FvH4_7g05190

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000539
Physical Location & Seq
Forward (+)
5543442 .. 5544158
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05190.t1

Sequence Viewer

Length: 288 bp
ATGGCGACGTGCGGACGTAGAGAAATCGGAGTAGTTTTTGCAGAACTTAAGATCTATCTTTGGACTGAAAAATTTCCTAGCACAACTTGTGTATTTGTTGATGTTAGAGATGTTGCGATTGCGCATATTCTAGCTTTTGAGAACCCCTCAGCTAGTGGACATGACAAACCTTTCACACCAACTTACCAGGTATCCAAGGAAAGAGCCCAAACTCTGGGTGTAAAGCTTACTCCACTTGAAGTGTCTTTGAAGGATACTCTTGAAAGTTTGAAGAGCAAGAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

7.79

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 4 cut(s) 239, 250, 263, 271
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 3 cut(s) 134, 152, 226
AluI AGCT 3 cut(s) 134, 152, 226
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 2 cut(s) 202, 247
BfaI CTAG 3 cut(s) 78, 131, 153
BfrI CTTAAG 1 cut(s) 47
BfuI GTATCC 2 cut(s) 202, 247
BglII AGATCT 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu10I CCTNAGC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 266
BspTI CTTAAG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuI GTATCC 2 cut(s) 202, 247
BtrI CACGTC 1 cut(s) 9
CfoI GCGC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 186
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 134, 152, 206, 226
CviKI_1 RGCY 4 cut(s) 134, 152, 206, 226
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 164
FaiI YATR 2 cut(s) 126, 162
FatI CATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 208
FspBI CTAG 3 cut(s) 78, 131, 153
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 8, 16
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 148
HpySE526I ACGT 2 cut(s) 8, 16
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 1 cut(s) 51
LguI GCTCTTC 1 cut(s) 266
LpnPI CCDG 3 cut(s) 173, 200, 200
MabI ACCWGGT 1 cut(s) 186
MaeI CTAG 3 cut(s) 78, 131, 153
MaeII ACGT 2 cut(s) 8, 16
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 283
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 71
MnlI CCTC 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 164
NsbI TGCGCA 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 208
SetI ASST 7 cut(s) 11, 19, 136, 154, 172, 192, 228
SexAI ACCWGGT 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 71
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 78, 131, 153
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 2 cut(s) 11, 19
TasI AATT 1 cut(s) 71
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 47
XapI RAATTY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 3 cut(s) 78, 131, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.