RchiOBHm_Chr1g0317461

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000539
Physical Location & Seq
Reverse (-)
5027699 .. 5029362
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54778

Sequence Viewer

Length: 489 bp
ATGCTTTCAAGCCATAAAAATACATTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAAGAGAAAGGAATTGATATTATTACAATAAATCCGGGATGGGTGATCGGCCCCCTTTTACAGCCAACTCTGAACCTTAGTGTTGAAATAGTTCTGAAACTCGTAAACGGGACCGAAACGTTTCCCAACAGAACTTACAGACTTGTTGATGTTAGAGATGTTGCTAATGCACATATTCTAGCCCTTGAAAACCCATCAGCTAGTGGACGTTATTGTTTAGTTGGAAGCGTAAAACACTGTTCAGAGGTCGTGAAAATGTTGTACGAGATTTCCCCTGCTCTCAATCTCCCAGATAAATGTGCAGACGACAAGCCTTTCACACCAACTCATCAGGTATCCAAGGAAAGAACCCAAACTTTGGGTGTAAGGTATACTCCGCTAGAAGTGTCTCTGAAGGATACTGTTGAAAGTTTGAATAACAAGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

6.9

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 412
AccI GTMKAC 1 cut(s) 425
AciI CCGC 1 cut(s) 431
AclI AACGTT 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 5 cut(s) 9, 140, 242, 461, 469
AluBI AGCT 3 cut(s) 29, 38, 254
AluI AGCT 3 cut(s) 29, 38, 254
Alw26I GTCTC 1 cut(s) 447
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 3 cut(s) 144, 174, 482
AspS9I GGNCC 2 cut(s) 104, 165
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 87, 256
BciVI GTATCC 2 cut(s) 400, 445
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 3 cut(s) 233, 255, 434
BfuI GTATCC 2 cut(s) 400, 445
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 104, 165
BmiI GGNNCC 2 cut(s) 106, 166
BmrFI CCNGG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 106, 166
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 99
BssNAI GTATAC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 393
Bst1107I GTATAC 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 293, 457
BstDEI CTNAG 2 cut(s) 30, 131
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 25
BstZ17I GTATAC 1 cut(s) 426
BsuI GTATCC 2 cut(s) 400, 445
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 104, 165
Csp6I GTAC 1 cut(s) 316
CviJI RGCY 8 cut(s) 12, 29, 38, 105, 118, 236, 254, 367
CviKI_1 RGCY 8 cut(s) 12, 29, 38, 105, 118, 236, 254, 367
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 30, 131
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaiI YATR 3 cut(s) 15, 228, 426
FalI AAGNNNNNCTT 1 cut(s) 467
FaqI GGGAC 1 cut(s) 178
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 233, 255, 434
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 89
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 160, 260, 426
Hpy188I TCNGA 4 cut(s) 126, 150, 298, 447
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 3 cut(s) 160, 260, 426
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 2 cut(s) 293, 457
HpyCH4IV ACGT 2 cut(s) 173, 262
HpyCH4V TGCA 3 cut(s) 53, 224, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 30, 131
HpySE526I ACGT 2 cut(s) 173, 262
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 102, 342, 357, 371
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 3 cut(s) 233, 255, 434
MaeII ACGT 2 cut(s) 173, 262
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 475
MluCI AATT 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 2 cut(s) 25, 292
MroXI GAANNNNTTC 3 cut(s) 144, 174, 482
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 106, 166
PdmI GAANNNNTTC 3 cut(s) 144, 174, 482
PflMI CCANNNNNTGG 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 1 cut(s) 40
Psp1406I AACGTT 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 106, 166
PspPI GGNCC 2 cut(s) 104, 165
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 104, 165
ScrFI CCNGG 1 cut(s) 90
SetI ASST 9 cut(s) 31, 40, 132, 176, 256, 265, 303, 390, 425
SinI GGWCC 1 cut(s) 165
Sse9I AATT 1 cut(s) 66
SsiI CCGC 1 cut(s) 431
SspMI CTAG 3 cut(s) 233, 255, 434
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 293, 457
TaiI ACGT 2 cut(s) 176, 265
TaqII GACCGA 1 cut(s) 182
TasI AATT 1 cut(s) 66
TscAI CASTG 1 cut(s) 296
TseI GCWGC 1 cut(s) 38
TspRI CASTG 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 425
XmnI GAANNNNTTC 3 cut(s) 144, 174, 482
XspI CTAG 3 cut(s) 233, 255, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.