FvH4_7g01564

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000539
Physical Location & Seq
Reverse (-)
1971152 .. 1973041
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01564.t1

Sequence Viewer

Length: 972 bp
ATGAGTTGTGGAGAAAGCAAGGTGGTGTGTGTGACAGGAGCATCAGGGTTCATAGCATCATGGCTGGTCAAGCTCTTACTGCAACGAGGGTATACTGTCAAAGCCACCGTTCGGGATCCAAATGATCAAAAGAAAACAGAACACCTGCTCTCACTTGAAGGAGCAAAGGAAAGGCTTCATCTATTCAAAGCTGACTTGTTAGATGAAGGTTCTTTTGATTCTGTAGTAGATGGTTGTGAATGTGTTTTCCATACGGCATCCTCTGTACTTCTTTCAGTCACTGACCCTCAGGCAGAATTATTGGACCCTGCTTTGAAGGGAACGCTTAATGTCCTTGAATCGTGTGTGAAGGTTCCCTCTGTTAAAAGGGTGGTTATAACATCCTCTATTGCAACAGTTGCATTTAACGGAAAACCTGAAACTTCTGATGTAACCATTGATGAAACTTGGTTTTCGGATCCTGCTTTTTGCGAAAAATCAAAGCTTTGGTATGTGCTTTCAAAGATACTAGCTGAGCAAGCTGCTTGGGAGTTTGCAAAAGAGAAAGGCATTGATATTGTTACAATAAATCCGGCATGGGTGATTGGCCCTCTCTTACAGCCAACTCTAAACTTAAGTGCGGAACAAGTTCTAAATCTCGTAAATGGGAAGGAACAGTTTCCTAACAAAAATTACAGATTTGTTGATGTTAGAGATGTTGCTAATGCACACATTCTAGCCTTTGAGAACCCCTCAGCTTGGGGACGTTATTGTTTAGTTGGAAGCACTAACCACTGTTCAGAGATTGTGAAGATGTTGAGCAGTATCTTCCCCACTCTCACTCTTCCAGATAAATGTGCAGATGACGAGCCTTTTCCACCAACATGCCAGGTATCAAAGGAAAGAGCCCAATCTTTGGGTGTAAAGTATACACTGCTAGAAGTGACACTGAAGGATACTGTTGAAAGTTTGATGGCCAAGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

324

Amino Acids

35.55

Weight (kDa)

5.28

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 87 1.9e-09 NmrA-like family
Epimerase PF01370 9 - 246 6.5e-27 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 242 1.5e-21 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 11 - 262 5.6e-16 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 11 - 200 2.4e-14 Male sterility protein
NAD_binding_10 PF13460 13 - 133 3.6e-11 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AarI CACCTGC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 895
AccI GTMKAC 2 cut(s) 92, 908
AciI CCGC 1 cut(s) 620
AclWI GGATC 4 cut(s) 110, 123, 452, 465
AcoI YGGCCR 1 cut(s) 954
AcuI CTGAAG 1 cut(s) 950
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 111, 738, 895
AflII CTTAAG 1 cut(s) 613
AgsI TTSAA 6 cut(s) 158, 187, 316, 338, 501, 944
AjnI CCWGG 1 cut(s) 867
AjuI GAANNNNNNNTTGG 1 cut(s) 950
AluBI AGCT 6 cut(s) 73, 191, 484, 512, 521, 737
AluI AGCT 6 cut(s) 73, 191, 484, 512, 521, 737
AlwI GGATC 4 cut(s) 110, 123, 452, 465
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 2 cut(s) 586, 954
ApeKI GCWGC 1 cut(s) 521
Asp700I GAANNNNTTC 4 cut(s) 174, 627, 657, 965
AspS9I GGNCC 2 cut(s) 304, 587
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 288
BalI TGGCCA 1 cut(s) 956
BamHI GGATCC 2 cut(s) 115, 457
BanII GRGCYC 1 cut(s) 889
BbvCI CCTCAGC 1 cut(s) 733
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 224, 946
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 869
BciVI GTATCC 1 cut(s) 928
BclI TGATCA 1 cut(s) 124
BfaI CTAG 3 cut(s) 509, 716, 917
BfmI CTRYAG 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 1 cut(s) 522
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 869
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 304, 587
BmiI GGNNCC 4 cut(s) 117, 306, 354, 459
BmrFI CCNGG 1 cut(s) 869
BmsI GCATC 3 cut(s) 50, 65, 266
BplI GAGNNNNNCTC 2 cut(s) 716, 748
Bpu10I CCTNAGC 1 cut(s) 733
Bpu1102I GCTNAGC 1 cut(s) 513
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 738, 895
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 869
BseGI GGATG 2 cut(s) 257, 380
BseLI CCNNNNNNNGG 3 cut(s) 111, 738, 895
BseMII CTCAG 3 cut(s) 302, 504, 747
BseXI GCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 858
BshFI GGCC 2 cut(s) 588, 956
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 3 cut(s) 111, 738, 895
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 2 cut(s) 588, 956
Bsp1286I GDGCHC 1 cut(s) 889
Bsp143I GATC 3 cut(s) 115, 124, 457
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 1 cut(s) 620
BspANI GGCC 2 cut(s) 588, 956
BspCNI CTCAG 3 cut(s) 301, 505, 746
BspLI GGNNCC 4 cut(s) 117, 306, 354, 459
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 4 cut(s) 110, 123, 452, 465
BspTI CTTAAG 1 cut(s) 613
BssMI GATC 3 cut(s) 115, 124, 457
BssNAI GTATAC 2 cut(s) 93, 909
Bst1107I GTATAC 2 cut(s) 93, 909
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 6 cut(s) 97, 109, 397, 657, 776, 940
Bst6I CTCTTC 1 cut(s) 828
BstAFI CTTAAG 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 288, 513, 733
BstF5I GGATG 2 cut(s) 257, 380
BstKTI GATC 3 cut(s) 118, 127, 460
BstMBI GATC 3 cut(s) 115, 124, 457
BstMWI GCNNNNNNNGC 4 cut(s) 70, 79, 398, 518
BstNI CCWGG 1 cut(s) 869
BstNSI RCATGY 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 867
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 508
BstX2I RGATCY 2 cut(s) 115, 457
BstYI RGATCY 2 cut(s) 115, 457
BstZ17I GTATAC 2 cut(s) 93, 909
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 2 cut(s) 588, 956
BtsCI GGATG 2 cut(s) 257, 380
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 4 cut(s) 279, 772, 911, 926
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 304, 587
Csp6I GTAC 1 cut(s) 266
CviAII CATG 3 cut(s) 60, 576, 864
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 3 cut(s) 288, 513, 733
DpnI GATC 3 cut(s) 117, 126, 459
DpnII GATC 3 cut(s) 115, 124, 457
EaeI YGGCCR 1 cut(s) 954
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco24I GRGCYC 1 cut(s) 889
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 950
Eco81I CCTNAGG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 889
FaeI CATG 3 cut(s) 63, 579, 867
FaiI YATR 9 cut(s) 53, 61, 93, 252, 377, 492, 577, 865, 909
FalI AAGNNNNNCTT 1 cut(s) 950
FaqI GGGAC 1 cut(s) 756
FatI CATG 3 cut(s) 59, 575, 863
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 2 cut(s) 92, 908
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 244, 367
FriOI GRGCYC 1 cut(s) 889
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 3 cut(s) 509, 716, 917
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 2 cut(s) 588, 956
HapII CCGG 1 cut(s) 572
Hin1II CATG 3 cut(s) 63, 579, 867
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 2 cut(s) 218, 338
HpaII CCGG 1 cut(s) 572
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 93, 909
Hpy188I TCNGA 3 cut(s) 427, 457, 781
Hpy188III TCNNGA 2 cut(s) 113, 827
Hpy8I GTNNAC 2 cut(s) 93, 909
HpyAV CCTTC 6 cut(s) 152, 200, 310, 343, 643, 925
HpyCH4III ACNGT 6 cut(s) 97, 109, 397, 657, 776, 940
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 6 cut(s) 82, 392, 401, 536, 707, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 79, 398, 518
HpyF3I CTNAG 3 cut(s) 288, 513, 733
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 3 cut(s) 63, 579, 867
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 115, 124, 457
LmnI GCTCC 2 cut(s) 38, 161
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 3 cut(s) 50, 65, 266
MaeI CTAG 3 cut(s) 509, 716, 917
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 5 cut(s) 31, 277, 430, 559, 922
MalI GATC 3 cut(s) 117, 126, 459
MboI GATC 3 cut(s) 115, 124, 457
MboII GAAGA 4 cut(s) 799, 802, 815, 958
MflI RGATCY 2 cut(s) 115, 457
MhlI GDGCHC 1 cut(s) 889
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 2 cut(s) 296, 670
MluNI TGGCCA 1 cut(s) 956
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 7 cut(s) 80, 271, 297, 367, 394, 600, 742
Mox20I TGGCCA 1 cut(s) 956
MroXI GAANNNNTTC 4 cut(s) 174, 627, 657, 965
MscI TGGCCA 1 cut(s) 956
MseI TTAA 4 cut(s) 327, 363, 405, 614
MslI CAYNNNNRTG 1 cut(s) 862
Msp20I TGGCCA 1 cut(s) 956
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 869
MvaI CCWGG 1 cut(s) 869
MwoI GCNNNNNNNGC 4 cut(s) 70, 79, 398, 518
NdeII GATC 3 cut(s) 115, 124, 457
NlaIII CATG 3 cut(s) 63, 579, 867
NlaIV GGNNCC 4 cut(s) 117, 306, 354, 459
NmuCI GTSAC 3 cut(s) 31, 277, 922
NspI RCATGY 1 cut(s) 867
PaqCI CACCTGC 1 cut(s) 153
PdmI GAANNNNTTC 4 cut(s) 174, 627, 657, 965
PfeI GAWTC 2 cut(s) 218, 338
PflMI CCANNNNNTGG 1 cut(s) 895
PkrI GCNGC 1 cut(s) 523
PsiI TTATAA 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 867
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 4 cut(s) 117, 306, 354, 459
PspPI GGNCC 2 cut(s) 304, 587
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 2 cut(s) 115, 457
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 862
SaqAI TTAA 4 cut(s) 327, 363, 405, 614
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 3 cut(s) 115, 124, 457
Sau96I GGNCC 2 cut(s) 304, 587
ScrFI CCNGG 1 cut(s) 869
SduI GDGCHC 1 cut(s) 889
SfaNI GCATC 3 cut(s) 50, 65, 266
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 862
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 2 cut(s) 296, 670
SsiI CCGC 1 cut(s) 620
SspMI CTAG 3 cut(s) 509, 716, 917
StyD4I CCNGG 1 cut(s) 867
TaaI ACNGT 6 cut(s) 97, 109, 397, 657, 776, 940
TaiI ACGT 1 cut(s) 748
TasI AATT 2 cut(s) 296, 670
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 2 cut(s) 218, 338
Tru1I TTAA 4 cut(s) 327, 363, 405, 614
Tru9I TTAA 4 cut(s) 327, 363, 405, 614
TscAI CASTG 4 cut(s) 286, 779, 918, 933
TseFI GTSAC 3 cut(s) 31, 277, 922
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 3 cut(s) 31, 277, 922
TspDTI ATGAA 4 cut(s) 40, 167, 219, 456
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 4 cut(s) 286, 779, 918, 933
Van91I CCANNNNNTGG 1 cut(s) 895
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 867
XmiI GTMKAC 2 cut(s) 92, 908
XmnI GAANNNNTTC 4 cut(s) 174, 627, 657, 965
XspI CTAG 3 cut(s) 509, 716, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.