AT1G51410

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000539
Physical Location & Seq
Forward (+)
19059720 .. 19061714
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51410.1

Sequence Viewer

Length: 978 bp
ATGAGCAGCGAAGAAGAGAAGACAGTGTGTGTGACAGGAGCTTCAGGTTACATTGCTTCATGGATCGTTAAGCTTCTTCTTCTCCGTGGTTACACCGTTAAAGCCTCTGTTCGTGATCCAAATGATCCAAGGAAAACAGAGCATTTGCTTGCATTGGAAGGAGCAGAGGAAAGGCTTAAATTGTTCAAAGCAAACTTGTTAGAAGAAGGCTCTTTCGATTCAGCAATCGATGGTTGCGAAGGAGTTTTCCACACCGCATCGCCATTCTATCATGACGTCAAGGACCCTCAGGCTGAGTTACTTGATCCGGCAGTGAAAGGAACAATCAATGTTCTAAGCTCTTGTTTGAAGACTTCCTCGGTTAAGAGAGTCGTCTTAACCTCATCGATAGCAGCTGTTGCTTTCAATGGAATGCCTCGAACACCCGAAACCATAGTTGACGAAACTTGGTTCGCCGATCCTGACTATTGCAGAGCTTCCAAGCTATGGTATGTACTCTCGAAGACATTAGCTGAAAACGCAGCGTGGAAATTCGCAAAAGAGAACAATTTACAGCTGGTTTCGATAAATCCGGCTATGGTGATTGGTCCTCTCTTACAGCCAACGCTAAACACTAGTGCTGCTGCAGTACTAAGCTTGATCAAAGGAGCACAAACGTTTCCTAATGCGACGTTCGGGTGGGTTAACGTTAAAGATGTAGCGAACGCTCATATTCAAGCGTTTGAGAATCCAGATGCTGATGGGAGATACTGTTTAGTGGAGAGAGTTGCTCATTACTCTGAAGTTGTTAACATTTTGCATGATCTTTACCCTGATTTTCAACTCCCTGAGAAGTGTGCAGATGAAAAGATATATATTCCAACATATAAAGTGTCTAAAGAGAAAGCAGAGTCTCTTGGGGTTGAGTTTGTGCCATTGGAAGTTAGCATTAAAGAGACTGTAGAGAGCTTGAGAGATAAAGGGTTCATCAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

325

Amino Acids

35.92

Weight (kDa)

5.31

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 106 2.8e-10 NmrA-like family
Epimerase PF01370 9 - 247 1.3e-21 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 243 3.1e-18 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 11 - 205 2.1e-10 Male sterility protein
GDP_Man_Dehyd PF16363 11 - 263 7.8e-09 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 13 - 133 1.1e-10 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 1 cut(s) 255
AclI AACGTT 2 cut(s) 656, 687
AclWI GGATC 5 cut(s) 71, 110, 119, 299, 452
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 2 cut(s) 27, 801
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 2 cut(s) 495, 630
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 5 cut(s) 187, 349, 406, 716, 821
AhlI ACTAGT 1 cut(s) 614
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 2 cut(s) 897, 929
AlwI GGATC 5 cut(s) 71, 110, 119, 299, 452
AlwNI CAGNNNCTG 1 cut(s) 737
ApeKI GCWGC 5 cut(s) 6, 392, 521, 620, 623
ApoI RAATTY 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 283, 587
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 2 cut(s) 283, 587
AxyI CCTNAGG 1 cut(s) 288
BbsI GAAGAC 3 cut(s) 26, 356, 509
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 5 cut(s) 18, 404, 533, 607, 610
BccI CCATC 2 cut(s) 224, 734
BclI TGATCA 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 897, 929
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 2 cut(s) 624, 939
BisI GCNGC 5 cut(s) 7, 393, 522, 621, 624
BlsI GCNGC 5 cut(s) 8, 394, 523, 622, 625
BmcAI AGTACT 1 cut(s) 630
Bme18I GGWCC 2 cut(s) 283, 587
BmgT120I GGNCC 2 cut(s) 283, 587
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 2 cut(s) 266, 724
BpiI GAAGAC 3 cut(s) 26, 356, 509
BplI GAGNNNNNCTC 2 cut(s) 754, 786
BpuEI CTTGAG 1 cut(s) 970
Bsa29I ATCGAT 2 cut(s) 228, 386
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 85, 128, 357
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse21I CCTNAGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 51
BseCI ATCGAT 2 cut(s) 228, 386
BseDI CCNNGG 3 cut(s) 85, 128, 357
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 3 cut(s) 285, 302, 819
BseXI GCAGC 5 cut(s) 18, 404, 533, 607, 610
BsgI GTGCAG 1 cut(s) 858
BshVI ATCGAT 2 cut(s) 228, 386
BsiHKAI GWGCWC 1 cut(s) 652
BsiSI CCGG 2 cut(s) 308, 572
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 2 cut(s) 897, 929
BsmI GAATGC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
BspACI CCGC 1 cut(s) 255
BspCNI CTCAG 3 cut(s) 286, 301, 820
BspDI ATCGAT 2 cut(s) 228, 386
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 5 cut(s) 71, 110, 119, 299, 452
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 85, 128, 357
BssMI GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 25, 97, 752, 940
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 5 cut(s) 288, 294, 335, 632, 828
BstDSI CCRYGG 1 cut(s) 85
BstKTI GATC 7 cut(s) 66, 118, 127, 307, 460, 642, 805
BstMAI GTCTC 2 cut(s) 897, 929
BstMBI GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
BstMWI GCNNNNNNNGC 2 cut(s) 398, 518
BstSFI CTRYAG 2 cut(s) 624, 939
BstV1I GCAGC 5 cut(s) 18, 404, 533, 607, 610
BstV2I GAAGAC 3 cut(s) 26, 356, 509
Bsu15I ATCGAT 2 cut(s) 228, 386
Bsu36I CCTNAGG 1 cut(s) 288
BsuTUI ATCGAT 2 cut(s) 228, 386
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 30, 318
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 737
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 283, 587
ClaI ATCGAT 2 cut(s) 228, 386
Csp6I GTAC 2 cut(s) 494, 629
CviAII CATG 3 cut(s) 60, 272, 800
CviQI GTAC 2 cut(s) 494, 629
DdeI CTNAG 5 cut(s) 288, 294, 335, 632, 828
DpnI GATC 7 cut(s) 65, 117, 126, 306, 459, 641, 804
DpnII GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 283, 587
Eco57I CTGAAG 2 cut(s) 27, 801
Eco81I CCTNAGG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 3 cut(s) 63, 275, 803
FatI CATG 3 cut(s) 59, 271, 799
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 5 cut(s) 7, 393, 522, 621, 624
Fsp4HI GCNGC 5 cut(s) 7, 393, 522, 621, 624
FspBI CTAG 1 cut(s) 615
GluI GCNGC 5 cut(s) 7, 393, 522, 621, 624
HapII CCGG 2 cut(s) 308, 572
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 3 cut(s) 63, 275, 803
HincII GTYRAC 3 cut(s) 439, 685, 790
HindII GTYRAC 3 cut(s) 439, 685, 790
HindIII AAGCTT 2 cut(s) 71, 634
HinfI GANTC 4 cut(s) 218, 369, 727, 890
HpaI GTTAAC 2 cut(s) 685, 790
HpaII CCGG 2 cut(s) 308, 572
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 3 cut(s) 439, 685, 790
Hpy188I TCNGA 2 cut(s) 781, 971
Hpy188III TCNNGA 5 cut(s) 113, 272, 461, 499, 731
Hpy8I GTNNAC 3 cut(s) 439, 685, 790
Hpy99I CGWCG 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 152, 200, 233
HpyCH4III ACNGT 4 cut(s) 25, 97, 752, 940
HpyCH4IV ACGT 4 cut(s) 276, 656, 671, 687
HpyCH4V TGCA 5 cut(s) 152, 471, 626, 799, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 518
HpyF3I CTNAG 5 cut(s) 288, 294, 335, 632, 828
HpySE526I ACGT 4 cut(s) 276, 656, 671, 687
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 3 cut(s) 63, 275, 803
Ksp22I TGATCA 1 cut(s) 639
KspAI GTTAAC 2 cut(s) 685, 790
Kzo9I GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
LmnI GCTCC 3 cut(s) 38, 161, 647
Lsp1109I GCAGC 5 cut(s) 18, 404, 533, 607, 610
LweI GCATC 2 cut(s) 266, 724
MaeI CTAG 1 cut(s) 615
MaeII ACGT 4 cut(s) 276, 656, 671, 687
MaeIII GTNAC 4 cut(s) 31, 47, 89, 297
MalI GATC 7 cut(s) 65, 117, 126, 306, 459, 641, 804
MboI GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
MboII GAAGA 8 cut(s) 23, 26, 31, 68, 71, 215, 361, 514
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 3 cut(s) 179, 530, 547
MlyI GAGTC 2 cut(s) 378, 899
MmeI TCCRAC 1 cut(s) 884
MnlI CCTC 7 cut(s) 115, 160, 297, 367, 391, 426, 600
MseI TTAA 9 cut(s) 69, 99, 177, 363, 377, 684, 690, 789, 930
MspA1I CMGCKG 2 cut(s) 395, 556
MspI CCGG 2 cut(s) 308, 572
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 398, 518
NdeII GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
NlaIII CATG 3 cut(s) 63, 275, 803
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 31
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 218, 727
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 5 cut(s) 8, 394, 523, 622, 625
PleI GAGTC 2 cut(s) 377, 898
PpsI GAGTC 2 cut(s) 377, 898
PpuMI RGGWCCY 1 cut(s) 283
Psp1406I AACGTT 2 cut(s) 656, 687
Psp5II RGGWCCY 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 283, 587
PspPPI RGGWCCY 1 cut(s) 283
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 737
PvuII CAGCTG 2 cut(s) 395, 556
RsaI GTAC 2 cut(s) 495, 630
RsaNI GTAC 2 cut(s) 494, 629
SaqAI TTAA 9 cut(s) 69, 99, 177, 363, 377, 684, 690, 789, 930
SatI GCNGC 5 cut(s) 7, 393, 522, 621, 624
Sau3AI GATC 7 cut(s) 63, 115, 124, 304, 457, 639, 802
Sau96I GGNCC 2 cut(s) 283, 587
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 2 cut(s) 378, 899
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 2 cut(s) 266, 724
SfcI CTRYAG 2 cut(s) 624, 939
SinI GGWCC 2 cut(s) 283, 587
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 3 cut(s) 179, 530, 547
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 4 cut(s) 25, 97, 752, 940
TaiI ACGT 4 cut(s) 279, 659, 674, 690
TaqI TCGA 6 cut(s) 216, 228, 386, 418, 500, 563
TasI AATT 3 cut(s) 179, 530, 547
TatI WGTACW 2 cut(s) 493, 628
TfiI GAWTC 2 cut(s) 218, 727
Tru1I TTAA 9 cut(s) 69, 99, 177, 363, 377, 684, 690, 789, 930
Tru9I TTAA 9 cut(s) 69, 99, 177, 363, 377, 684, 690, 789, 930
TscAI CASTG 2 cut(s) 30, 318
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 5 cut(s) 6, 392, 521, 620, 623
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 48, 858, 955
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 2 cut(s) 30, 318
Van91I CCANNNNNTGG 1 cut(s) 486
VpaK11BI GGWCC 2 cut(s) 283, 587
XapI RAATTY 1 cut(s) 530
XspI CTAG 1 cut(s) 615
ZraI GACGTC 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.