RLG00000030590

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000539
Physical Location & Seq
Forward (+)
63939498 .. 63941839
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030590

Sequence Viewer

Length: 906 bp
ATGAGCTGCGGAGAAAGCAAGGTTGTGTGTGTGACAGGAGCATCTGGGTTCATAGCATCATGGCTAGTCAAGCTCTTATTGCAACGAGGTTATACTGTCAAAGCCACTGTTCGGGACCCAAATGATCAAAACAAAACAGAGCACCTACTCTCATTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAAGGTTCTTTTGACCCTGTCGTTGATGGGTGTGAAGGTGTTTTTCATACAGCATCCCCTGTCCTACTCTCATCTACTAATCCGCAGTCTATCAAAAGGGTGGTTATAACATCCTCTATGGCAGCAGTTAAATTTAATGGAAAACCTCTTACTGCTGATGTAATAATCGATGAATCTTGGTTTTCAGATCCTGCTTTTTGTGAAAAAGAAAAGCTTTGGTATATGCTTTCAAAGACGTTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAAGAGAAAGGAATTGATATTATTACAATAAATCCGGGATGGGTGATCGGCCCTCCCTTACAGCCAACTCTGAACTTAACCGTGGAACTAGTTCTGAAACTCGTAAATGGGACCGAAAAGTTTCCCAACGAAAGCTACAGATTTGTTGATGTTAGAGATGTTGCTAATGCACATATTCTAGCCTTTGAAAACCCATCTGCTAGTGGACGTTATTGTTTAGTTGGAAGCGTAAAACACTGTTCAGAGGTTGTGAAAATGTTGCACGAGATCTTCCCTGCTCTCAATCTTCCAGATAAATGTGAAGATGACAAGCCTTTCACACCAACTTACCAGGTATCCAAGGATAGAACCCAAACTTTGGGTGTAAAATATACTCCGCTTGAAGTGTCTCTGAAGGATACTGTTGAAAGTTTGAAGGACAAGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

302

Amino Acids

33.43

Weight (kDa)

5.76

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 87 8.5e-08 NmrA-like family
Epimerase PF01370 9 - 225 1.7e-16 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 103 4.7e-06 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 11 - 86 9.1e-09 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 13 - 108 2.8e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 829
AciI CCGC 3 cut(s) 9, 287, 848
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 884
AfiI CCNNNNNNNGG 2 cut(s) 111, 829
AgsI TTSAA 6 cut(s) 187, 435, 659, 854, 878, 886
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 6 cut(s) 6, 73, 418, 446, 455, 606
AluI AGCT 6 cut(s) 6, 73, 418, 446, 455, 606
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 1 cut(s) 520
ApeKI GCWGC 3 cut(s) 6, 326, 455
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 4 cut(s) 174, 561, 591, 899
AspS9I GGNCC 3 cut(s) 115, 521, 582
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 2 cut(s) 115, 582
BauI CACGAG 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 338, 442
BccI CCATC 4 cut(s) 152, 224, 504, 673
BciT130I CCWGG 1 cut(s) 803
BciVI GTATCC 2 cut(s) 817, 862
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 864
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 4 cut(s) 65, 560, 650, 672
BfmI CTRYAG 1 cut(s) 607
BfuI GTATCC 2 cut(s) 817, 862
BglII AGATCT 1 cut(s) 738
BisI GCNGC 3 cut(s) 7, 327, 456
BlsI GCNGC 3 cut(s) 8, 328, 457
Bme1390I CCNGG 2 cut(s) 507, 803
Bme18I GGWCC 2 cut(s) 115, 582
BmgT120I GGNCC 3 cut(s) 115, 521, 582
BmiI GGNNCC 3 cut(s) 116, 117, 583
BmrFI CCNGG 2 cut(s) 507, 803
BmsI GCATC 3 cut(s) 50, 65, 266
Bpu10I CCTNAGC 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 507
Bsa29I ATCGAT 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 552, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 829
BseBI CCWGG 1 cut(s) 803
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 552, 810
BseGI GGATG 3 cut(s) 257, 314, 515
BseLI CCNNNNNNNGG 2 cut(s) 111, 829
BseMII CTCAG 1 cut(s) 438
BseXI GCAGC 2 cut(s) 338, 442
BshFI GGCC 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 2 cut(s) 128, 595
BslI CCNNNNNNNGG 2 cut(s) 111, 829
BsmAI GTCTC 1 cut(s) 864
BsmFI GGGAC 2 cut(s) 128, 595
BsnI GGCC 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 4 cut(s) 124, 391, 516, 738
BspACI CCGC 3 cut(s) 9, 287, 848
BspANI GGCC 1 cut(s) 522
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 372
BspLI GGNNCC 3 cut(s) 116, 117, 583
BspPI GGATC 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 552, 810
BssMI GATC 4 cut(s) 124, 391, 516, 738
BssSI CACGAG 1 cut(s) 734
BssT1I CCWWGG 1 cut(s) 810
Bst2BI CACGAG 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 5 cut(s) 97, 109, 553, 710, 874
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 3 cut(s) 257, 314, 515
BstKTI GATC 4 cut(s) 127, 394, 519, 741
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 4 cut(s) 124, 391, 516, 738
BstMWI GCNNNNNNNGC 4 cut(s) 15, 70, 79, 452
BstNI CCWGG 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 505, 801
BstSFI CTRYAG 1 cut(s) 607
BstV1I GCAGC 2 cut(s) 338, 442
BstX2I RGATCY 2 cut(s) 391, 738
BstYI RGATCY 2 cut(s) 391, 738
Bsu15I ATCGAT 1 cut(s) 372
BsuI GTATCC 2 cut(s) 817, 862
BsuRI GGCC 1 cut(s) 522
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 3 cut(s) 257, 314, 515
BtsIMutI CAGTG 2 cut(s) 105, 706
CaiI CAGNNNCTG 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 115, 521, 582
ClaI ATCGAT 1 cut(s) 372
CsiI ACCWGGT 1 cut(s) 801
CviAII CATG 1 cut(s) 60
DdeI CTNAG 1 cut(s) 447
DpnI GATC 4 cut(s) 126, 393, 518, 740
DpnII GATC 4 cut(s) 124, 391, 516, 738
Eco130I CCWWGG 1 cut(s) 810
Eco47I GGWCC 2 cut(s) 115, 582
Eco57I CTGAAG 1 cut(s) 884
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 1 cut(s) 63
FalI AAGNNNNNCTT 3 cut(s) 402, 434, 884
FaqI GGGAC 2 cut(s) 128, 595
FatI CATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 7, 327, 456
FokI GGATG 3 cut(s) 244, 301, 522
Fsp4HI GCNGC 3 cut(s) 7, 327, 456
FspBI CTAG 4 cut(s) 65, 560, 650, 672
GluI GCNGC 3 cut(s) 7, 327, 456
HaeIII GGCC 1 cut(s) 522
HapII CCGG 1 cut(s) 506
Hin1II CATG 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 377
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 5 cut(s) 391, 543, 567, 715, 864
Hpy188III TCNNGA 2 cut(s) 113, 761
Hpy8I GTNNAC 1 cut(s) 677
HpyAV CCTTC 4 cut(s) 200, 233, 859, 880
HpyCH4III ACNGT 5 cut(s) 97, 109, 553, 710, 874
HpyCH4IV ACGT 2 cut(s) 440, 679
HpyCH4V TGCA 4 cut(s) 82, 470, 641, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 70, 79, 452
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 440, 679
Hsp92II CATG 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 124, 391, 516, 738
LmnI GCTCC 2 cut(s) 38, 161
Lsp1109I GCAGC 2 cut(s) 338, 442
LweI GCATC 3 cut(s) 50, 65, 266
MabI ACCWGGT 1 cut(s) 801
MaeI CTAG 4 cut(s) 65, 560, 650, 672
MaeII ACGT 2 cut(s) 440, 679
MaeIII GTNAC 1 cut(s) 31
MalI GATC 4 cut(s) 126, 393, 518, 740
MboI GATC 4 cut(s) 124, 391, 516, 738
MboII GAAGA 5 cut(s) 215, 733, 749, 785, 892
MflI RGATCY 2 cut(s) 391, 738
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 335, 483
MmeI TCCRAC 1 cut(s) 673
MnlI CCTC 6 cut(s) 80, 328, 360, 442, 534, 709
MroXI GAANNNNTTC 4 cut(s) 174, 561, 591, 899
MseI TTAA 3 cut(s) 333, 339, 548
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 2 cut(s) 507, 803
MvaI CCWGG 1 cut(s) 803
MwoI GCNNNNNNNGC 4 cut(s) 15, 70, 79, 452
NciI CCSGG 1 cut(s) 507
NdeII GATC 4 cut(s) 124, 391, 516, 738
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 3 cut(s) 116, 117, 583
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 4 cut(s) 174, 561, 591, 899
PfeI GAWTC 1 cut(s) 377
PflFI GACNNNGTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 829
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 3 cut(s) 8, 328, 457
PpuMI RGGWCCY 1 cut(s) 115
PsiI TTATAA 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 3 cut(s) 116, 117, 583
PspPI GGNCC 3 cut(s) 115, 521, 582
PspPPI RGGWCCY 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 391, 738
PsyI GACNNNGTC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 333, 339, 548
SatI GCNGC 3 cut(s) 7, 327, 456
Sau3AI GATC 4 cut(s) 124, 391, 516, 738
Sau96I GGNCC 3 cut(s) 115, 521, 582
ScrFI CCNGG 2 cut(s) 507, 803
SduI GDGCHC 1 cut(s) 144
SexAI ACCWGGT 1 cut(s) 801
SfaNI GCATC 3 cut(s) 50, 65, 266
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 2 cut(s) 115, 582
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 2 cut(s) 335, 483
SsiI CCGC 3 cut(s) 9, 287, 848
SspMI CTAG 4 cut(s) 65, 560, 650, 672
StyD4I CCNGG 2 cut(s) 505, 801
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 5 cut(s) 97, 109, 553, 710, 874
TaiI ACGT 2 cut(s) 443, 682
TaqI TCGA 1 cut(s) 372
TaqII GACCGA 1 cut(s) 599
TasI AATT 2 cut(s) 335, 483
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 3 cut(s) 333, 339, 548
Tru9I TTAA 3 cut(s) 333, 339, 548
TscAI CASTG 2 cut(s) 112, 713
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 6, 326, 455
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 40, 167, 239, 390
TspRI CASTG 2 cut(s) 112, 713
Tth111I GACNNNGTC 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 115, 582
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 4 cut(s) 174, 561, 591, 899
XspI CTAG 4 cut(s) 65, 560, 650, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.