Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

12129525 .. 12130645

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAACTTCAGAGTTGGAAGACCCCTCCTCAATATACCACGAGGATGTTCAGCCTGAATGTCATCAAGATGAGGTAGAAGTTCATCATGAGGTTGAGTATGGAGTCGTTTTGGAAGCCACGTTTGCCGCTGCCAGGACAACCACAACCATCACCACCTTACCTGCAGCCTCTACAATACCCACCACAACCAACACCAATGCAGTATCCGCCTCCACGGCCGCCTCGACCTGTGCCTCCAAGCCACATCACCAAGTCTATACTCCTCCACATGTTTATAAACCACCTCAACCACCCCCGATTGGCAGCGAGCCTTGGAGAACTGGGCTATTTGATTGCCTGGAGGATCCTAATATTGCTGTAACGACGGCTCTTGTCCCATGCCTGACGTTCGGCCAGATAGCAGAGGTTGTGGACGACGGCAATACCACATGCGCAACAAGCGGATTGCTATACGGGCTGGTCGCAGCGTTCAGTGGCATGCCATGCATTGTGTCATGCGCGTATCGTACAAAGATTAGGAACATGTATGGGCTAGTTGAGGCACCTGCGTCCGACTGGCTCACCCATTTGTTTTGTGAGCCGTGTGCTCTTTGCCAAGAATACAAAGAGCTTCAAAGGAGAGGGCTAGACCCTTCAAGAGGATGGCAAGGAAATGCGGCAGCCAGCGGCATGAATGTGCGATCGCATATGACGCCTCCGGTGATCAACCACAGAATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

242

Amino Acids

26.13

Weight (kDa)

5.07

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	106 - 204	1.5e-29	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AarI	CACCTGC	1 cut(s)	556
Acc16I	TGCGCA	1 cut(s)	436
Acc36I	ACCTGC	2 cut(s)	172, 556
AccB1I	GGYRCC	1 cut(s)	544
AccII	CGCG	1 cut(s)	503
AciI	CCGC	6 cut(s)	129, 210, 222, 444, 659, 669
AclWI	GGATC	2 cut(s)	341, 354
AcoI	YGGCCR	2 cut(s)	219, 394
AcyI	GRCGYC	1 cut(s)	695
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	3 cut(s)	135, 302, 641
AflIII	ACRYGT	2 cut(s)	271, 525
AgsI	TTSAA	2 cut(s)	617, 639
AjnI	CCWGG	2 cut(s)	134, 339
AluBI	AGCT	1 cut(s)	613
AluI	AGCT	1 cut(s)	613
Alw21I	GWGCWC	1 cut(s)	592
AlwI	GGATC	2 cut(s)	341, 354
AoxI	GGCC	2 cut(s)	219, 394
ApeKI	GCWGC	5 cut(s)	131, 167, 306, 467, 662
AsiSI	GCGATCGC	1 cut(s)	686
AspLEI	GCGC	2 cut(s)	437, 503
AsuHPI	GGTGA	4 cut(s)	145, 242, 556, 715
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	544
BauI	CACGAG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	5 cut(s)	118, 179, 318, 479, 674
BccI	CCATC	2 cut(s)	158, 639
BceAI	ACGGC	4 cut(s)	234, 384, 436, 568
BciT130I	CCWGG	2 cut(s)	136, 341
BciVI	GTATCC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	705
BfaI	CTAG	2 cut(s)	536, 629
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	2 cut(s)	172, 556
BfuI	GTATCC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	9 cut(s)	129, 132, 168, 222, 307, 468, 660, 663, 670
BlsI	GCNGC	9 cut(s)	130, 133, 169, 223, 308, 469, 661, 664, 671
Bme1390I	CCNGG	2 cut(s)	136, 341
BmiI	GGNNCC	2 cut(s)	348, 546
BmrFI	CCNGG	2 cut(s)	136, 341
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	216, 314
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 302, 641
Bse1I	ACTGG	2 cut(s)	328, 563
BseBI	CCWGG	2 cut(s)	136, 341
BseDI	CCNNGG	2 cut(s)	216, 314
BseGI	GGATG	2 cut(s)	52, 650
BseLI	CCNNNNNNNGG	3 cut(s)	135, 302, 641
BseNI	ACTGG	2 cut(s)	328, 563
BseRI	GAGGAG	2 cut(s)	19, 255
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	5 cut(s)	118, 179, 318, 479, 674
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	2 cut(s)	222, 686
BshFI	GGCC	2 cut(s)	221, 396
BshNI	GGYRCC	1 cut(s)	544
BsiEI	CGRYCG	2 cut(s)	222, 686
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	135, 302, 641
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	221, 396
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	346, 683, 705
BspACI	CCGC	6 cut(s)	129, 210, 222, 444, 659, 669
BspANI	GGCC	2 cut(s)	221, 396
BspFNI	CGCG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	348, 546
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	2 cut(s)	172, 556
BspPI	GGATC	2 cut(s)	341, 354
BspT107I	GGYRCC	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	328, 563
BssECI	CCNNGG	2 cut(s)	216, 314
BssMI	GATC	3 cut(s)	346, 683, 705
BssNI	GRCGYC	1 cut(s)	695
BssSI	CACGAG	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	136, 341
BstACI	GRCGYC	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	486
BstC8I	GCNNGC	3 cut(s)	311, 482, 667
BstDSI	CCRYGG	1 cut(s)	216
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	52, 650
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	2 cut(s)	437, 503
BstKTI	GATC	3 cut(s)	349, 686, 708
BstMBI	GATC	3 cut(s)	346, 683, 705
BstMCI	CGRYCG	2 cut(s)	222, 686
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 209, 218, 441, 457, 486, 694
BstNI	CCWGG	2 cut(s)	136, 341
BstNSI	RCATGY	4 cut(s)	275, 435, 484, 529
BstSCI	CCNGG	2 cut(s)	134, 339
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	5 cut(s)	118, 179, 318, 479, 674
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BstZI	CGGCCG	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	221, 396
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	52, 650
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	2 cut(s)	172, 556
Cac8I	GCNNGC	3 cut(s)	311, 482, 667
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	2 cut(s)	437, 503
CseI	GACGC	2 cut(s)	540, 703
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	9 cut(s)	89, 272, 381, 432, 481, 486, 498, 526, 673
CviQI	GTAC	1 cut(s)	510
DpnI	GATC	3 cut(s)	348, 685, 707
DpnII	GATC	3 cut(s)	346, 683, 705
EaeI	YGGCCR	2 cut(s)	219, 394
EagI	CGGCCG	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	314
Eco52I	CGGCCG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	134, 339
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	9 cut(s)	92, 275, 384, 435, 484, 489, 501, 529, 676
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	9 cut(s)	88, 271, 380, 431, 480, 485, 497, 525, 672
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	9 cut(s)	129, 132, 168, 222, 307, 468, 660, 663, 670
FokI	GGATG	2 cut(s)	59, 657
Fsp4HI	GCNGC	9 cut(s)	129, 132, 168, 222, 307, 468, 660, 663, 670
FspBI	CTAG	2 cut(s)	536, 629
FspI	TGCGCA	1 cut(s)	436
GlaI	GCGC	2 cut(s)	436, 502
GluI	GCNGC	9 cut(s)	129, 132, 168, 222, 307, 468, 660, 663, 670
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	221, 396
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	2 cut(s)	540, 703
HhaI	GCGC	2 cut(s)	437, 503
Hin1I	GRCGYC	1 cut(s)	695
Hin1II	CATG	9 cut(s)	92, 275, 384, 435, 484, 489, 501, 529, 676
Hin6I	GCGC	2 cut(s)	435, 501
HinP1I	GCGC	2 cut(s)	435, 501
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	4 cut(s)	145, 242, 556, 715
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	13, 556
Hpy188III	TCNNGA	3 cut(s)	68, 89, 639
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	370, 422
HpyAV	CCTTC	1 cut(s)	645
HpyCH4IV	ACGT	2 cut(s)	122, 389
HpyCH4V	TGCA	3 cut(s)	167, 203, 489
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 209, 218, 441, 457, 486, 694
HpySE526I	ACGT	2 cut(s)	122, 389
Hsp92I	GRCGYC	1 cut(s)	695
Hsp92II	CATG	9 cut(s)	92, 275, 384, 435, 484, 489, 501, 529, 676
HspAI	GCGC	2 cut(s)	435, 501
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	346, 683, 705
Lsp1109I	GCAGC	5 cut(s)	118, 179, 318, 479, 674
MaeI	CTAG	2 cut(s)	536, 629
MaeII	ACGT	2 cut(s)	122, 389
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	348, 685, 707
MboI	GATC	3 cut(s)	346, 683, 705
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	592
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	579
Mph1103I	ATGCAT	1 cut(s)	491
MslI	CAYNNNNRTG	3 cut(s)	45, 69, 677
MspA1I	CMGCKG	2 cut(s)	131, 669
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	2 cut(s)	136, 341
MvaI	CCWGG	2 cut(s)	136, 341
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	7 cut(s)	125, 209, 218, 441, 457, 486, 694
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	3 cut(s)	346, 683, 705
NlaIII	CATG	9 cut(s)	92, 275, 384, 435, 484, 489, 501, 529, 676
NlaIV	GGNNCC	2 cut(s)	348, 546
NsbI	TGCGCA	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	4 cut(s)	275, 435, 484, 529
PaeI	GCATGC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	556
PciI	ACATGT	2 cut(s)	271, 525
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PkrI	GCNGC	9 cut(s)	130, 133, 169, 223, 308, 469, 661, 664, 671
Ple19I	CGATCG	1 cut(s)	686
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PscI	ACATGT	2 cut(s)	271, 525
PsiI	TTATAA	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	134, 339
PspGI	CCWGG	2 cut(s)	134, 339
PspN4I	GGNNCC	2 cut(s)	348, 546
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	346
PvuI	CGATCG	1 cut(s)	686
RgaI	GCGATCGC	1 cut(s)	686
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	3 cut(s)	45, 69, 677
SatI	GCNGC	9 cut(s)	129, 132, 168, 222, 307, 468, 660, 663, 670
Sau3AI	GATC	3 cut(s)	346, 683, 705
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	136, 341
SduI	GDGCHC	1 cut(s)	592
SfaAI	GCGATCGC	1 cut(s)	686
SfcI	CTRYAG	1 cut(s)	165
SgfI	GCGATCGC	1 cut(s)	686
SmiMI	CAYNNNNRTG	3 cut(s)	45, 69, 677
SphI	GCATGC	1 cut(s)	484
SsiI	CCGC	6 cut(s)	129, 210, 222, 444, 659, 669
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	536, 629
StyD4I	CCNGG	2 cut(s)	134, 339
StyI	CCWWGG	1 cut(s)	314
TaiI	ACGT	2 cut(s)	125, 392
TaqI	TCGA	1 cut(s)	227
TauI	GCSGC	4 cut(s)	131, 224, 662, 672
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	5 cut(s)	131, 167, 306, 467, 662
TspDTI	ATGAA	2 cut(s)	74, 689
TspRI	CASTG	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	639
XceI	RCATGY	4 cut(s)	275, 435, 484, 529
XspI	CTAG	2 cut(s)	536, 629
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.