Rorug01G0016000

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000539
Physical Location & Seq
Forward (+)
2813049 .. 2814845
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0016000.1

Sequence Viewer

Length: 690 bp
ATGCTCCATTTAGCTGCAAGATTAGCTCCCAAAAGCCAATTAAATAAATGGTCTGGAGCAGCTTTGCGAATGCAGCACGAATTAAAATGGTTCGAGGACGTGAAAAGGATTTTGCCGCCTTCATACATAGACATGAAAAATTCAGACGACCAAACAGCTCAAGAAGTATTCTCTTCTGCACATGCAGAGTTATTAAAAGAGGCAGAAAAATGGATGAATGACGCAGCAAAATCATGTATGGTCGTGTCAAGTCTTCTTGTCAGTGCTTTGTTTACGACGGGAATTACTGTGGCGCTAGGAAGGAATAACAGTACTGATCATCATTTGAAAAGGGTCTCGTATCAATTTTTCATCATATCAGATGCAGTGGCACTCTTCATGGGCTTGATTGCAACACTAATGTTCTTCTACATTCTCACCTCACGTTACGCGGAAAAAGATTTTCTAGAAGACTTGCCCTCAAAGTTGCTCACGGGACTCATATTTCTCTTCATTTCCATCATAGCCATGATGGCGACATTCAGCATGGTGTTCTTCATTGCTTACGGTGTCAAGAACGCGCTCCCTTATCTTGTTCTCCTCTTTGCAGTCGTGGCATTGGTCGTCTTTTTTATCCTGCTGCTTCCGTTTGGTCAGGAGATACGTGCTTCCACCACTCCCACGTCTTTATTTGAACCAAGTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

229

Amino Acids

25.76

Weight (kDa)

7.02

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 69 - 179 1.3e-14 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 431, 560
AciI CCGC 2 cut(s) 116, 431
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 2 cut(s) 328, 674
AjiI CACGTC 2 cut(s) 100, 663
AluBI AGCT 4 cut(s) 14, 26, 62, 158
AluI AGCT 4 cut(s) 14, 26, 62, 158
Alw26I GTCTC 1 cut(s) 340
ApeKI GCWGC 5 cut(s) 14, 59, 73, 224, 619
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 2 cut(s) 295, 562
AsuHPI GGTGA 1 cut(s) 409
BbsI GAAGAC 2 cut(s) 245, 456
BbvI GCAGC 4 cut(s) 71, 85, 236, 606
BccI CCATC 2 cut(s) 505, 506
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 2 cut(s) 296, 446
BfoI RGCGCY 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 512
BisI GCNGC 6 cut(s) 15, 60, 74, 116, 225, 620
BlsI GCNGC 6 cut(s) 16, 61, 75, 117, 226, 621
BmcAI AGTACT 1 cut(s) 313
BmgBI CACGTC 2 cut(s) 100, 663
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 2 cut(s) 245, 456
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 644
BsaI GGTCTC 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 537
BseGI GGATG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 537
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 4 cut(s) 71, 85, 236, 606
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 2 cut(s) 431, 560
BslFI GGGAC 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 2 cut(s) 116, 431
BspFNI CGCG 2 cut(s) 431, 560
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 537
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 289, 311, 548
Bst6I CTCTTC 3 cut(s) 178, 380, 494
BstBAI YACGTR 1 cut(s) 644
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 2 cut(s) 431, 560
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 295, 562
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 4 cut(s) 23, 73, 512, 593
BstNSI RCATGY 1 cut(s) 185
BstUI CGCG 2 cut(s) 431, 560
BstV1I GCAGC 4 cut(s) 71, 85, 236, 606
BstV2I GAAGAC 2 cut(s) 245, 456
BtrI CACGTC 2 cut(s) 100, 663
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 268, 372
CfoI GCGC 2 cut(s) 295, 562
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 312
CviAII CATG 6 cut(s) 133, 182, 234, 379, 508, 526
CviJI RGCY 7 cut(s) 14, 26, 36, 62, 158, 384, 506
CviKI_1 RGCY 7 cut(s) 14, 26, 36, 62, 158, 384, 506
CviQI GTAC 1 cut(s) 312
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 3 cut(s) 178, 380, 494
EarI CTCTTC 3 cut(s) 178, 380, 494
Eco31I GGTCTC 1 cut(s) 340
FaeI CATG 6 cut(s) 136, 185, 237, 382, 511, 529
FaqI GGGAC 1 cut(s) 489
FatI CATG 6 cut(s) 132, 181, 233, 378, 507, 525
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 6 cut(s) 15, 60, 74, 116, 225, 620
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 6 cut(s) 15, 60, 74, 116, 225, 620
FspBI CTAG 2 cut(s) 296, 446
GlaI GCGC 2 cut(s) 294, 561
GluI GCNGC 6 cut(s) 15, 60, 74, 116, 225, 620
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 296
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 295, 562
Hin1II CATG 6 cut(s) 136, 185, 237, 382, 511, 529
Hin6I GCGC 2 cut(s) 293, 560
HinP1I GCGC 2 cut(s) 293, 560
HinfI GANTC 1 cut(s) 477
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 145, 361
Hpy188III TCNNGA 5 cut(s) 54, 161, 446, 553, 635
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 129, 294
HpyCH4III ACNGT 3 cut(s) 289, 311, 548
HpyCH4IV ACGT 4 cut(s) 99, 424, 643, 662
HpyCH4V TGCA 7 cut(s) 17, 73, 179, 185, 365, 392, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 73, 512, 593
HpySE526I ACGT 4 cut(s) 99, 424, 643, 662
Hsp92II CATG 6 cut(s) 136, 185, 237, 382, 511, 529
HspAI GCGC 2 cut(s) 293, 560
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 4 cut(s) 9, 31, 56, 567
LpnPI CCDG 3 cut(s) 39, 620, 629
Lsp1109I GCAGC 4 cut(s) 71, 85, 236, 606
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 296, 446
MaeII ACGT 4 cut(s) 99, 424, 643, 662
MaeIII GTNAC 2 cut(s) 425, 680
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 7 cut(s) 165, 245, 367, 397, 461, 481, 526
MluCI AATT 6 cut(s) 38, 80, 139, 282, 344, 685
MlyI GAGTC 1 cut(s) 471
MnlI CCTC 5 cut(s) 88, 193, 430, 469, 590
MseI TTAA 4 cut(s) 41, 83, 194, 688
MslI CAYNNNNRTG 2 cut(s) 131, 506
Mva1269I GAATGC 1 cut(s) 75
MvnI CGCG 2 cut(s) 431, 560
MwoI GCNNNNNNNGC 4 cut(s) 23, 73, 512, 593
NdeII GATC 1 cut(s) 316
NlaIII CATG 6 cut(s) 136, 185, 237, 382, 511, 529
NmuCI GTSAC 1 cut(s) 680
NspI RCATGY 1 cut(s) 185
PctI GAATGC 1 cut(s) 75
PkrI GCNGC 6 cut(s) 16, 61, 75, 117, 226, 621
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
Ppu21I YACGTR 1 cut(s) 644
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 2 cut(s) 131, 506
SaqAI TTAA 4 cut(s) 41, 83, 194, 688
SatI GCNGC 6 cut(s) 15, 60, 74, 116, 225, 620
Sau3AI GATC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 313
SchI GAGTC 1 cut(s) 471
SetI ASST 9 cut(s) 16, 28, 64, 102, 160, 422, 427, 646, 665
SfaNI GCATC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 131, 506
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 6 cut(s) 38, 80, 139, 282, 344, 685
SsiI CCGC 2 cut(s) 116, 431
SspMI CTAG 2 cut(s) 296, 446
TaaI ACNGT 3 cut(s) 289, 311, 548
TaiI ACGT 4 cut(s) 102, 427, 646, 665
TaqI TCGA 1 cut(s) 93
TasI AATT 6 cut(s) 38, 80, 139, 282, 344, 685
TatI WGTACW 1 cut(s) 311
TauI GCSGC 1 cut(s) 118
Tru1I TTAA 4 cut(s) 41, 83, 194, 688
Tru9I TTAA 4 cut(s) 41, 83, 194, 688
TscAI CASTG 2 cut(s) 268, 372
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 5 cut(s) 14, 59, 73, 224, 619
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 7 cut(s) 111, 149, 230, 340, 367, 481, 526
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 2 cut(s) 268, 372
XapI RAATTY 1 cut(s) 139
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 185
XspI CTAG 2 cut(s) 296, 446
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.