pycom11g16630

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000539
Physical Location & Seq
Reverse (-)
18343367 .. 18346086
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16630.3

Sequence Viewer

Length: 591 bp
ATGGCTGCTGTAGCATATAATGGAAAGCCTCGAACTCCTGATGTAGTAGTTGATGAGACTTGGTTTACAGATCCCGATGTTTGTAAGGAATCAAAGCTTTGGTACGTGCTTTCAAAGACTTTGGCTGAAGATGCTGCATGGAAATTTGTAAAGGAGAAGGGTATTGACTTGGTTACAATTAACCCCGCAATGGTGATAGGTCCTCTGTTACAGCCAACTCTTAATACAAGTGCTGCAGCAATTTTAAATGTTATTAAGGGAGCTCGAACATTTCCAAATGCAAGTTTTGGATGGATTAATGTTAAAGATGTTGCCAATGCACATATTCAAGCATTTGAGAGGCCTACCGCTAGTGGCAGATATTGTTTGGTTGAGAGAGTTGCCCACTTCTCAGAAGTTGTGAGAGTTTTACGTGAGCTGTACCCTACTTTGCAACTTCCAGAGAAGTGTGCAGACGACAAGCCTTTTGTGCCAACATATCAGGTGTCCAAGGAGAAGGCGAAGAGCTTGGGTGTCGAATTTATTCCACTAGATGTCAGCCTCAAGGAAACAGTTGAAAGTCTGAAGGAAAAGGGTTTTGTCAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

197

Amino Acids

21.81

Weight (kDa)

6.74

Isoelectric Point (pI)

20.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 186, 348
AclWI GGATC 1 cut(s) 65
AcsI RAATTY 2 cut(s) 143, 518
AcuI CTGAAG 2 cut(s) 147, 584
AfaI GTAC 2 cut(s) 104, 422
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 3 cut(s) 114, 329, 557
AluBI AGCT 4 cut(s) 97, 263, 418, 507
AluI AGCT 4 cut(s) 97, 263, 418, 507
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 65
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 4 cut(s) 5, 134, 233, 236
ApoI RAATTY 2 cut(s) 143, 518
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 3 cut(s) 121, 220, 248
BccI CCATC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 2 cut(s) 351, 530
BfmI CTRYAG 2 cut(s) 9, 234
BisI GCNGC 4 cut(s) 6, 135, 234, 237
BlsI GCNGC 4 cut(s) 7, 136, 235, 238
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 527
BsaAI YACGTR 2 cut(s) 106, 413
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 405
BseXI GCAGC 3 cut(s) 121, 220, 248
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 186, 348
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 404
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 497
BstBAI YACGTR 2 cut(s) 106, 413
BstDEI CTNAG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 11, 131, 469
BstSFI CTRYAG 2 cut(s) 9, 234
BstV1I GCAGC 3 cut(s) 121, 220, 248
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 103, 421
CviAII CATG 1 cut(s) 138
CviQI GTAC 2 cut(s) 103, 421
DdeI CTNAG 1 cut(s) 391
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraI TTTAAA 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 147, 584
EcoICRI GAGCTC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 1 cut(s) 141
FaiI YATR 5 cut(s) 16, 18, 139, 324, 478
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 6, 135, 234, 237
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 4 cut(s) 6, 135, 234, 237
FspBI CTAG 2 cut(s) 351, 530
GluI GCNGC 4 cut(s) 6, 135, 234, 237
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 394, 564, 590
Hpy188III TCNNGA 3 cut(s) 38, 74, 440
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 151, 490, 559
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 105, 412
HpyCH4V TGCA 6 cut(s) 137, 236, 281, 320, 433, 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 131, 469
HpyF3I CTNAG 1 cut(s) 391
HpySE526I ACGT 2 cut(s) 105, 412
Hsp92II CATG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 3 cut(s) 51, 453, 467
Lsp1109I GCAGC 3 cut(s) 121, 220, 248
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 351, 530
MaeII ACGT 2 cut(s) 105, 412
MaeIII GTNAC 2 cut(s) 172, 207
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 140, 514
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 5 cut(s) 143, 177, 240, 518, 583
MnlI CCTC 4 cut(s) 39, 213, 333, 551
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 6 cut(s) 180, 222, 245, 255, 297, 303
MwoI GCNNNNNNNGC 3 cut(s) 11, 131, 469
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 141
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 4 cut(s) 7, 136, 235, 238
Ppu21I YACGTR 2 cut(s) 106, 413
PpuMI RGGWCCY 1 cut(s) 200
PshBI ATTAAT 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 200
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 104, 422
RsaNI GTAC 2 cut(s) 103, 421
SacI GAGCTC 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 6 cut(s) 180, 222, 245, 255, 297, 303
SatI GCNGC 4 cut(s) 6, 135, 234, 237
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 265
SetI ASST 8 cut(s) 99, 108, 202, 265, 415, 420, 486, 509
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 9, 234
SinI GGWCC 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 5 cut(s) 143, 177, 240, 518, 583
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 2 cut(s) 186, 348
SspMI CTAG 2 cut(s) 351, 530
SstI GAGCTC 1 cut(s) 265
StuI AGGCCT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 108, 415
TaqI TCGA 3 cut(s) 31, 265, 516
TasI AATT 5 cut(s) 143, 177, 240, 518, 583
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 6 cut(s) 180, 222, 245, 255, 297, 303
Tru9I TTAA 6 cut(s) 180, 222, 245, 255, 297, 303
TseI GCWGC 4 cut(s) 5, 134, 233, 236
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 2 cut(s) 143, 518
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 2 cut(s) 351, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.