Rorug01G0016700

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000539
Physical Location & Seq
Forward (+)
2882121 .. 2883636
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0016700.1

Sequence Viewer

Length: 672 bp
ATGGTAACTTGGACTGAGATTGCACGAACAGATGGTGATGGTGGTGGTGGCATTCATGAAATTAACTGTTCTTTTCACGAGCAAAATCTACACGCAGCTTCGGACTCTCAATTAGGGGCAGGATGTCAAGCAGGGGCAAGGTTTCGAATCTTAAAGGAAAGATTATTAAATGCCAAGACGAAACGCTGCAGCTATTGCAGGAGAAACAGATGTGGTCTGAATTGGACAGAAGCTGACCTGAGAAGACAAAAACTATGCAATTCGATCCAACCATCTAAATTTGAAAAGGAACTCGAGGATCTGAAGAAGGCCTTGAAGAATGAGGAGGAGAATGAATCCGTGATAAAAGAGATTTTTGACCGTAGGCAAGTTAGCTATGCTGAATATAAGAAATCTATGGATTTACAGCTGATAAAAATTGAGCGAAACTTAGTTGAGCTAGAGGAGATCGTGTCTGATGAGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTAAAAAATCTTGATGTCTTCTGTGCGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTATCTCCCTTCTCAAAGAAGCTAAGCTTGATCATCCTGTTGGACAGAATGGACAGAAAATGCGAAGAAGGCGAGTCTCGATAGGACCCTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

223

Amino Acids

25.57

Weight (kDa)

8.73

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 536
AclWI GGATC 2 cut(s) 259, 306
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 284, 316
AluBI AGCT 8 cut(s) 98, 192, 233, 375, 409, 439, 596, 601
AluI AGCT 8 cut(s) 98, 192, 233, 375, 409, 439, 596, 601
Alw26I GTCTC 2 cut(s) 502, 655
AlwI GGATC 2 cut(s) 259, 306
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 95, 186, 189
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 659
AsuHPI GGTGA 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 659
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 250, 520
BbvI GCAGC 3 cut(s) 107, 173, 201
BccI CCATC 4 cut(s) 26, 32, 280, 493
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 502, 655
BfaI CTAG 2 cut(s) 440, 570
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 4 cut(s) 96, 187, 190, 537
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 4 cut(s) 97, 188, 191, 538
Bme18I GGWCC 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 250, 520
Bpu1102I GCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
BseGI GGATG 2 cut(s) 128, 607
BseMII CTCAG 2 cut(s) 6, 230
BseRI GAGGAG 3 cut(s) 338, 341, 458
BseXI GCAGC 3 cut(s) 107, 173, 201
BshFI GGCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 502, 655
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 264, 298, 447, 604
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 1 cut(s) 536
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 7, 231
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 191
BspPI GGATC 2 cut(s) 259, 306
BspT104I TTCGAA 1 cut(s) 145
BssMI GATC 4 cut(s) 264, 298, 447, 604
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 68, 362, 480
Bst6I CTCTTC 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 145
BstDEI CTNAG 4 cut(s) 15, 239, 430, 597
BstF5I GGATG 2 cut(s) 128, 607
BstKTI GATC 4 cut(s) 267, 301, 450, 607
BstMAI GTCTC 2 cut(s) 502, 655
BstMBI GATC 4 cut(s) 264, 298, 447, 604
BstMWI GCNNNNNNNGC 3 cut(s) 195, 489, 643
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 107, 173, 201
BstV2I GAAGAC 2 cut(s) 250, 520
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 2 cut(s) 128, 607
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 659
CseI GACGC 1 cut(s) 498
CviAII CATG 1 cut(s) 56
DdeI CTNAG 4 cut(s) 15, 239, 430, 597
DpnI GATC 4 cut(s) 266, 300, 449, 606
DpnII GATC 4 cut(s) 264, 298, 447, 604
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
Eco147I AGGCCT 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 659
FaeI CATG 1 cut(s) 59
FaiI YATR 7 cut(s) 57, 256, 378, 387, 398, 494, 542
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 585, 617
FatI CATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 96, 187, 190, 537
FokI GGATG 2 cut(s) 135, 594
Fsp4HI GCNGC 4 cut(s) 96, 187, 190, 537
FspBI CTAG 2 cut(s) 440, 570
GluI GCNGC 4 cut(s) 96, 187, 190, 537
HaeIII GGCC 1 cut(s) 311
HgaI GACGC 1 cut(s) 498
Hin1II CATG 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 8 cut(s) 104, 147, 335, 461, 468, 557, 566, 648
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 103, 219, 303, 457
Hpy188III TCNNGA 6 cut(s) 56, 77, 465, 521, 554, 652
HpyAV CCTTC 4 cut(s) 301, 556, 593, 636
HpyCH4III ACNGT 3 cut(s) 68, 362, 480
HpyCH4V TGCA 5 cut(s) 23, 189, 198, 258, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 489, 643
HpyF3I CTNAG 4 cut(s) 15, 239, 430, 597
Hsp92II CATG 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 4 cut(s) 264, 298, 447, 604
LpnPI CCDG 6 cut(s) 105, 117, 184, 251, 450, 624
Lsp1109I GCAGC 3 cut(s) 107, 173, 201
MaeI CTAG 2 cut(s) 440, 570
MaeIII GTNAC 1 cut(s) 4
MalI GATC 4 cut(s) 266, 300, 449, 606
MboI GATC 4 cut(s) 264, 298, 447, 604
MboII GAAGA 6 cut(s) 255, 316, 328, 517, 520, 651
MflI RGATCY 1 cut(s) 298
MluCI AATT 6 cut(s) 60, 110, 220, 259, 278, 417
MlyI GAGTC 5 cut(s) 98, 470, 477, 575, 657
MmeI TCCRAC 2 cut(s) 292, 595
MnlI CCTC 4 cut(s) 289, 316, 319, 436
MseI TTAA 3 cut(s) 63, 152, 167
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 195, 489, 643
NdeII GATC 4 cut(s) 264, 298, 447, 604
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 661
NspV TTCGAA 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 311
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 147, 335, 557
PkrI GCNGC 4 cut(s) 97, 188, 191, 538
PleI GAGTC 5 cut(s) 98, 469, 476, 574, 656
PpsI GAGTC 5 cut(s) 98, 469, 476, 574, 656
PpuMI RGGWCCY 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 659
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 1 cut(s) 659
PspPPI RGGWCCY 1 cut(s) 659
PspXI VCTCGAGB 1 cut(s) 293
PstI CTGCAG 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 3 cut(s) 63, 152, 167
SatI GCNGC 4 cut(s) 96, 187, 190, 537
Sau3AI GATC 4 cut(s) 264, 298, 447, 604
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 5 cut(s) 98, 470, 477, 575, 657
SfcI CTRYAG 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 145
SinI GGWCC 1 cut(s) 659
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 6 cut(s) 60, 110, 220, 259, 278, 417
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 1 cut(s) 536
SspMI CTAG 2 cut(s) 440, 570
StuI AGGCCT 1 cut(s) 311
TaaI ACNGT 3 cut(s) 68, 362, 480
TaqI TCGA 6 cut(s) 145, 263, 294, 555, 560, 653
TasI AATT 6 cut(s) 60, 110, 220, 259, 278, 417
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 147, 335, 557
Tru1I TTAA 3 cut(s) 63, 152, 167
Tru9I TTAA 3 cut(s) 63, 152, 167
TseI GCWGC 3 cut(s) 95, 186, 189
TspDTI ATGAA 4 cut(s) 44, 72, 348, 489
TspGWI ACGGA 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 659
XapI RAATTY 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 2 cut(s) 440, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.