FvH4_7g01561

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000539
Physical Location & Seq
Reverse (-)
1965188 .. 1966279
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01561.t1

Sequence Viewer

Length: 603 bp
ATGTCCTTGGATTATGTTATCGCAGCAGTTATATTTAATGGAAACCATCTTGCTCCTGATGTAATAGTGGATGAATCTTGGTTTTCAGATCCTGCTATTTGTGAGAAAGCGAAGCTTTGGTATATGCTTTCAAAGACATTAGCTGAAGAAGCTGCTTGGAGGATTGCAAAAGAGAAAGGCATTGATATTATAACAATAAATCCAGGATTGGTGATCGGCCCTCTCTTACAGCCAACTCTGAACACAAGTGTGGAAAAAATTCTGAATCTCGTGGATGGGACTGAAAAATTTCCCAACACAACTTATGTATTTGTTGATGTTAGAGATGTTGCGATTGCGCATATTCTAGCTTTTGAGAACCCCTCAGCTAGTGGACGTTATTGTTTAGCTGAAAGCGTAAAACACTGTTCAGAGGCTGTGAAAATGTTGAGTGATATCTCCCCTGCACTCAATCTTCCAGAGAAATGTGCAGATGACAAACCTTTCACACCAACTTACCAGGTATCCAAGGAAAGAGCCCAAACTTTGGGTGTAAAGCTTACTCCACTTGAAGTGTCTTTGAAGGATACTCTTGAAAGTTTGAAGAGCAAGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

5.13

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
Acc16I TGCGCA 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 526
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 258, 287
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 5 cut(s) 132, 551, 562, 575, 583
AjnI CCWGG 2 cut(s) 202, 498
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 7 cut(s) 115, 143, 152, 350, 368, 389, 538
AluI AGCT 7 cut(s) 115, 143, 152, 350, 368, 389, 538
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 92, 416
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 23, 152
ApoI RAATTY 2 cut(s) 258, 287
Asp700I GAANNNNTTC 3 cut(s) 258, 288, 596
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 223
BanII GRGCYC 1 cut(s) 520
BauI CACGAG 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 35, 139
BccI CCATC 2 cut(s) 54, 269
BciT130I CCWGG 2 cut(s) 204, 500
BciVI GTATCC 2 cut(s) 514, 559
BfaI CTAG 2 cut(s) 347, 369
BfuI GTATCC 2 cut(s) 514, 559
BisI GCNGC 2 cut(s) 24, 153
BlsI GCNGC 2 cut(s) 25, 154
Bme1390I CCNGG 2 cut(s) 204, 500
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 204, 500
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 6, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 526
BseBI CCWGG 2 cut(s) 204, 500
BseDI CCNNGG 2 cut(s) 6, 507
BseGI GGATG 2 cut(s) 76, 280
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 35, 139
BsgI GTGCAG 2 cut(s) 429, 489
BshFI GGCC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 2 cut(s) 88, 213
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 377
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 6, 507
BssMI GATC 2 cut(s) 88, 213
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 2 cut(s) 6, 507
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 204, 500
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 578
BstDEI CTNAG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 76, 280
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 91, 216
BstMBI GATC 2 cut(s) 88, 213
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 2 cut(s) 204, 500
BstSCI CCNGG 2 cut(s) 202, 498
BstV1I GCAGC 2 cut(s) 35, 139
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuI GTATCC 2 cut(s) 514, 559
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 76, 280
BtsIMutI CAGTG 1 cut(s) 403
CaiI CAGNNNCTG 2 cut(s) 92, 416
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 498
DdeI CTNAG 1 cut(s) 364
DpnI GATC 2 cut(s) 90, 215
DpnII GATC 2 cut(s) 88, 213
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 2 cut(s) 6, 507
Eco24I GRGCYC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 202, 498
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 6, 507
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 6, 507
FaiI YATR 7 cut(s) 15, 32, 123, 125, 191, 306, 342
FalI AAGNNNNNCTT 3 cut(s) 99, 131, 581
FaqI GGGAC 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 24, 153
FokI GGATG 2 cut(s) 83, 287
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 24, 153
FspBI CTAG 2 cut(s) 347, 369
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 24, 153
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 2 cut(s) 113, 536
HinfI GANTC 2 cut(s) 74, 265
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 4 cut(s) 88, 240, 264, 412
Hpy188III TCNNGA 3 cut(s) 56, 458, 572
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 1 cut(s) 556
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 167, 446, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 364
HpySE526I ACGT 1 cut(s) 376
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 88, 213
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 8 cut(s) 69, 105, 189, 216, 456, 471, 485, 512
Lsp1109I GCAGC 2 cut(s) 35, 139
MabI ACCWGGT 1 cut(s) 498
MaeI CTAG 2 cut(s) 347, 369
MaeII ACGT 1 cut(s) 376
MalI GATC 2 cut(s) 90, 215
MboI GATC 2 cut(s) 88, 213
MboII GAAGA 4 cut(s) 158, 446, 589, 595
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 2 cut(s) 258, 287
MnlI CCTC 4 cut(s) 153, 231, 373, 406
MroXI GAANNNNTTC 3 cut(s) 258, 288, 596
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 248
MspR9I CCNGG 2 cut(s) 204, 500
MvaI CCWGG 2 cut(s) 204, 500
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 2 cut(s) 88, 213
NsbI TGCGCA 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 578
PdmI GAANNNNTTC 3 cut(s) 258, 288, 596
PfeI GAWTC 2 cut(s) 74, 265
PflMI CCANNNNNTGG 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 25, 154
PsiI TTATAA 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 202, 498
PspGI CCWGG 2 cut(s) 202, 498
PspPI GGNCC 1 cut(s) 218
PstNI CAGNNNCTG 2 cut(s) 92, 416
PsuI RGATCY 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 24, 153
Sau3AI GATC 2 cut(s) 88, 213
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 204, 500
SduI GDGCHC 1 cut(s) 520
SexAI ACCWGGT 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 2 cut(s) 258, 287
SspMI CTAG 2 cut(s) 347, 369
StyD4I CCNGG 2 cut(s) 202, 498
StyI CCWWGG 2 cut(s) 6, 507
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 379
TasI AATT 2 cut(s) 258, 287
TfiI GAWTC 2 cut(s) 74, 265
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 410
TseI GCWGC 2 cut(s) 23, 152
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 526
XapI RAATTY 2 cut(s) 258, 287
XmnI GAANNNNTTC 3 cut(s) 258, 288, 596
XspI CTAG 2 cut(s) 347, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.