Rw1G002060

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000539
Physical Location & Seq
Reverse (-)
3720228 .. 3733943
13716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002060.1

Sequence Viewer

Length: 543 bp
ATGCTTCCAAAGACATTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAAGAGAAAGGAATTGATATTATAACAATAAATTCAGGATGGGTGATCGGCCCTCTTTTACAGCCAACTCTGAACTTTAGTGATGAAATAGTTCTGAAACTCGTAAATGGGACCGAAAAGTTTCCCAACAAAACTTACGGATTTGTTGATGTTAGAGATGTTGCTAATGCCCGTATTCTAGCCTTTGAAAACCTATCAGCTAGTGGACGTTATTGTTTAGTTGGAAGCATAAAACAATGTTCAGAGGTTGTGAAAATGTTGCACGAGATCTCCCCTGCTCTCAATCTTCCAGATAAGCAAGCAGCTGAGGGATCCTTGTTGTCATCATTATCGGAGAGACTGGTTCCTGTCGAAACAAGGTCGTGTGGTTTAAAATGGCATCCTAACAAGCATCAAGAATCTTCACAGGAAATGGCAGCAGAGAAATTTAGACTTTGTGTTAATGCATACAATTCTCTGCAGCATAAGCTGTTGCAAAAGGTTGTGGTTTGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

8.25

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AclWI GGATC 2 cut(s) 351, 364
AcsI RAATTY 2 cut(s) 76, 470
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 5 cut(s) 20, 29, 245, 350, 514
AluI AGCT 5 cut(s) 20, 29, 245, 350, 514
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 2 cut(s) 351, 364
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 4 cut(s) 29, 347, 461, 505
ApoI RAATTY 2 cut(s) 76, 470
Asp700I GAANNNNTTC 2 cut(s) 135, 165
AspS9I GGNCC 2 cut(s) 95, 156
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 156
BamHI GGATCC 1 cut(s) 356
BauI CACGAG 1 cut(s) 308
BbvCI CCTCAGC 2 cut(s) 21, 351
BbvI GCAGC 4 cut(s) 16, 359, 473, 517
BccI CCATC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 2 cut(s) 224, 246
BfmI CTRYAG 1 cut(s) 503
BglII AGATCT 1 cut(s) 312
BisI GCNGC 4 cut(s) 30, 348, 462, 506
BlsI GCNGC 4 cut(s) 31, 349, 463, 507
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 95, 156
BmiI GGNNCC 3 cut(s) 157, 358, 390
BmsI GCATC 2 cut(s) 433, 445
Bpu10I CCTNAGC 2 cut(s) 21, 351
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 89, 424
BseMII CTCAG 2 cut(s) 12, 342
BseNI ACTGG 1 cut(s) 390
BseXI GCAGC 4 cut(s) 16, 359, 473, 517
BshFI GGCC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 90, 312, 356
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 13, 343
BspLI GGNNCC 3 cut(s) 157, 358, 390
BspMAI CTGCAG 1 cut(s) 507
BspPI GGATC 2 cut(s) 351, 364
BsrI ACTGG 1 cut(s) 390
BssMI GATC 3 cut(s) 90, 312, 356
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 21, 351
BstF5I GGATG 2 cut(s) 89, 424
BstKTI GATC 3 cut(s) 93, 315, 359
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 3 cut(s) 90, 312, 356
BstMWI GCNNNNNNNGC 2 cut(s) 26, 511
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 4 cut(s) 16, 359, 473, 517
BstX2I RGATCY 2 cut(s) 312, 356
BstYI RGATCY 2 cut(s) 312, 356
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 89, 424
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 95, 156
CviAII CATG 1 cut(s) 540
CviJI RGCY 8 cut(s) 20, 29, 96, 109, 227, 245, 350, 514
CviKI_1 RGCY 8 cut(s) 20, 29, 96, 109, 227, 245, 350, 514
DdeI CTNAG 2 cut(s) 21, 351
DpnI GATC 3 cut(s) 92, 314, 358
DpnII GATC 3 cut(s) 90, 312, 356
DraI TTTAAA 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 493
FaeI CATG 1 cut(s) 543
FaiI YATR 5 cut(s) 68, 275, 493, 510, 541
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 539
Fnu4HI GCNGC 4 cut(s) 30, 348, 462, 506
FokI GGATG 2 cut(s) 96, 411
Fsp4HI GCNGC 4 cut(s) 30, 348, 462, 506
FspBI CTAG 2 cut(s) 224, 246
GluI GCNGC 4 cut(s) 30, 348, 462, 506
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 1 cut(s) 543
HinfI GANTC 1 cut(s) 443
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 4 cut(s) 117, 141, 289, 379
Hpy188III TCNNGA 3 cut(s) 81, 335, 440
Hpy8I GTNNAC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 6 cut(s) 44, 307, 491, 505, 520, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 511
HpyF3I CTNAG 2 cut(s) 21, 351
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 1 cut(s) 543
Kzo9I GATC 3 cut(s) 90, 312, 356
LpnPI CCDG 6 cut(s) 66, 333, 348, 371, 405, 437
Lsp1109I GCAGC 4 cut(s) 16, 359, 473, 517
LweI GCATC 2 cut(s) 433, 445
MaeI CTAG 2 cut(s) 224, 246
MaeII ACGT 1 cut(s) 253
MalI GATC 3 cut(s) 92, 314, 358
MboI GATC 3 cut(s) 90, 312, 356
MboII GAAGA 2 cut(s) 323, 438
MflI RGATCY 2 cut(s) 312, 356
MluCI AATT 4 cut(s) 57, 76, 470, 496
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 16, 108, 283, 346
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 2 cut(s) 135, 165
MseI TTAA 2 cut(s) 416, 486
MspA1I CMGCKG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 26, 511
NdeII GATC 3 cut(s) 90, 312, 356
NlaIII CATG 1 cut(s) 543
NlaIV GGNNCC 3 cut(s) 157, 358, 390
NsiI ATGCAT 1 cut(s) 493
PdmI GAANNNNTTC 2 cut(s) 135, 165
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 4 cut(s) 31, 349, 463, 507
PsiI TTATAA 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 157, 358, 390
PspPI GGNCC 2 cut(s) 95, 156
PstI CTGCAG 1 cut(s) 507
PsuI RGATCY 2 cut(s) 312, 356
PvuII CAGCTG 1 cut(s) 350
SaqAI TTAA 2 cut(s) 416, 486
SatI GCNGC 4 cut(s) 30, 348, 462, 506
Sau3AI GATC 3 cut(s) 90, 312, 356
Sau96I GGNCC 2 cut(s) 95, 156
SfaNI GCATC 2 cut(s) 433, 445
SfcI CTRYAG 1 cut(s) 503
SinI GGWCC 1 cut(s) 156
Sse9I AATT 4 cut(s) 57, 76, 470, 496
SspMI CTAG 2 cut(s) 224, 246
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 396
TaqII GACCGA 1 cut(s) 173
TasI AATT 4 cut(s) 57, 76, 470, 496
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 416, 486
Tru9I TTAA 2 cut(s) 416, 486
TseI GCWGC 4 cut(s) 29, 347, 461, 505
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 2 cut(s) 76, 470
XmnI GAANNNNTTC 2 cut(s) 135, 165
XspI CTAG 2 cut(s) 224, 246
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.