Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

17125208 .. 17127362

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGAGACCAAGAAGCAGAATACCAGGGTGATGTTCATGACCAACCTCAAATGGAGGCGGAGGAGGTGGAGTTACAAGATCAACAATTTGAGTATCAACAAGTGCCTGACACTGGCGACGGTGTTCCTCCATTGAACTATGATGACCAAAACCAACATGATCAATACCAACAACCACAGCCACAGCCACCCAATCAAAATGATTATGACCCCCAACCGCAACCACAACCACAAGTCGTCTTTCAGCAGACACAACAGCCATCTCAGCCTCAGCCAATGCAGTTCCCACCACTAGGTCCTCCACAACCAAACCCTTATCAGACTCAACCACAGCAATTCCCTCCTCAAAGCCCTCAGCAGTTTCCTCCTCAGAGGCCACAGCAGTTTCCTCCTCAAAGTCCACAACAATTTCCTCCTCAAAGTCCAATACAGTTTCCTCCTCAAAGGCCACAGCAGCTCCCTCCTCAAAACCCACAGCAGTTCCCTCCTCAGAGCCCACAGCAGTTTCCTCCTCAAAGTCCAAAGCAATTTCCTCCTCAAAGGCCACAGCAGTACCCACCACAAAGCCCGCAATTTCAAGCTCAACAACAACAACAGCAGCAGCAGCAGCAGGGCTATCAGCAGCCTCAAATGACCCCCCAGCCTGGGGCTGCTGCACAGTTCCCACCCCAGAATGTGCAATCCCATCCCAATCCCATGTATGGAAATGGGGCCAACCAGCCTGGGGCCTACCCACCACAAGCACCCCAACAATCTCCAGCAAAATTTCCTCCTGCAAGTCCAAGTACACCTCATCAGGTTCATTACCAGCAGCAGCAGCCGCTACCAGCACAAGCAGGGTACATTAATGTTAATGCAGGCAATACCAATGCCATGCCTGATAATAATTATGCTGCTCAAGGGGTTCCAGTGCAGCAGCCTCATTACCAGCCGGGACCTCTTAATCATATCAACCTGCAGAATGTTGGCACTGAGGGCTGGAGTTCTGAGTTATTTGATTGCATGGATGATCCAATGAATGCTCTCACAACGGCTTTCGTTCCATGCTTGACGTTCGGGCAGATAGCAGAGATTGTAGATAACGGCACTACCTCATGTGCCATCAGCGGATTGTTCTACGGGTTGATTGCAAGTTTCCTTGGGGTACCATTCATAATGTCATGCACTTATCGCACAAAGCTGCGGAGCATGTTTGGGCTGGTGGAGGCCCCTGCACCCGATTGGGTCACTCATTTGTTTTGTGAACCCTGTGCTCTCTGCCAAGAATATAGGGAACTTCAGATCAGAGGGATAGATCCTTCCATAGGTTGGATAGGAAATTTGCAACGGAATCCCAACTTGCAGCAGCAGCTGCGAGCTAACATGATGGCGCCTCCACCACCCCAATATATGAATCATAATTGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

470

Amino Acids

52.72

Weight (kDa)

4.51

Isoelectric Point (pI)

93.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	963
Acc65I	GGTACC	1 cut(s)	1144
AccB1I	GGYRCC	2 cut(s)	1144, 1369
AccB7I	CCANNNNNTGG	1 cut(s)	1308
AciI	CCGC	6 cut(s)	59, 218, 569, 821, 1107, 1183
AclWI	GGATC	2 cut(s)	1004, 1289
AcsI	RAATTY	2 cut(s)	764, 1318
AcuI	CTGAAG	1 cut(s)	1262
AcyI	GRCGYC	1 cut(s)	1370
AfaI	GTAC	4 cut(s)	554, 787, 842, 1146
AfiI	CCNNNNNNNGG	9 cut(s)	113, 293, 644, 645, 646, 701, 724, 1304, 1308
AgsI	TTSAA	2 cut(s)	136, 578
AjnI	CCWGG	3 cut(s)	24, 643, 721
AluBI	AGCT	5 cut(s)	457, 581, 1180, 1351, 1358
AluI	AGCT	5 cut(s)	457, 581, 1180, 1351, 1358
Alw21I	GWGCWC	1 cut(s)	1255
AlwI	GGATC	2 cut(s)	1004, 1289
AlwNI	CAGNNNCTG	1 cut(s)	1351
AoxI	GGCC	6 cut(s)	374, 446, 542, 711, 726, 1206
ApoI	RAATTY	2 cut(s)	764, 1318
AseI	ATTAAT	1 cut(s)	846
Asp718I	GGTACC	1 cut(s)	1144
AspLEI	GCGC	1 cut(s)	1372
AspS9I	GGNCC	5 cut(s)	296, 711, 726, 935, 1207
AsuC2I	CCSGG	1 cut(s)	933
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	296, 935
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
BanI	GGYRCC	2 cut(s)	1144, 1369
BanII	GRGCYC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	1255
BbvCI	CCTCAGC	2 cut(s)	270, 354
BccI	CCATC	4 cut(s)	268, 693, 1109, 1360
BceAI	ACGGC	2 cut(s)	1047, 1099
BciT130I	CCWGG	3 cut(s)	26, 645, 723
BclI	TGATCA	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	933
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	956
BfoI	RGCGCY	1 cut(s)	1373
BfuAI	ACCTGC	1 cut(s)	963
Bme1390I	CCNGG	4 cut(s)	26, 645, 723, 933
Bme18I	GGWCC	2 cut(s)	296, 935
BmgT120I	GGNCC	5 cut(s)	296, 711, 726, 935, 1207
BmiI	GGNNCC	7 cut(s)	712, 727, 906, 936, 1146, 1209, 1371
BmrFI	CCNGG	4 cut(s)	26, 645, 723, 933
BpmI	CTGGAG	2 cut(s)	741, 1000
Bpu10I	CCTNAGC	2 cut(s)	270, 354
BpuEI	CTTGAG	1 cut(s)	882
BpuMI	CCSGG	1 cut(s)	933
BsaHI	GRCGYC	1 cut(s)	1370
BsaJI	CCNNGG	4 cut(s)	25, 644, 722, 1138
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 441, 471
Bsc4I	CCNNNNNNNGG	9 cut(s)	113, 293, 644, 645, 646, 701, 724, 1304, 1308
Bse1I	ACTGG	2 cut(s)	118, 908
BseBI	CCWGG	3 cut(s)	26, 645, 723
BseDI	CCNNGG	4 cut(s)	25, 644, 722, 1138
BseGI	GGATG	2 cut(s)	685, 1012
BseLI	CCNNNNNNNGG	9 cut(s)	113, 293, 644, 645, 646, 701, 724, 1304, 1308
BseMII	CTCAG	7 cut(s)	278, 284, 368, 383, 503, 963, 978
BseNI	ACTGG	2 cut(s)	118, 908
BseYI	CCCAGC	1 cut(s)	639
BsgI	GTGCAG	3 cut(s)	639, 932, 1197
BshFI	GGCC	6 cut(s)	376, 448, 544, 713, 728, 1208
BshNI	GGYRCC	2 cut(s)	1144, 1369
BsiHKAI	GWGCWC	1 cut(s)	1255
BsiSI	CCGG	1 cut(s)	932
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	9 cut(s)	113, 293, 644, 645, 646, 701, 724, 1304, 1308
BsmFI	GGGAC	1 cut(s)	948
BsmI	GAATGC	1 cut(s)	1024
BsnI	GGCC	6 cut(s)	376, 448, 544, 713, 728, 1208
Bsp1286I	GDGCHC	2 cut(s)	497, 1255
Bsp143I	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
BspACI	CCGC	6 cut(s)	59, 218, 569, 821, 1107, 1183
BspANI	GGCC	6 cut(s)	376, 448, 544, 713, 728, 1208
BspCNI	CTCAG	7 cut(s)	277, 283, 367, 382, 502, 964, 979
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	7 cut(s)	712, 727, 906, 936, 1146, 1209, 1371
BspMAI	CTGCAG	1 cut(s)	960
BspMI	ACCTGC	1 cut(s)	963
BspPI	GGATC	2 cut(s)	1004, 1289
BspT107I	GGYRCC	2 cut(s)	1144, 1369
BsrI	ACTGG	2 cut(s)	118, 908
BssECI	CCNNGG	4 cut(s)	25, 644, 722, 1138
BssMI	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
BssNI	GRCGYC	1 cut(s)	1370
BssT1I	CCWWGG	1 cut(s)	1138
Bst2UI	CCWGG	3 cut(s)	26, 645, 723
Bst4CI	ACNGT	3 cut(s)	122, 432, 660
BstACI	GRCGYC	1 cut(s)	1370
BstAPI	GCANNNNNTGC	1 cut(s)	1351
BstC8I	GCNNGC	3 cut(s)	569, 859, 1356
BstDEI	CTNAG	7 cut(s)	264, 270, 354, 369, 489, 972, 987
BstENI	CCTNNNNNAGG	1 cut(s)	1302
BstF5I	GGATG	2 cut(s)	685, 1012
BstH2I	RGCGCY	1 cut(s)	1373
BstHHI	GCGC	1 cut(s)	1372
BstKTI	GATC	5 cut(s)	82, 163, 1012, 1284, 1297
BstMBI	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
BstNI	CCWGG	3 cut(s)	26, 645, 723
BstNSI	RCATGY	1 cut(s)	1192
BstSCI	CCNGG	4 cut(s)	24, 643, 721, 931
BstSFI	CTRYAG	1 cut(s)	956
BstX2I	RGATCY	1 cut(s)	1294
BstYI	RGATCY	1 cut(s)	1294
BsuRI	GGCC	6 cut(s)	376, 448, 544, 713, 728, 1208
BtsCI	GGATG	2 cut(s)	685, 1012
BtsIMutI	CAGTG	3 cut(s)	111, 915, 969
BveI	ACCTGC	1 cut(s)	963
Cac8I	GCNNGC	3 cut(s)	569, 859, 1356
CaiI	CAGNNNCTG	1 cut(s)	1351
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	1372
Cfr13I	GGNCC	5 cut(s)	296, 711, 726, 935, 1207
Csp6I	GTAC	4 cut(s)	553, 786, 841, 1145
CviQI	GTAC	4 cut(s)	553, 786, 841, 1145
DdeI	CTNAG	7 cut(s)	264, 270, 354, 369, 489, 972, 987
DinI	GGCGCC	1 cut(s)	1371
DpnI	GATC	5 cut(s)	81, 162, 1011, 1283, 1296
DpnII	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	1138
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	296, 935
Eco57I	CTGAAG	1 cut(s)	1262
EcoNI	CCTNNNNNAGG	1 cut(s)	1302
EcoO109I	RGGNCCY	4 cut(s)	296, 726, 935, 1207
EcoRII	CCWGG	3 cut(s)	24, 643, 721
EcoT14I	CCWWGG	1 cut(s)	1138
EcoT38I	GRGCYC	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	1371
EheI	GGCGCC	1 cut(s)	1371
ErhI	CCWWGG	1 cut(s)	1138
FaqI	GGGAC	1 cut(s)	948
FauI	CCCGC	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	2 cut(s)	672, 1019
FriOI	GRGCYC	1 cut(s)	497
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	1371
GsaI	CCCAGC	1 cut(s)	643
GsuI	CTGGAG	2 cut(s)	741, 1000
HaeII	RGCGCY	1 cut(s)	1373
HaeIII	GGCC	6 cut(s)	376, 448, 544, 713, 728, 1208
HapII	CCGG	1 cut(s)	932
HhaI	GCGC	1 cut(s)	1372
Hin1I	GRCGYC	1 cut(s)	1370
Hin6I	GCGC	1 cut(s)	1370
HinP1I	GCGC	1 cut(s)	1370
HinfI	GANTC	3 cut(s)	322, 1330, 1393
HpaII	CCGG	1 cut(s)	932
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	401, 788, 1244
Hpy188I	TCNGA	6 cut(s)	321, 372, 492, 988, 1281, 1286
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	3 cut(s)	401, 788, 1244
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	1308
HpyCH4III	ACNGT	3 cut(s)	122, 432, 660
HpyCH4IV	ACGT	1 cut(s)	1052
HpyF3I	CTNAG	7 cut(s)	264, 270, 354, 369, 489, 972, 987
HpySE526I	ACGT	1 cut(s)	1052
Hsp92I	GRCGYC	1 cut(s)	1370
HspAI	GCGC	1 cut(s)	1370
KasI	GGCGCC	1 cut(s)	1369
KpnI	GGTACC	1 cut(s)	1148
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
LmnI	GCTCC	2 cut(s)	462, 1185
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	1052
MaeIII	GTNAC	2 cut(s)	72, 1225
MalI	GATC	5 cut(s)	81, 162, 1011, 1283, 1296
MboI	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
MflI	RGATCY	1 cut(s)	1294
MhlI	GDGCHC	2 cut(s)	497, 1255
MluCI	AATT	9 cut(s)	86, 335, 407, 527, 572, 764, 886, 1318, 1399
Mly113I	GGCGCC	1 cut(s)	1370
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	1289
MseI	TTAA	3 cut(s)	846, 852, 942
MspA1I	CMGCKG	2 cut(s)	1107, 1351
MspI	CCGG	1 cut(s)	932
MspR9I	CCNGG	4 cut(s)	26, 645, 723, 933
Mva1269I	GAATGC	1 cut(s)	1024
MvaI	CCWGG	3 cut(s)	26, 645, 723
NarI	GGCGCC	1 cut(s)	1370
NciI	CCSGG	1 cut(s)	933
NdeII	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
NlaIV	GGNNCC	7 cut(s)	712, 727, 906, 936, 1146, 1209, 1371
NmuCI	GTSAC	1 cut(s)	1225
NspI	RCATGY	1 cut(s)	1192
PagI	TCATGA	1 cut(s)	37
PctI	GAATGC	1 cut(s)	1024
PfeI	GAWTC	2 cut(s)	1330, 1393
PflMI	CCANNNNNTGG	1 cut(s)	1308
PleI	GAGTC	1 cut(s)	316
PluTI	GGCGCC	1 cut(s)	1373
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	2 cut(s)	296, 935
PshBI	ATTAAT	1 cut(s)	846
Psp5II	RGGWCCY	2 cut(s)	296, 935
Psp6I	CCWGG	3 cut(s)	24, 643, 721
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	3 cut(s)	24, 643, 721
PspN4I	GGNNCC	7 cut(s)	712, 727, 906, 936, 1146, 1209, 1371
PspPI	GGNCC	5 cut(s)	296, 711, 726, 935, 1207
PspPPI	RGGWCCY	2 cut(s)	296, 935
PstI	CTGCAG	1 cut(s)	960
PstNI	CAGNNNCTG	1 cut(s)	1351
PsuI	RGATCY	1 cut(s)	1294
PvuII	CAGCTG	1 cut(s)	1351
RsaI	GTAC	4 cut(s)	554, 787, 842, 1146
RsaNI	GTAC	4 cut(s)	553, 786, 841, 1145
SaqAI	TTAA	3 cut(s)	846, 852, 942
Sau3AI	GATC	5 cut(s)	79, 160, 1009, 1281, 1294
Sau96I	GGNCC	5 cut(s)	296, 711, 726, 935, 1207
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	4 cut(s)	26, 645, 723, 933
SduI	GDGCHC	2 cut(s)	497, 1255
SfcI	CTRYAG	1 cut(s)	956
SfoI	GGCGCC	1 cut(s)	1371
SinI	GGWCC	2 cut(s)	296, 935
SmlI	CTYRAG	1 cut(s)	897
SmoI	CTYRAG	1 cut(s)	897
Sse9I	AATT	9 cut(s)	86, 335, 407, 527, 572, 764, 886, 1318, 1399
SsiI	CCGC	6 cut(s)	59, 218, 569, 821, 1107, 1183
SspDI	GGCGCC	1 cut(s)	1369
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	4 cut(s)	24, 643, 721, 931
StyI	CCWWGG	1 cut(s)	1138
TaaI	ACNGT	3 cut(s)	122, 432, 660
TaiI	ACGT	1 cut(s)	1055
TasI	AATT	9 cut(s)	86, 335, 407, 527, 572, 764, 886, 1318, 1399
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	2 cut(s)	1330, 1393
Tru1I	TTAA	3 cut(s)	846, 852, 942
Tru9I	TTAA	3 cut(s)	846, 852, 942
TscAI	CASTG	3 cut(s)	118, 915, 976
TseFI	GTSAC	1 cut(s)	1225
Tsp45I	GTSAC	1 cut(s)	1225
TspDTI	ATGAA	5 cut(s)	26, 791, 1031, 1141, 1406
TspGWI	ACGGA	1 cut(s)	1342
TspRI	CASTG	3 cut(s)	118, 915, 976
Van91I	CCANNNNNTGG	1 cut(s)	1308
VpaK11BI	GGWCC	2 cut(s)	296, 935
VspI	ATTAAT	1 cut(s)	846
XagI	CCTNNNNNAGG	1 cut(s)	1302
XapI	RAATTY	2 cut(s)	764, 1318
XceI	RCATGY	1 cut(s)	1192
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.