAC 2 cut(s) 114, 122
RsaNI GTAC 2 cut(s) 113, 121
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 5, 211
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 2 cut(s) 183, 226
SetI ASST 5 cut(s) 13, 220, 249, 280, 339
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 4 cut(s) 44, 88, 103, 143
SspMI CTAG 2 cut(s) 255, 287
StyD4I CCNGG 1 cut(s) 182
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 264, 272
TasI AATT 4 cut(s) 44, 88, 103, 143
TatI WGTACW 2 cut(s) 112, 120
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 2 cut(s) 4, 210
TspDTI ATGAA 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 254
XspI CTAG 2 cut(s) 255, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.