Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

3117052 .. 3118338

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G043500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACGTTGACTATGGTCATCGCCCTCAGCAGTGGTCACGTGGTCTTTGTAACTGTGGAGACGATATTTGTACATGTTGCATCTCATGGTTTCTCCCATGCATCACCTTTGGCCGAATCGCAGAAATCATCGACGAAGGACAAAATTCTTGCCTTTCCCATAGCATAGTGTACGGGTTCCTGTTGATGATTCGATGCCAATGGGTCTACTCATGCATGTATAGAGAGAAATTGCGCCAAAAATTTGGTCTGCCGGAGGAGCCTTGTGGTGATTGTTGTGTTCATTTCTTCTGTGAACCGTGTGCCCTCTGCCAAGAACATGCTGAGCTCAAATCTAGAGGCTTCGACCCCTCCAAAGGTTGGATTGGGGCACCAACTGCTGCTCCACAGGTGCCTTCTTCCATGATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

138

Amino Acids

15.51

Weight (kDa)

5.74

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	370, 391
AccB7I	CCANNNNNTGG	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	145, 242
AcvI	CACGTG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	73, 173
AfiI	CCNNNNNNNGG	2 cut(s)	356, 360
AflIII	ACRYGT	1 cut(s)	74
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	145, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	97, 281
BaeGI	GKGCMC	2 cut(s)	307, 373
BanI	GGYRCC	2 cut(s)	370, 391
BanII	GRGCYC	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	381
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	382
BmiI	GGNNCC	4 cut(s)	179, 261, 372, 393
BmsI	GCATC	3 cut(s)	90, 111, 185
BoxI	GACNNNNGTC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 360
BseLI	CCNNNNNNNGG	2 cut(s)	356, 360
BseMII	CTCAG	2 cut(s)	41, 315
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	2 cut(s)	307, 373
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	2 cut(s)	370, 391
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	356, 360
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	3 cut(s)	307, 330, 373
Bsp1407I	TGTACA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	405
Bsp1720I	GCTNAGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	40, 316
BspLI	GGNNCC	4 cut(s)	179, 261, 372, 393
BspT107I	GGYRCC	2 cut(s)	370, 391
BsrGI	TGTACA	1 cut(s)	71
BssMI	GATC	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	56, 300
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	27, 324
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 377
BstNSI	RCATGY	3 cut(s)	78, 220, 323
BstPAI	GACNNNNGTC	1 cut(s)	15
BstSLI	GKGCMC	2 cut(s)	307, 373
BstV1I	GCAGC	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	72, 172
CviAII	CATG	7 cut(s)	75, 87, 99, 213, 217, 320, 403
CviJI	RGCY	4 cut(s)	114, 262, 328, 342
CviKI_1	RGCY	4 cut(s)	114, 262, 328, 342
CviQI	GTAC	2 cut(s)	72, 172
DdeI	CTNAG	2 cut(s)	27, 324
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	328
Eco72I	CACGTG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	328
EcoT22I	ATGCAT	2 cut(s)	104, 218
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	7 cut(s)	78, 90, 102, 216, 220, 323, 406
FatI	CATG	7 cut(s)	74, 86, 98, 212, 216, 319, 402
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	7 cut(s)	78, 90, 102, 216, 220, 323, 406
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	117, 190
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	97, 281
Hpy166II	GTNNAC	4 cut(s)	10, 172, 208, 296
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	4 cut(s)	10, 172, 208, 296
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	131, 405
HpyCH4III	ACNGT	2 cut(s)	56, 300
HpyCH4IV	ACGT	2 cut(s)	6, 40
HpyCH4V	TGCA	3 cut(s)	81, 102, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 377
HpyF3I	CTNAG	2 cut(s)	27, 324
HpySE526I	ACGT	2 cut(s)	6, 40
Hsp92II	CATG	7 cut(s)	78, 90, 102, 216, 220, 323, 406
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	259, 388
LpnPI	CCDG	3 cut(s)	194, 267, 374
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	3 cut(s)	90, 111, 185
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	6, 40
MaeIII	GTNAC	2 cut(s)	36, 50
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	2 cut(s)	280, 390
MhlI	GDGCHC	3 cut(s)	307, 330, 373
MluCI	AATT	3 cut(s)	145, 230, 242
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	5 cut(s)	36, 250, 317, 332, 361
Mph1103I	ATGCAT	2 cut(s)	104, 218
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	259, 377
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	7 cut(s)	78, 90, 102, 216, 220, 323, 406
NlaIV	GGNNCC	4 cut(s)	179, 261, 372, 393
NmuCI	GTSAC	1 cut(s)	36
NsiI	ATGCAT	2 cut(s)	104, 218
NspI	RCATGY	3 cut(s)	78, 220, 323
PciI	ACATGT	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	117, 190
PflMI	CCANNNNNTGG	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	382
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	41
PscI	ACATGT	1 cut(s)	74
PshAI	GACNNNNGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	330
PspCI	CACGTG	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	179, 261, 372, 393
RsaI	GTAC	2 cut(s)	73, 173
RsaNI	GTAC	2 cut(s)	72, 172
SacI	GAGCTC	1 cut(s)	330
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	405
SduI	GDGCHC	3 cut(s)	307, 330, 373
SetI	ASST	6 cut(s)	9, 43, 110, 330, 361, 393
SfaNI	GCATC	3 cut(s)	90, 111, 185
Sse9I	AATT	3 cut(s)	145, 230, 242
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	56, 300
TaiI	ACGT	2 cut(s)	9, 43
TaqI	TCGA	3 cut(s)	132, 193, 345
TasI	AATT	3 cut(s)	145, 230, 242
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	117, 190
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	360
XapI	RAATTY	2 cut(s)	145, 242
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	3 cut(s)	78, 220, 323
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	2 cut(s)	104, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.