Rmu_co8392933.1_g000001

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8392933.1
OG0000539
Physical Location & Seq
Forward (+)
1 .. 927
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8392933.1_g000001.1.cds

Sequence Viewer

Length: 331 bp
attagctgaggaagctgcttggaagtttgcaaaagaaaaaggaattgatattattacaataaatccgggatgggtgatcggccctctcttacagccaactctgaacttgagtgcggaactagttctgaaactcgtaaatgggaccgaaaagtttcccaacagaacttacagacttgttgatgttagagatgttgctattgcacatattctagcctttgaaaacccatcagctagtggacgttattgtttagttggaagcgtaaaacactgttcagaggttgtgaaaatgttgtacgagatctcccctgctctcaatcttccagataagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

6.93

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 1 cut(s) 219
AhlI ACTAGT 1 cut(s) 119
AluBI AGCT 3 cut(s) 6, 15, 231
AluI AGCT 3 cut(s) 6, 15, 231
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 15
Asp700I GAANNNNTTC 2 cut(s) 121, 151
AspS9I GGNCC 2 cut(s) 81, 142
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 2
BccI CCATC 2 cut(s) 64, 233
BcnI CCSGG 1 cut(s) 67
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 3 cut(s) 120, 210, 232
BglII AGATCT 1 cut(s) 298
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 81, 142
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
BseGI GGATG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 2
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 76, 298
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 143
BssMI GATC 2 cut(s) 76, 298
Bst4CI ACNGT 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 2 cut(s) 79, 301
BstMBI GATC 2 cut(s) 76, 298
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 2
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 81, 142
Csp6I GTAC 1 cut(s) 293
CviJI RGCY 6 cut(s) 6, 15, 82, 95, 213, 231
CviKI_1 RGCY 6 cut(s) 6, 15, 82, 95, 213, 231
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 7
DpnI GATC 2 cut(s) 78, 300
DpnII GATC 2 cut(s) 76, 298
Eco47I GGWCC 1 cut(s) 142
FaiI YATR 1 cut(s) 205
FaqI GGGAC 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 3 cut(s) 120, 210, 232
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 66
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 103, 127, 275
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 30, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 1 cut(s) 239
Kzo9I GATC 2 cut(s) 76, 298
LpnPI CCDG 2 cut(s) 79, 319
Lsp1109I GCAGC 1 cut(s) 2
MaeI CTAG 3 cut(s) 120, 210, 232
MaeII ACGT 1 cut(s) 239
MalI GATC 2 cut(s) 78, 300
MboI GATC 2 cut(s) 76, 298
MboII GAAGA 1 cut(s) 309
MflI RGATCY 1 cut(s) 298
MluCI AATT 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 2 cut(s) 94, 269
MroXI GAANNNNTTC 2 cut(s) 121, 151
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 67
NdeII GATC 2 cut(s) 76, 298
NlaIV GGNNCC 1 cut(s) 143
PdmI GAANNNNTTC 2 cut(s) 121, 151
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 2 cut(s) 81, 142
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 76, 298
Sau96I GGNCC 2 cut(s) 81, 142
ScrFI CCNGG 1 cut(s) 67
SetI ASST 5 cut(s) 8, 17, 233, 242, 280
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 1 cut(s) 43
SsiI CCGC 1 cut(s) 114
SspMI CTAG 3 cut(s) 120, 210, 232
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 242
TaqII GACCGA 1 cut(s) 159
TasI AATT 1 cut(s) 43
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 15
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 142
XmnI GAANNNNTTC 2 cut(s) 121, 151
XspI CTAG 3 cut(s) 120, 210, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.