Prupe.2G021600_v2.0.a1

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000539
Physical Location & Seq
Reverse (-)
2108847 .. 2113377
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G021600.2

Sequence Viewer

Length: 981 bp
ATGAGTGGAGCAGAGAAGGTGGTGAGTGTAACCGGAGCGTCCGGTTACATAGCTTCGTGGGTGGTGAAGCTGTTGCTGCAACGGGGGTATACCGTCAAAGCCTCGGTTCGTGACCCAAATGATAAGAAGAAAACAGAACACTTACTTGCACTGGATGGAGCTAAGGAAAGGCTTCAGTTGTTCAAAGCAGACCTACTGGAAGAGGGATCTTTCAATTCCGTAGTTGAGGGTAGTGAAGGTGTTTTTCATACAGCATCCCCATTTTATCATGATGTCAGTGATCCGCAGGCAGAACTAATTGACCCTGCTCTGAAGGGAACGCTTAATGTCCTTAGATCGTGTGCTAAGGTGCCATCTATCAAAAGGGTGGTTATAACATCCTCTATGGCAGCAGTTGCGTTTAATGGAAAACCTCTTGCTCCTGATGTGATAATCGATGAATCTTGGTTTTCAGATCTAGCTGTTTGTGAAAAGTTAAAGCTTTGGTATATGATTTCAAAGACCTTAGCTGAGGATGCTGCTTGGAAGTTCACAAAAGAGAACAGAATTGATATGGTTGCGATAAATCCCGGATTGGTGATTGGTCCTCTCTTGCAGCCAACTCTGAATACAAGTGTGGAGCCTGTTCTAAAGCTCATAAATGGTGCTGAAACATTTCCAAATATAACTTACAGATGGGTTGATGTTAGAGATGTTGCCAATGCTCATATTCTAGCCTTTGAGAATGCTTCAGCTAGTGGGAGATATTGTTTAGTTGGAAGAATAGCACACTGTTCAGAGGTCGTGAAGCTTTTGCGTGGTCTCTTCCCTGCTCTCAAGATTCCAGAAAAATGTGCAGATGACAAACCTTTCACACCAATTTACCAAGTTTCCAAGGAAAGAGCCCAAGCCTTGGGTGTTAAGTTTACGCCTCTGGAGTTTGGAATGGAGGGAATCATTTCAACCAGAGATGTCATGTGTATAGTTTCGGTATTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

327

Amino Acids

35.74

Weight (kDa)

6.96

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 349
AccB7I CCANNNNNTGG 1 cut(s) 892
AccI GTMKAC 1 cut(s) 89
AciI CCGC 1 cut(s) 284
AclWI GGATC 2 cut(s) 214, 275
AcuI CTGAAG 3 cut(s) 158, 332, 714
AfaI GTAC 1 cut(s) 977
AfiI CCNNNNNNNGG 1 cut(s) 892
AgsI TTSAA 4 cut(s) 184, 214, 498, 942
AluBI AGCT 9 cut(s) 53, 70, 161, 461, 481, 509, 634, 734, 790
AluI AGCT 9 cut(s) 53, 70, 161, 461, 481, 509, 634, 734, 790
Alw26I GTCTC 1 cut(s) 806
AlwI GGATC 2 cut(s) 214, 275
ApeKI GCWGC 4 cut(s) 76, 389, 518, 595
Asp700I GAANNNNTTC 3 cut(s) 171, 654, 937
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 34, 76, 589
AvaII GGWCC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 886
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 4 cut(s) 63, 401, 505, 607
BccI CCATC 3 cut(s) 149, 361, 669
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 3 cut(s) 458, 713, 735
BglII AGATCT 1 cut(s) 454
BisI GCNGC 4 cut(s) 77, 390, 519, 596
BlsI GCNGC 4 cut(s) 78, 391, 520, 597
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 351, 621
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 263, 505
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 4 cut(s) 162, 345, 505, 510
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 3 cut(s) 102, 873, 891
BsaWI WCCGGW 2 cut(s) 32, 41
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 892
Bse1I ACTGG 2 cut(s) 156, 201
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 102, 873, 891
BseGI GGATG 4 cut(s) 160, 254, 377, 520
BseLI CCNNNNNNNGG 1 cut(s) 892
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 2 cut(s) 156, 201
BseXI GCAGC 4 cut(s) 63, 401, 505, 607
BsgI GTGCAG 1 cut(s) 855
BshNI GGYRCC 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 435
BsiSI CCGG 3 cut(s) 33, 42, 570
BslI CCNNNNNNNGG 1 cut(s) 892
BsmAI GTCTC 1 cut(s) 806
BsmI GAATGC 1 cut(s) 730
Bso31I GGTCTC 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 886
Bsp143I GATC 4 cut(s) 206, 280, 335, 454
BspACI CCGC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 502
BspDI ATCGAT 1 cut(s) 435
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 351, 621
BspPI GGATC 2 cut(s) 214, 275
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 806
BsrI ACTGG 2 cut(s) 156, 201
BssECI CCNNGG 3 cut(s) 102, 873, 891
BssMI GATC 4 cut(s) 206, 280, 335, 454
BssNAI GTATAC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 873, 891
Bst1107I GTATAC 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 94, 773
Bst6I CTCTTC 2 cut(s) 195, 809
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 5 cut(s) 162, 332, 345, 505, 510
BstF5I GGATG 4 cut(s) 160, 254, 377, 520
BstKTI GATC 4 cut(s) 209, 283, 338, 457
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 4 cut(s) 206, 280, 335, 454
BstMWI GCNNNNNNNGC 3 cut(s) 76, 395, 515
BstSCI CCNGG 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 63, 401, 505, 607
BstX2I RGATCY 2 cut(s) 206, 454
BstYI RGATCY 2 cut(s) 206, 454
BstZ17I GTATAC 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 435
BsuTUI ATCGAT 1 cut(s) 435
BtsCI GGATG 4 cut(s) 160, 254, 377, 520
BtsIMutI CAGTG 3 cut(s) 149, 283, 769
Cac8I GCNNGC 1 cut(s) 288
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 435
CseI GACGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 976
CviAII CATG 2 cut(s) 269, 955
CviQI GTAC 1 cut(s) 976
DdeI CTNAG 5 cut(s) 162, 332, 345, 505, 510
DpnI GATC 4 cut(s) 208, 282, 337, 456
DpnII GATC 4 cut(s) 206, 280, 335, 454
Eam1104I CTCTTC 2 cut(s) 195, 809
EarI CTCTTC 2 cut(s) 195, 809
Eco130I CCWWGG 2 cut(s) 873, 891
Eco24I GRGCYC 1 cut(s) 886
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 3 cut(s) 158, 332, 714
EcoT14I CCWWGG 2 cut(s) 873, 891
EcoT38I GRGCYC 1 cut(s) 886
ErhI CCWWGG 2 cut(s) 873, 891
FaeI CATG 2 cut(s) 272, 958
FatI CATG 2 cut(s) 268, 954
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 77, 390, 519, 596
FokI GGATG 4 cut(s) 167, 241, 364, 527
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 4 cut(s) 77, 390, 519, 596
FspBI CTAG 3 cut(s) 458, 713, 735
GluI GCNGC 4 cut(s) 77, 390, 519, 596
GsuI CTGGAG 1 cut(s) 935
HapII CCGG 3 cut(s) 33, 42, 570
HgaI GACGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 272, 958
HindIII AAGCTT 2 cut(s) 479, 788
HinfI GANTC 3 cut(s) 440, 820, 933
HpaII CCGG 3 cut(s) 33, 42, 570
HphI GGTGA 3 cut(s) 34, 76, 589
Hpy166II GTNNAC 3 cut(s) 90, 531, 906
Hpy188I TCNGA 4 cut(s) 312, 454, 606, 778
Hpy188III TCNNGA 7 cut(s) 110, 269, 422, 784, 817, 824, 914
Hpy8I GTNNAC 3 cut(s) 90, 531, 906
HpyAV CCTTC 3 cut(s) 10, 230, 307
HpyCH4III ACNGT 2 cut(s) 94, 773
HpyCH4V TGCA 4 cut(s) 79, 149, 595, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 395, 515
HpyF3I CTNAG 5 cut(s) 162, 332, 345, 505, 510
Hsp92II CATG 2 cut(s) 272, 958
Kzo9I GATC 4 cut(s) 206, 280, 335, 454
LmnI GCTCC 5 cut(s) 8, 35, 158, 424, 619
Lsp1109I GCAGC 4 cut(s) 63, 401, 505, 607
LweI GCATC 2 cut(s) 263, 505
MaeI CTAG 3 cut(s) 458, 713, 735
MaeIII GTNAC 3 cut(s) 28, 44, 110
MalI GATC 4 cut(s) 208, 282, 337, 456
MboI GATC 4 cut(s) 206, 280, 335, 454
MboII GAAGA 4 cut(s) 139, 212, 771, 796
MflI RGATCY 2 cut(s) 206, 454
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 4 cut(s) 214, 297, 546, 858
MmeI TCCRAC 1 cut(s) 736
MroXI GAANNNNTTC 3 cut(s) 171, 654, 937
MseI TTAA 4 cut(s) 324, 402, 476, 900
MspI CCGG 3 cut(s) 33, 42, 570
MspR9I CCNGG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 730
MwoI GCNNNNNNNGC 3 cut(s) 76, 395, 515
NciI CCSGG 1 cut(s) 570
NdeII GATC 4 cut(s) 206, 280, 335, 454
NlaIII CATG 2 cut(s) 272, 958
NlaIV GGNNCC 2 cut(s) 351, 621
NmuCI GTSAC 1 cut(s) 110
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 3 cut(s) 171, 654, 937
PfeI GAWTC 3 cut(s) 440, 820, 933
PflMI CCANNNNNTGG 1 cut(s) 892
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 4 cut(s) 78, 391, 520, 597
PsiI TTATAA 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 351, 621
PspPI GGNCC 1 cut(s) 584
PsuI RGATCY 2 cut(s) 206, 454
RsaI GTAC 1 cut(s) 977
RsaNI GTAC 1 cut(s) 976
SaqAI TTAA 4 cut(s) 324, 402, 476, 900
SatI GCNGC 4 cut(s) 77, 390, 519, 596
Sau3AI GATC 4 cut(s) 206, 280, 335, 454
Sau96I GGNCC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 2 cut(s) 263, 505
SinI GGWCC 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 4 cut(s) 214, 297, 546, 858
SsiI CCGC 1 cut(s) 284
SspMI CTAG 3 cut(s) 458, 713, 735
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 873, 891
TaaI ACNGT 2 cut(s) 94, 773
TaqI TCGA 1 cut(s) 435
TasI AATT 4 cut(s) 214, 297, 546, 858
TatI WGTACW 1 cut(s) 975
TfiI GAWTC 3 cut(s) 440, 820, 933
Tru1I TTAA 4 cut(s) 324, 402, 476, 900
Tru9I TTAA 4 cut(s) 324, 402, 476, 900
TscAI CASTG 3 cut(s) 156, 283, 776
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 76, 389, 518, 595
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 236, 453
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 3 cut(s) 156, 283, 776
Van91I CCANNNNNTGG 1 cut(s) 892
VpaK11BI GGWCC 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 89
XmnI GAANNNNTTC 3 cut(s) 171, 654, 937
XspI CTAG 3 cut(s) 458, 713, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.