Rw1G002040

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000539
Physical Location & Seq
Reverse (-)
3656042 .. 3665567
9526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002040.1

Sequence Viewer

Length: 888 bp
ATGAGCTGCGGAGAAAGCAAGGTTGTGTGTGTGACAGGAGCATCTGGACTCATAGCATCATGGCTGGTGAAGCTTTTATTGCAAAGAGGTTTTACTGTCAAAGCCACTGTTCGTGACCCAAATGATCAAAAGAAAACAGATCACCTACTCTCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAAGGTTCTTTTGATTCTGTAATTGATGGATGCGAATGTGTTTTCCATGTGGCATCCCCTGTAATACTTTCAGACCTCACTGACCCCCAGGCAGAATTACTTGACCCTGCGTTGAAGGGAACACTTAATGTCCTTGGATCCTGTGTGAAGGTTCCGTCTACCAAAAGGGTGGTTATAACATCCTCCATGGCAGCACTTTGGTATATGCTTTCAAAGACATTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAAGAGAAAGGAATTGATATAATTACAATAAATCCCGGATTGGCGATCGGCCCTCTCTTACAGCCAACTCTCAACACAAGTGTGCAGCCAATTCTAAAACTCGTAGATGGGACTGAAGAATTTACTAACACAACTTACATCCTCATTGATGTTAGAGATGTTGCCAATGCACATATTCTGGCCTTTGAGAACCCATCAGCTAGTGGACGTTATTGTTTGGTTGAAAGCGTAAAACACTGTTCAGAGGTTGTGAAAATGTTGAGCGATATCTCCCCTGCTCTTAATCTTCCAGATAAATGTGCAGATGACAAACCTTTCACACCAACTTACCAAGTATCCAATGAAAGAGCCCAAACTTTGGGTGTAAAGTATACTCCACTTGAATTGTCTCTGAAGGATACTGTTGAAAGTTTGAAGGACAAGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

295

Amino Acids

32.14

Weight (kDa)

5.34

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 106 1.5e-09 NmrA-like family
Epimerase PF01370 9 - 131 1.3e-11 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 136 1.1e-11 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 11 - 130 3.9e-10 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 13 - 134 2e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 811
AccI GTMKAC 2 cut(s) 362, 824
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 336, 349
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 2 cut(s) 588, 866
AfiI CCNNNNNNNGG 1 cut(s) 811
AgsI TTSAA 7 cut(s) 187, 319, 417, 677, 836, 860, 868
AjnI CCWGG 1 cut(s) 291
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 5 cut(s) 6, 73, 428, 437, 653
AluI AGCT 5 cut(s) 6, 73, 428, 437, 653
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 2 cut(s) 336, 349
AoxI GGCC 2 cut(s) 502, 633
ApeKI GCWGC 4 cut(s) 6, 395, 437, 538
ApoI RAATTY 1 cut(s) 572
Asp700I GAANNNNTTC 2 cut(s) 174, 881
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 2 cut(s) 79, 134
BamHI GGATCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 407, 424, 550
BccI CCATC 4 cut(s) 152, 224, 554, 655
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 2 cut(s) 799, 844
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 846
BfaI CTAG 1 cut(s) 654
BfuI GTATCC 2 cut(s) 799, 844
BisI GCNGC 4 cut(s) 7, 396, 438, 539
BlsI GCNGC 4 cut(s) 8, 397, 439, 540
Bme1390I CCNGG 2 cut(s) 293, 489
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 2 cut(s) 343, 357
BmrFI CCNGG 2 cut(s) 293, 489
BmsI GCATC 4 cut(s) 50, 65, 224, 266
Bpu10I CCTNAGC 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 291, 337, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 811
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 291, 337, 390
BseGI GGATG 4 cut(s) 239, 257, 383, 591
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMII CTCAG 1 cut(s) 420
BseXI GCAGC 3 cut(s) 407, 424, 550
BsgI GTGCAG 2 cut(s) 557, 774
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 504, 635
BsiEI CGRYCG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 577
BsnI GGCC 2 cut(s) 504, 635
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 4 cut(s) 124, 139, 341, 498
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 504, 635
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 343, 357
BspPI GGATC 2 cut(s) 336, 349
BssECI CCNNGG 3 cut(s) 291, 337, 390
BssMI GATC 4 cut(s) 124, 139, 341, 498
BssNAI GTATAC 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 337, 390
Bst1107I GTATAC 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 4 cut(s) 97, 109, 692, 856
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 4 cut(s) 239, 257, 383, 591
BstKTI GATC 4 cut(s) 127, 142, 344, 501
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 4 cut(s) 124, 139, 341, 498
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 4 cut(s) 15, 70, 79, 434
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 291, 487
BstV1I GCAGC 3 cut(s) 407, 424, 550
BstX2I RGATCY 1 cut(s) 341
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 1 cut(s) 341
BstZ17I GTATAC 1 cut(s) 825
BsuI GTATCC 2 cut(s) 799, 844
BsuRI GGCC 2 cut(s) 504, 635
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 4 cut(s) 239, 257, 383, 591
BtsIMutI CAGTG 3 cut(s) 105, 282, 688
Cfr13I GGNCC 1 cut(s) 503
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 3 cut(s) 60, 251, 391
DdeI CTNAG 1 cut(s) 429
DpnI GATC 4 cut(s) 126, 141, 343, 500
DpnII GATC 4 cut(s) 124, 139, 341, 498
Eco130I CCWWGG 2 cut(s) 337, 390
Eco24I GRGCYC 1 cut(s) 805
Eco32I GATATC 1 cut(s) 721
Eco57I CTGAAG 2 cut(s) 588, 866
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 2 cut(s) 337, 390
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 337, 390
FaeI CATG 3 cut(s) 63, 254, 394
FalI AAGNNNNNCTT 1 cut(s) 866
FaqI GGGAC 1 cut(s) 577
FatI CATG 3 cut(s) 59, 250, 390
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 2 cut(s) 362, 824
Fnu4HI GCNGC 4 cut(s) 7, 396, 438, 539
FokI GGATG 4 cut(s) 244, 246, 370, 578
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 4 cut(s) 7, 396, 438, 539
FspBI CTAG 1 cut(s) 654
GluI GCNGC 4 cut(s) 7, 396, 438, 539
HaeIII GGCC 2 cut(s) 504, 635
HapII CCGG 1 cut(s) 489
Hin1II CATG 3 cut(s) 63, 254, 394
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 48, 218
HpaII CCGG 1 cut(s) 489
HphI GGTGA 2 cut(s) 79, 134
Hpy166II GTNNAC 3 cut(s) 363, 659, 825
Hpy188I TCNGA 3 cut(s) 277, 697, 846
Hpy188III TCNNGA 3 cut(s) 45, 113, 743
Hpy8I GTNNAC 3 cut(s) 363, 659, 825
HpyAV CCTTC 5 cut(s) 200, 313, 346, 841, 862
HpyCH4III ACNGT 4 cut(s) 97, 109, 692, 856
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 5 cut(s) 82, 452, 538, 623, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 70, 79, 434
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 3 cut(s) 63, 254, 394
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 124, 139, 341, 498
LmnI GCTCC 2 cut(s) 38, 161
Lsp1109I GCAGC 3 cut(s) 407, 424, 550
LweI GCATC 4 cut(s) 50, 65, 224, 266
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 2 cut(s) 31, 113
MalI GATC 4 cut(s) 126, 141, 343, 500
MboI GATC 4 cut(s) 124, 139, 341, 498
MboII GAAGA 4 cut(s) 215, 581, 731, 874
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 7 cut(s) 225, 299, 465, 474, 543, 572, 836
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 7 cut(s) 80, 290, 397, 424, 516, 605, 691
MroXI GAANNNNTTC 2 cut(s) 174, 881
MseI TTAA 2 cut(s) 330, 735
MslI CAYNNNNRTG 1 cut(s) 533
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 293, 489
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 15, 70, 79, 434
NciI CCSGG 1 cut(s) 489
NcoI CCATGG 1 cut(s) 390
NdeII GATC 4 cut(s) 124, 139, 341, 498
NlaIII CATG 3 cut(s) 63, 254, 394
NlaIV GGNNCC 2 cut(s) 343, 357
NmuCI GTSAC 2 cut(s) 31, 113
OliI CACNNNNGTG 1 cut(s) 533
PdmI GAANNNNTTC 2 cut(s) 174, 881
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 4 cut(s) 8, 397, 439, 540
Ple19I CGATCG 1 cut(s) 501
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PsiI TTATAA 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 343, 357
PspPI GGNCC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 341
PvuI CGATCG 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 2 cut(s) 330, 735
SatI GCNGC 4 cut(s) 7, 396, 438, 539
Sau3AI GATC 4 cut(s) 124, 139, 341, 498
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 2 cut(s) 293, 489
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 4 cut(s) 50, 65, 224, 266
SmiMI CAYNNNNRTG 1 cut(s) 533
Sse9I AATT 7 cut(s) 225, 299, 465, 474, 543, 572, 836
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 291, 487
StyI CCWWGG 2 cut(s) 337, 390
TaaI ACNGT 4 cut(s) 97, 109, 692, 856
TaiI ACGT 1 cut(s) 664
TasI AATT 7 cut(s) 225, 299, 465, 474, 543, 572, 836
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 330, 735
Tru9I TTAA 2 cut(s) 330, 735
TscAI CASTG 3 cut(s) 112, 289, 695
TseFI GTSAC 2 cut(s) 31, 113
TseI GCWGC 4 cut(s) 6, 395, 437, 538
Tsp45I GTSAC 2 cut(s) 31, 113
TspDTI ATGAA 2 cut(s) 167, 810
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 3 cut(s) 112, 289, 695
Van91I CCANNNNNTGG 1 cut(s) 811
XapI RAATTY 1 cut(s) 572
XmiI GTMKAC 2 cut(s) 362, 824
XmnI GAANNNNTTC 2 cut(s) 174, 881
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.