Rh1BG024200

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000539
Physical Location & Seq
Reverse (-)
3189298 .. 3191210
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG024200.1

Sequence Viewer

Length: 837 bp
ATGAGCTGTGGAGAAAGCAAGGTTGTGTGTGTGACAGGAGCATCTGGTTTCATAGCGTCATGGCTGGTGAAGATTTTATTGCAAAGAGGTTTTACTGTCAAAGCCACTGTTCGGGACCCAAATGATCAAAAGAAAACAGATCACCTACTATCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAAGGTTCTTTTGACCCTGTCGTTGATGGGTGTGAAGGTGTTTTTCATACAGCATCTCCTGTCGTACTCTCATCTACTAATCCGCAGGCAGAATTAATTGACCCTGCTTTGAAGGGAACGCTTAATGTCCTTGGATCGTGTGTGAAGGTTCAGTCTATCAAAAGGGTGGTTATAACATCCTCTATAGCAGCAGTTGCATTTAATGGAAAACCTCTTACTGCTGATGTAATAATCGATGAATCTTGGTTTTCAGATCCTGCTTTTTGTGAAAAAGCGAAGCTTTGGTATATCCTTTCAAAGACATTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAAGAGAAAGGAATTGATATTATTACAATAAATCCGGGATGGGTGATCGGCCCTCTTTTACAGCCAACTCTGAACCTTAGTGATGAAATAGTTCTGAAACTCGTAAATGGGACCGAAACGTTTCCCAACAGAACTTACAGACTTGTTGATGTTAGAGATGTTGCTAATGCACATATTCTAGCCCTTGAAAACCCATCAGCTAGTGGACGTTATTGTTTAGTTGGAAGCGTAAAACACTGTTCAGAGGTCGTGAAAATGTTGTACGAGATCTCCCCTGCTCTCAATCTCCCAGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

278

Amino Acids

30.2

Weight (kDa)

5.99

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 105 5e-09 NmrA-like family
Epimerase PF01370 9 - 247 4.5e-23 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 243 1.3e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 11 - 200 1.2e-11 Male sterility protein
GDP_Man_Dehyd PF16363 11 - 129 1.1e-10 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 13 - 134 2.6e-10 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AciI CCGC 1 cut(s) 287
AclI AACGTT 1 cut(s) 656
AclWI GGATC 2 cut(s) 346, 452
AfaI GTAC 2 cut(s) 270, 800
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 4 cut(s) 187, 316, 501, 725
AluBI AGCT 5 cut(s) 6, 484, 512, 521, 737
AluI AGCT 5 cut(s) 6, 484, 512, 521, 737
AlwI GGATC 2 cut(s) 346, 452
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 392, 521
AseI ATTAAT 1 cut(s) 299
Asp700I GAANNNNTTC 3 cut(s) 174, 627, 657
AspS9I GGNCC 3 cut(s) 115, 587, 648
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 3 cut(s) 79, 134, 592
AvaII GGWCC 2 cut(s) 115, 648
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 404, 508
BccI CCATC 4 cut(s) 152, 224, 570, 739
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 573
BfaI CTAG 2 cut(s) 716, 738
BfmI CTRYAG 1 cut(s) 387
BglII AGATCT 1 cut(s) 804
BisI GCNGC 2 cut(s) 393, 522
BlsI GCNGC 2 cut(s) 394, 523
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 2 cut(s) 115, 648
BmgT120I GGNCC 3 cut(s) 115, 587, 648
BmiI GGNNCC 3 cut(s) 116, 117, 649
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 50, 266
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 573
Bsa29I ATCGAT 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 334
BsaXI ACNNNNNCTCC 4 cut(s) 244, 274, 791, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 380, 581
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 504
BseXI GCAGC 2 cut(s) 404, 508
BshFI GGCC 1 cut(s) 588
BshVI ATCGAT 1 cut(s) 438
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 2 cut(s) 128, 661
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 128, 661
BsnI GGCC 1 cut(s) 588
Bsp143I GATC 6 cut(s) 124, 139, 338, 457, 582, 804
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 438
BspLI GGNNCC 3 cut(s) 116, 117, 649
BspPI GGATC 2 cut(s) 346, 452
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 6 cut(s) 124, 139, 338, 457, 582, 804
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 3 cut(s) 97, 109, 776
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 513, 614
BstF5I GGATG 2 cut(s) 380, 581
BstKTI GATC 6 cut(s) 127, 142, 341, 460, 585, 807
BstMBI GATC 6 cut(s) 124, 139, 338, 457, 582, 804
BstMWI GCNNNNNNNGC 2 cut(s) 398, 518
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 404, 508
BstX2I RGATCY 2 cut(s) 457, 804
BstYI RGATCY 2 cut(s) 457, 804
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 1 cut(s) 588
BsuTUI ATCGAT 1 cut(s) 438
BtsCI GGATG 2 cut(s) 380, 581
BtsIMutI CAGTG 2 cut(s) 105, 772
Cac8I GCNNGC 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 461
Cfr13I GGNCC 3 cut(s) 115, 587, 648
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 1 cut(s) 45
Csp6I GTAC 2 cut(s) 269, 799
CviAII CATG 1 cut(s) 60
CviQI GTAC 2 cut(s) 269, 799
DdeI CTNAG 2 cut(s) 513, 614
DpnI GATC 6 cut(s) 126, 141, 340, 459, 584, 806
DpnII GATC 6 cut(s) 124, 139, 338, 457, 582, 804
Eco130I CCWWGG 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 115, 648
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 63
FaiI YATR 7 cut(s) 53, 61, 252, 377, 389, 492, 711
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 128, 661
FatI CATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 393, 522
FokI GGATG 2 cut(s) 367, 588
Fsp4HI GCNGC 2 cut(s) 393, 522
FspBI CTAG 2 cut(s) 716, 738
GluI GCNGC 2 cut(s) 393, 522
HaeIII GGCC 1 cut(s) 588
HapII CCGG 1 cut(s) 572
HgaI GACGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 1 cut(s) 443
HpaII CCGG 1 cut(s) 572
HphI GGTGA 3 cut(s) 79, 134, 592
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 4 cut(s) 457, 609, 633, 781
Hpy188III TCNNGA 2 cut(s) 113, 787
Hpy8I GTNNAC 1 cut(s) 743
HpyAV CCTTC 4 cut(s) 200, 233, 310, 343
HpyCH4III ACNGT 3 cut(s) 97, 109, 776
HpyCH4IV ACGT 2 cut(s) 656, 745
HpyCH4V TGCA 4 cut(s) 82, 401, 536, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 518
HpyF3I CTNAG 2 cut(s) 513, 614
HpySE526I ACGT 2 cut(s) 656, 745
Hsp92II CATG 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 6 cut(s) 124, 139, 338, 457, 582, 804
LmnI GCTCC 2 cut(s) 38, 161
Lsp1109I GCAGC 2 cut(s) 404, 508
LweI GCATC 2 cut(s) 50, 266
MaeI CTAG 2 cut(s) 716, 738
MaeII ACGT 2 cut(s) 656, 745
MaeIII GTNAC 1 cut(s) 31
MalI GATC 6 cut(s) 126, 141, 340, 459, 584, 806
MboI GATC 6 cut(s) 124, 139, 338, 457, 582, 804
MboII GAAGA 2 cut(s) 82, 215
MflI RGATCY 2 cut(s) 457, 804
MluCI AATT 3 cut(s) 296, 300, 549
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 6 cut(s) 80, 394, 426, 508, 600, 775
MroXI GAANNNNTTC 3 cut(s) 174, 627, 657
MseI TTAA 3 cut(s) 299, 327, 405
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 573
MwoI GCNNNNNNNGC 2 cut(s) 398, 518
NciI CCSGG 1 cut(s) 573
NdeII GATC 6 cut(s) 124, 139, 338, 457, 582, 804
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 3 cut(s) 116, 117, 649
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 3 cut(s) 174, 627, 657
PfeI GAWTC 1 cut(s) 443
PflFI GACNNNGTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 2 cut(s) 394, 523
PpuMI RGGWCCY 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 299
PsiI TTATAA 1 cut(s) 377
Psp1406I AACGTT 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 116, 117, 649
PspPI GGNCC 3 cut(s) 115, 587, 648
PspPPI RGGWCCY 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 461
PsuI RGATCY 2 cut(s) 457, 804
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 2 cut(s) 270, 800
RsaNI GTAC 2 cut(s) 269, 799
SaqAI TTAA 3 cut(s) 299, 327, 405
SatI GCNGC 2 cut(s) 393, 522
Sau3AI GATC 6 cut(s) 124, 139, 338, 457, 582, 804
Sau96I GGNCC 3 cut(s) 115, 587, 648
ScrFI CCNGG 1 cut(s) 573
SfaNI GCATC 2 cut(s) 50, 266
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 115, 648
Sse9I AATT 3 cut(s) 296, 300, 549
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 716, 738
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 97, 109, 776
TaiI ACGT 2 cut(s) 659, 748
TaqI TCGA 1 cut(s) 438
TaqII GACCGA 1 cut(s) 665
TasI AATT 3 cut(s) 296, 300, 549
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 3 cut(s) 299, 327, 405
Tru9I TTAA 3 cut(s) 299, 327, 405
TscAI CASTG 2 cut(s) 112, 779
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 392, 521
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 5 cut(s) 40, 167, 239, 456, 636
TspRI CASTG 2 cut(s) 112, 779
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 115, 648
VspI ATTAAT 1 cut(s) 299
XmnI GAANNNNTTC 3 cut(s) 174, 627, 657
XspI CTAG 2 cut(s) 716, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.