Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

30509176 .. 30510364

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1224000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTATGCAAATGTACCTAACCAACCCGGGGCGGTCTACCCGCCACAAGGACCACAACCAATGGGCATGGGGAACCAACAACCTCCAGCTCAGTTTCCTCCCCAATTTCCAGCGAATTATAATCAGCAATATCAGAAGCCGGCAGTGCAATTTTCCACACAGAATCAACAATACCAACAACAGCAGCCTAATAATGGTTATGCTGCTCAAGGGGTTCCAATGCAGCAGAGTCCTTACCAGCAGGGACCTCTTAATCACGTCAACCTGCAGAATGCTGGAACTGAGCAATGGAGTTCTGAGTTATTTGATTGCATGGATGATCCAATGAATGCTCTCACAACGGCTTTCGTTCCATGCTTGACGTTTGGCCAGATAGCAGAGGTTGTAGATAACGGCAGATCCTCATGTGCGACCAGCGGATTGTTCTACGGATTGATTGCAGCGTTCATTGGGATACCATTCATAATGTCATGCACGTATCGCACAAAGCTGCGCAGCAAATACAACCTAATCGAGTCCCCCGCACCCGATTGGGTCATCCATTTATTATGCGAACCCTGCGCTCTTTGCCAAGAGTACCGGGAACTTCAAGTCAGAGGGATTGACCCTTCAATCGGATGGATAGGAAATGTGCAAAGGAATCCCAGCTTGCAGCAGCCGAATGTTAATATGATGATGCCTCCAATGAACCAAAATATGAATCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

237

Amino Acids

26.4

Weight (kDa)

5.0

Isoelectric Point (pI)

62.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	97 - 195	5.4e-30	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	4 cut(s)	32, 41, 417, 522
AclWI	GGATC	2 cut(s)	314, 393
AcoI	YGGCCR	1 cut(s)	367
AfaI	GTAC	2 cut(s)	15, 578
AfiI	CCNNNNNNNGG	4 cut(s)	28, 47, 194, 614
AgsI	TTSAA	2 cut(s)	590, 612
AjiI	CACGTC	1 cut(s)	259
AluBI	AGCT	3 cut(s)	89, 490, 648
AluI	AGCT	3 cut(s)	89, 490, 648
AlwI	GGATC	2 cut(s)	314, 393
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	8 cut(s)	184, 203, 223, 440, 490, 495, 652, 655
AspLEI	GCGC	2 cut(s)	495, 563
AspS9I	GGNCC	2 cut(s)	50, 245
AsuC2I	CCSGG	3 cut(s)	27, 28, 581
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	50, 245
BalI	TGGCCA	1 cut(s)	369
BbvI	GCAGC	8 cut(s)	190, 196, 235, 452, 477, 507, 664, 667
BccI	CCATC	1 cut(s)	612
BceAI	ACGGC	2 cut(s)	357, 409
BciVI	GTATCC	1 cut(s)	447
BcnI	CCSGG	3 cut(s)	27, 28, 581
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	8 cut(s)	185, 204, 224, 441, 491, 496, 653, 656
BlsI	GCNGC	8 cut(s)	186, 205, 225, 442, 492, 497, 654, 657
Bme1390I	CCNGG	3 cut(s)	27, 28, 581
Bme18I	GGWCC	2 cut(s)	50, 245
BmeT110I	CYCGRG	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	50, 245
BmiI	GGNNCC	3 cut(s)	74, 216, 246
BmrFI	CCNGG	3 cut(s)	27, 28, 581
BmsI	GCATC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	192
BpuMI	CCSGG	3 cut(s)	27, 28, 581
BsaAI	YACGTR	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	26, 27
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 47, 194, 614
Bse118I	RCCGGY	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	26, 27
BseGI	GGATG	3 cut(s)	322, 537, 623
BseLI	CCNNNNNNNGG	4 cut(s)	28, 47, 194, 614
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	3 cut(s)	104, 273, 288
BseXI	GCAGC	8 cut(s)	190, 196, 235, 452, 477, 507, 664, 667
BseYI	CCCAGC	1 cut(s)	644
BshFI	GGCC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	27, 140, 580
BslFI	GGGAC	2 cut(s)	258, 502
BslI	CCNNNNNNNGG	4 cut(s)	28, 47, 194, 614
BsmFI	GGGAC	2 cut(s)	258, 502
BsmI	GAATGC	2 cut(s)	277, 334
BsnI	GGCC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	319, 398
BspACI	CCGC	4 cut(s)	32, 41, 417, 522
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	103, 274, 289
BspLI	GGNNCC	3 cut(s)	74, 216, 246
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	314, 393
BsrDI	GCAATG	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	26, 27
BssMI	GATC	2 cut(s)	319, 398
BstBAI	YACGTR	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	141, 650
BstDEI	CTNAG	3 cut(s)	90, 282, 297
BstF5I	GGATG	3 cut(s)	322, 537, 623
BstHHI	GCGC	2 cut(s)	495, 563
BstKTI	GATC	2 cut(s)	322, 401
BstMBI	GATC	2 cut(s)	319, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 480, 558, 567
BstSCI	CCNGG	3 cut(s)	25, 26, 579
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	8 cut(s)	190, 196, 235, 452, 477, 507, 664, 667
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	322, 537, 623
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	141, 650
CfoI	GCGC	2 cut(s)	495, 563
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	50, 245
Cfr9I	CCCGGG	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	14, 577
CviAII	CATG	5 cut(s)	67, 313, 354, 405, 471
CviJI	RGCY	8 cut(s)	89, 139, 187, 344, 369, 490, 648, 658
CviKI_1	RGCY	8 cut(s)	89, 139, 187, 344, 369, 490, 648, 658
CviQI	GTAC	2 cut(s)	14, 577
DdeI	CTNAG	3 cut(s)	90, 282, 297
DpnI	GATC	2 cut(s)	321, 400
DpnII	GATC	2 cut(s)	319, 398
EaeI	YGGCCR	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	50, 245
Eco88I	CYCGRG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	245
FaeI	CATG	5 cut(s)	70, 316, 357, 408, 474
FaqI	GGGAC	2 cut(s)	258, 502
FatI	CATG	5 cut(s)	66, 312, 353, 404, 470
FauI	CCCGC	2 cut(s)	48, 529
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	8 cut(s)	185, 204, 224, 441, 491, 496, 653, 656
FokI	GGATG	3 cut(s)	329, 524, 630
Fsp4HI	GCNGC	8 cut(s)	185, 204, 224, 441, 491, 496, 653, 656
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	2 cut(s)	494, 562
GluI	GCNGC	8 cut(s)	185, 204, 224, 441, 491, 496, 653, 656
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	3 cut(s)	27, 140, 580
HhaI	GCGC	2 cut(s)	495, 563
Hin1II	CATG	5 cut(s)	70, 316, 357, 408, 474
Hin6I	GCGC	2 cut(s)	493, 561
HinP1I	GCGC	2 cut(s)	493, 561
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	5 cut(s)	163, 229, 515, 640, 700
HpaII	CCGG	3 cut(s)	27, 140, 580
Hpy166II	GTNNAC	2 cut(s)	37, 262
Hpy188I	TCNGA	4 cut(s)	135, 298, 596, 617
Hpy8I	GTNNAC	2 cut(s)	37, 262
HpyAV	CCTTC	1 cut(s)	618
HpyCH4IV	ACGT	3 cut(s)	258, 362, 476
HpyCH4V	TGCA	9 cut(s)	8, 148, 223, 268, 312, 440, 474, 634, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 480, 558, 567
HpyF3I	CTNAG	3 cut(s)	90, 282, 297
HpySE526I	ACGT	3 cut(s)	258, 362, 476
Hsp92II	CATG	5 cut(s)	70, 316, 357, 408, 474
HspAI	GCGC	2 cut(s)	493, 561
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	319, 398
Lsp1109I	GCAGC	8 cut(s)	190, 196, 235, 452, 477, 507, 664, 667
LweI	GCATC	1 cut(s)	666
MaeII	ACGT	3 cut(s)	258, 362, 476
MalI	GATC	2 cut(s)	321, 400
MboI	GATC	2 cut(s)	319, 398
MflI	RGATCY	1 cut(s)	398
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	3 cut(s)	104, 115, 149
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	238, 524
MnlI	CCTC	7 cut(s)	93, 108, 258, 373, 412, 590, 690
Mox20I	TGGCCA	1 cut(s)	369
MroNI	GCCGGC	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	2 cut(s)	252, 666
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	3 cut(s)	27, 140, 580
MspR9I	CCNGG	3 cut(s)	27, 28, 581
Mva1269I	GAATGC	2 cut(s)	277, 334
MwoI	GCNNNNNNNGC	4 cut(s)	145, 480, 558, 567
NaeI	GCCGGC	1 cut(s)	141
NciI	CCSGG	3 cut(s)	27, 28, 581
NdeII	GATC	2 cut(s)	319, 398
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	5 cut(s)	70, 316, 357, 408, 474
NlaIV	GGNNCC	3 cut(s)	74, 216, 246
NsbI	TGCGCA	1 cut(s)	494
PctI	GAATGC	2 cut(s)	277, 334
PdiI	GCCGGC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	163, 640, 700
PkrI	GCNGC	8 cut(s)	186, 205, 225, 442, 492, 497, 654, 657
PleI	GAGTC	2 cut(s)	237, 523
PpsI	GAGTC	2 cut(s)	237, 523
Ppu21I	YACGTR	1 cut(s)	477
PpuMI	RGGWCCY	1 cut(s)	245
PsiI	TTATAA	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	644
PspN4I	GGNNCC	3 cut(s)	74, 216, 246
PspPI	GGNCC	2 cut(s)	50, 245
PspPPI	RGGWCCY	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	15, 578
RsaNI	GTAC	2 cut(s)	14, 577
SaqAI	TTAA	2 cut(s)	252, 666
SatI	GCNGC	8 cut(s)	185, 204, 224, 441, 491, 496, 653, 656
Sau3AI	GATC	2 cut(s)	319, 398
Sau96I	GGNCC	2 cut(s)	50, 245
SchI	GAGTC	2 cut(s)	238, 524
ScrFI	CCNGG	3 cut(s)	27, 28, 581
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	50, 245
SmaI	CCCGGG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	104, 115, 149
SsiI	CCGC	4 cut(s)	32, 41, 417, 522
StyD4I	CCNGG	3 cut(s)	25, 26, 579
TaiI	ACGT	3 cut(s)	261, 365, 479
TaqI	TCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	104, 115, 149
TfiI	GAWTC	3 cut(s)	163, 640, 700
Tru1I	TTAA	2 cut(s)	252, 666
Tru9I	TTAA	2 cut(s)	252, 666
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	8 cut(s)	184, 203, 223, 440, 490, 495, 652, 655
TspDTI	ATGAA	4 cut(s)	341, 436, 451, 701
TspGWI	ACGGA	1 cut(s)	444
TspMI	CCCGGG	1 cut(s)	26
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	50, 245
XmaI	CCCGGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.