RLG00000034802

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000539
Physical Location & Seq
Forward (+)
54797602 .. 54804706
7105 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034802

Sequence Viewer

Length: 846 bp
ATGAGCAACAAGGTGGTCTGCGTCACGGGTGCCTCCGGCTACATTGCTTCATGGCTCGTCAAGCTCCTTCTCCAACGCGGCTACACTGTCAAGGCCTCTGTTCGCAACCCAAATGATCCAACAAAGACGGAGCACTTGCTCGCACTTGATGGAGCTAAGGAGAGACTTCAACTTTTCAAAGCAGATCTATTAGAAGAAGGTTCTTTTGACTCTGCTGTTGAGGGCTGTGAGGGTGTTTTCCACACTGCATCTCCCTTTTATCATGACGTCACAGACCCAAAGCCTCGAACTCCTGATGTAGTGGTTGATGAGACTTGGTTTACTGATCCAGATGTCTGTAAGGAATCAAAGCTATGGTATGTGCTTTCAAAGACTTTGGCGGAGGATGCTGCCTGGAAACTTGTAAAGGAGAAGGGAATTGACATGGTTACAATTAATCCTGCAATGGTGATTGGTCCTCTGTTACAGCCAACGCTAAATACAAGTGCTGCTGCAATTCTGAATATTATTAAGGGAGCTCGAACATATCCAAATGCAAGTTTTGGATGGATTAATGTCAAAGATGTTGCCAATGCACATGTTCAAGCGTTTGAGATTCCTTCAGCTAGTGGAAGATATTGTTTAGTCGAGAGAGTTGCTCACTTTAGTGAAGTTCTGCAGATTATACATGAGCTGTACCCTGAATTGCAACTTCCAGACAAATGTTCGGATGATAAACCTTTTGTGCCAACATATCAGGTGTCCAAAGAAAAGGCAAAGAGCTTGGGTATTGAGTTTATTCCATTAGACATTAGCCTCAAGGAAACAATTGAAAGCTTGAAGGAAAAGAGTTTTGTCAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

282

Amino Acids

31.17

Weight (kDa)

5.46

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 3 - 86 5.2e-10 NmrA-like family
Epimerase PF01370 6 - 84 4.2e-08 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 8 - 81 2.3e-07 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 10 - 85 9.4e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 78, 380
AclWI GGATC 2 cut(s) 110, 320
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 6 cut(s) 170, 178, 369, 584, 812, 820
AjnI CCWGG 1 cut(s) 392
AleI CACNNNNGTG 1 cut(s) 645
AluBI AGCT 9 cut(s) 64, 155, 352, 518, 605, 673, 762, 816, 840
AluI AGCT 9 cut(s) 64, 155, 352, 518, 605, 673, 762, 816, 840
Alw21I GWGCWC 2 cut(s) 135, 520
Alw26I GTCTC 2 cut(s) 157, 305
AlwI GGATC 2 cut(s) 110, 320
AlwNI CAGNNNCTG 1 cut(s) 843
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 389, 488, 491
AseI ATTAAT 2 cut(s) 435, 552
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 460
AvaII GGWCC 1 cut(s) 455
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 520
Bbv12I GWGCWC 2 cut(s) 135, 520
BbvI GCAGC 3 cut(s) 376, 475, 478
BccI CCATC 2 cut(s) 143, 540
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 157, 305
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 656
BglII AGATCT 1 cut(s) 184
BisI GCNGC 4 cut(s) 79, 390, 489, 492
BlsI GCNGC 4 cut(s) 80, 391, 490, 493
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 2 cut(s) 257, 376
BplI GAGNNNNNCTC 2 cut(s) 622, 654
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse3DI GCAATG 2 cut(s) 42, 450
BseBI CCWGG 1 cut(s) 394
BseGI GGATG 3 cut(s) 391, 551, 715
BseMI GCAATG 2 cut(s) 42, 450
BseXI GCAGC 3 cut(s) 376, 475, 478
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 135, 520
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 157, 305
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 135, 520
Bsp143I GATC 3 cut(s) 115, 184, 325
BspACI CCGC 2 cut(s) 78, 380
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 2 cut(s) 110, 320
BspT107I GGYRCC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 42, 450
BssMI GATC 3 cut(s) 115, 184, 325
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 391, 551, 715
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 3 cut(s) 118, 187, 328
BstMAI GTCTC 2 cut(s) 157, 305
BstMBI GATC 3 cut(s) 115, 184, 325
BstMWI GCNNNNNNNGC 2 cut(s) 61, 386
BstNI CCWGG 1 cut(s) 394
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 656
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 376, 475, 478
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 391, 551, 715
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 84, 243
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 843
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 676
CviAII CATG 5 cut(s) 51, 263, 424, 578, 668
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 1 cut(s) 156
DpnI GATC 3 cut(s) 117, 186, 327
DpnII GATC 3 cut(s) 115, 184, 325
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 518
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 585
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 5 cut(s) 54, 266, 427, 581, 671
FatI CATG 5 cut(s) 50, 262, 423, 577, 667
Fnu4HI GCNGC 4 cut(s) 79, 390, 489, 492
FokI GGATG 3 cut(s) 398, 558, 722
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 4 cut(s) 79, 390, 489, 492
FspBI CTAG 1 cut(s) 606
GluI GCNGC 4 cut(s) 79, 390, 489, 492
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 54, 266, 427, 581, 671
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 3 cut(s) 209, 344, 595
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 501, 709, 845
Hpy188III TCNNGA 5 cut(s) 263, 293, 329, 628, 695
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 5 cut(s) 77, 191, 406, 609, 814
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 7 cut(s) 248, 443, 494, 536, 575, 658, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 386
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 54, 266, 427, 581, 671
Kzo9I GATC 3 cut(s) 115, 184, 325
LmnI GCTCC 4 cut(s) 69, 130, 152, 515
LpnPI CCDG 9 cut(s) 49, 306, 342, 379, 406, 453, 693, 708, 722
Lsp1109I GCAGC 3 cut(s) 376, 475, 478
LweI GCATC 2 cut(s) 257, 376
MaeI CTAG 1 cut(s) 606
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 4 cut(s) 22, 268, 427, 462
MalI GATC 3 cut(s) 117, 186, 327
MboI GATC 3 cut(s) 115, 184, 325
MboII GAAGA 2 cut(s) 206, 624
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 135, 520
MluCI AATT 5 cut(s) 417, 432, 495, 683, 807
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 97, 143
MnlI CCTC 8 cut(s) 43, 106, 214, 223, 294, 376, 468, 806
MseI TTAA 3 cut(s) 435, 510, 552
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 61, 386
NdeII GATC 3 cut(s) 115, 184, 325
NlaIII CATG 5 cut(s) 54, 266, 427, 581, 671
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 22, 268
NspI RCATGY 1 cut(s) 581
OliI CACNNNNGTG 1 cut(s) 645
PagI TCATGA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 95
PciI ACATGT 1 cut(s) 577
PfeI GAWTC 2 cut(s) 344, 595
PkrI GCNGC 4 cut(s) 80, 391, 490, 493
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PscI ACATGT 1 cut(s) 577
PshBI ATTAAT 2 cut(s) 435, 552
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 1 cut(s) 843
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 3 cut(s) 435, 510, 552
SatI GCNGC 4 cut(s) 79, 390, 489, 492
Sau3AI GATC 3 cut(s) 115, 184, 325
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 2 cut(s) 135, 520
SfaNI GCATC 2 cut(s) 257, 376
SfcI CTRYAG 1 cut(s) 656
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
Sse9I AATT 5 cut(s) 417, 432, 495, 683, 807
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 2 cut(s) 78, 380
SspI AATATT 1 cut(s) 505
SspMI CTAG 1 cut(s) 606
SstI GAGCTC 1 cut(s) 520
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 286, 520, 627
TasI AATT 5 cut(s) 417, 432, 495, 683, 807
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 2 cut(s) 344, 595
Tru1I TTAA 3 cut(s) 435, 510, 552
Tru9I TTAA 3 cut(s) 435, 510, 552
TscAI CASTG 2 cut(s) 91, 250
TseFI GTSAC 2 cut(s) 22, 268
TseI GCWGC 3 cut(s) 389, 488, 491
Tsp45I GTSAC 2 cut(s) 22, 268
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 91, 250
VpaK11BI GGWCC 1 cut(s) 455
VspI ATTAAT 2 cut(s) 435, 552
XceI RCATGY 1 cut(s) 581
XspI CTAG 1 cut(s) 606
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.