Rmu_sc0001158.1_g000003

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001158.1
OG0000539
Physical Location & Seq
Reverse (-)
18216 .. 23590
5375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001158.1_g000003.1.cds

Sequence Viewer

Length: 1281 bp
atgagtggagcagcgaaggtggtggtgagcgtcaccggagcatccggttacattgcttcatggctggtcaaactgttgctgcaacgtggctacactgtcaaggcctctgttcgtgacccaaatgacaagaagaaaacagaacacttgcttgcattagatggagccaaggaaaggcttcaattgttcaaagcagacctacttgaagaaggatcttttgattccttagttgatggtagtgtagctgtttttcataccgcatccccattttatcacaatcccaatgacccacaggtagaactaattgaccctgccttgaagggaacgcttaatgtcctcagatcatgtgttaaggttccgtctatcaagagggtggttataacttcctctatggcagcagtcgcgttcaatgggatacctgtcgctcctgatgtaataattgatgaatcttggttttcagatccagctttctgtgaacaatcaaaggcttggtatatgctttcaaagacattagctgaggaagctgcttggaagtttgcaaaagagaaaggaattgatattgttacaataaatccgggattggtgattggccctctcttacagccaactctcaacacaagtgtggagccaatcctgaaactcataaatggtacttgggctgaaaaatttccaaacacaacttacagatttgttgatgttagagatgttgccaatgcacatattctagcctttgagaatccttcagctagtggacgctattgtttagttggaagtgtaacacactgttcagagattgtaaaaattctgcgtcatatcttccctgctctcagtcttccagaaaagcctgcagatgacaaacctttcacaccaacttaccaggtatccaaggaaagagcacaaactttgggtgtaaagtatactccgctagaagtgactctaaaggataataggcttctgcccgatgggttcacgaagtatattgttcgaggggctcaatgggtggttgttggtgcttggtgtaaccggatggctctggcatcgttttttggggcagcatctctgagcggcgttcatgcggaccaggatcggccgaccttagtgatagtggcttggaccaacgacggtgtggattctgaattgacgcggagtgggtcaggtgaagctgctgaggcttgtacaaacgacatggcgtgtgggagatgtgggcttggaccgagccaagctggatgggctctgagtggaactcttccctttgaggcttttgggcttagtaacttgggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

426

Amino Acids

46.03

Weight (kDa)

6.2

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 1062
AccI GTMKAC 1 cut(s) 914
AccII CGCG 2 cut(s) 401, 1141
AciI CCGC 5 cut(s) 255, 920, 1062, 1073, 1141
AclWI GGATC 3 cut(s) 217, 452, 1089
AcoI YGGCCR 1 cut(s) 1085
AcsI RAATTY 2 cut(s) 662, 798
AcuI CTGAAG 1 cut(s) 723
AfaI GTAC 2 cut(s) 649, 1174
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 6 cut(s) 179, 187, 203, 316, 406, 501
AjnI CCWGG 2 cut(s) 873, 1077
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 7 cut(s) 242, 464, 512, 521, 743, 1160, 1220
AluI AGCT 7 cut(s) 242, 464, 512, 521, 743, 1160, 1220
Alw21I GWGCWC 1 cut(s) 895
AlwI GGATC 3 cut(s) 217, 452, 1089
AoxI GGCC 3 cut(s) 102, 586, 1085
ApeKI GCWGC 6 cut(s) 11, 79, 392, 521, 1049, 1160
ApoI RAATTY 2 cut(s) 662, 798
Asp700I GAANNNNTTC 2 cut(s) 174, 663
AspS9I GGNCC 4 cut(s) 587, 1075, 1110, 1208
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 4 cut(s) 25, 37, 592, 1166
AvaII GGWCC 3 cut(s) 1075, 1110, 1208
BanII GRGCYC 2 cut(s) 991, 1231
BbsI GAAGAC 1 cut(s) 821
Bbv12I GWGCWC 1 cut(s) 895
BbvCI CCTCAGC 2 cut(s) 513, 1164
BbvI GCAGC 6 cut(s) 23, 66, 404, 508, 1061, 1147
BccI CCATC 5 cut(s) 152, 224, 953, 1018, 1218
BciT130I CCWGG 2 cut(s) 875, 1079
BciVI GTATCC 2 cut(s) 405, 889
BcnI CCSGG 1 cut(s) 573
BfaI CTAG 4 cut(s) 722, 744, 923, 1279
BfmI CTRYAG 1 cut(s) 843
BfuI GTATCC 2 cut(s) 405, 889
BisI GCNGC 7 cut(s) 12, 80, 393, 522, 1050, 1063, 1161
BlsI GCNGC 7 cut(s) 13, 81, 394, 523, 1051, 1064, 1162
Bme1390I CCNGG 3 cut(s) 573, 875, 1079
Bme18I GGWCC 3 cut(s) 1075, 1110, 1208
BmgT120I GGNCC 4 cut(s) 587, 1075, 1110, 1208
BmiI GGNNCC 3 cut(s) 163, 354, 624
BmrFI CCNGG 3 cut(s) 573, 875, 1079
BmsI GCATC 4 cut(s) 50, 266, 1043, 1061
BpiI GAAGAC 1 cut(s) 821
BplI GAGNNNNNCTC 2 cut(s) 1225, 1257
Bpu10I CCTNAGC 2 cut(s) 513, 1164
BpuMI CCSGG 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 165, 882
BsaWI WCCGGW 3 cut(s) 35, 44, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 2 cut(s) 875, 1079
BseDI CCNNGG 2 cut(s) 165, 882
BseGI GGATG 4 cut(s) 41, 257, 1029, 1229
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 6 cut(s) 349, 504, 838, 1049, 1155, 1223
BseX3I CGGCCG 1 cut(s) 1085
BseXI GCAGC 6 cut(s) 23, 66, 404, 508, 1061, 1147
Bsh1236I CGCG 2 cut(s) 401, 1141
Bsh1285I CGRYCG 1 cut(s) 1088
BshFI GGCC 3 cut(s) 104, 588, 1087
BsiEI CGRYCG 1 cut(s) 1088
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 4 cut(s) 36, 45, 572, 1021
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 3 cut(s) 104, 588, 1087
Bsp1286I GDGCHC 3 cut(s) 895, 991, 1231
Bsp1407I TGTACA 1 cut(s) 1172
Bsp143I GATC 4 cut(s) 209, 338, 457, 1081
BspACI CCGC 5 cut(s) 255, 920, 1062, 1073, 1141
BspANI GGCC 3 cut(s) 104, 588, 1087
BspCNI CTCAG 6 cut(s) 348, 505, 837, 1050, 1156, 1224
BspFNI CGCG 2 cut(s) 401, 1141
BspLI GGNNCC 3 cut(s) 163, 354, 624
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 3 cut(s) 217, 452, 1089
BsrBI CCGCTC 1 cut(s) 1062
BsrDI GCAATG 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 1172
BssECI CCNNGG 2 cut(s) 165, 882
BssMI GATC 4 cut(s) 209, 338, 457, 1081
BssNAI GTATAC 1 cut(s) 915
BssT1I CCWWGG 2 cut(s) 165, 882
Bst1107I GTATAC 1 cut(s) 915
Bst2UI CCWGG 2 cut(s) 875, 1079
Bst4CI ACNGT 4 cut(s) 75, 97, 782, 1121
Bst6I CTCTTC 1 cut(s) 1248
BstAUI TGTACA 1 cut(s) 1172
BstC8I GCNNGC 2 cut(s) 150, 843
BstDEI CTNAG 9 cut(s) 223, 335, 513, 824, 1058, 1093, 1164, 1232, 1265
BstF5I GGATG 4 cut(s) 41, 257, 1029, 1229
BstFNI CGCG 2 cut(s) 401, 1141
BstKTI GATC 4 cut(s) 212, 341, 460, 1084
BstMBI GATC 4 cut(s) 209, 338, 457, 1081
BstMCI CGRYCG 1 cut(s) 1088
BstMWI GCNNNNNNNGC 4 cut(s) 398, 518, 1166, 1226
BstNI CCWGG 2 cut(s) 875, 1079
BstSCI CCNGG 3 cut(s) 571, 873, 1077
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 2 cut(s) 401, 1141
BstV1I GCAGC 6 cut(s) 23, 66, 404, 508, 1061, 1147
BstV2I GAAGAC 1 cut(s) 821
BstX2I RGATCY 2 cut(s) 209, 457
BstYI RGATCY 2 cut(s) 209, 457
BstZ17I GTATAC 1 cut(s) 915
BstZI CGGCCG 1 cut(s) 1085
BsuI GTATCC 2 cut(s) 405, 889
BsuRI GGCC 3 cut(s) 104, 588, 1087
BtsCI GGATG 4 cut(s) 41, 257, 1029, 1229
BtsIMutI CAGTG 2 cut(s) 93, 778
Cac8I GCNNGC 2 cut(s) 150, 843
Cfr13I GGNCC 4 cut(s) 587, 1075, 1110, 1208
CseI GACGC 4 cut(s) 19, 759, 794, 1147
CsiI ACCWGGT 1 cut(s) 873
Csp6I GTAC 2 cut(s) 648, 1173
CviAII CATG 4 cut(s) 60, 342, 1070, 1183
CviQI GTAC 2 cut(s) 648, 1173
DdeI CTNAG 9 cut(s) 223, 335, 513, 824, 1058, 1093, 1164, 1232, 1265
DpnI GATC 4 cut(s) 211, 340, 459, 1083
DpnII GATC 4 cut(s) 209, 338, 457, 1081
EaeI YGGCCR 1 cut(s) 1085
EagI CGGCCG 1 cut(s) 1085
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
EclXI CGGCCG 1 cut(s) 1085
Eco130I CCWWGG 2 cut(s) 165, 882
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 2 cut(s) 991, 1231
Eco47I GGWCC 3 cut(s) 1075, 1110, 1208
Eco52I CGGCCG 1 cut(s) 1085
Eco57I CTGAAG 1 cut(s) 723
EcoRII CCWGG 2 cut(s) 873, 1077
EcoT14I CCWWGG 2 cut(s) 165, 882
EcoT38I GRGCYC 2 cut(s) 991, 1231
ErhI CCWWGG 2 cut(s) 165, 882
FaeI CATG 4 cut(s) 63, 345, 1073, 1186
FatI CATG 4 cut(s) 59, 341, 1069, 1182
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 7 cut(s) 12, 80, 393, 522, 1050, 1063, 1161
FokI GGATG 4 cut(s) 28, 244, 1036, 1236
FriOI GRGCYC 2 cut(s) 991, 1231
Fsp4HI GCNGC 7 cut(s) 12, 80, 393, 522, 1050, 1063, 1161
FspBI CTAG 4 cut(s) 722, 744, 923, 1279
GluI GCNGC 7 cut(s) 12, 80, 393, 522, 1050, 1063, 1161
HaeIII GGCC 3 cut(s) 104, 588, 1087
HapII CCGG 4 cut(s) 36, 45, 572, 1021
HgaI GACGC 4 cut(s) 19, 759, 794, 1147
Hin1II CATG 4 cut(s) 63, 345, 1073, 1186
HinfI GANTC 5 cut(s) 218, 443, 733, 931, 1127
HpaII CCGG 4 cut(s) 36, 45, 572, 1021
HphI GGTGA 4 cut(s) 25, 37, 592, 1166
Hpy166II GTNNAC 4 cut(s) 473, 749, 915, 966
Hpy188I TCNGA 6 cut(s) 338, 457, 787, 1059, 1132, 1233
Hpy188III TCNNGA 6 cut(s) 113, 364, 425, 631, 833, 967
Hpy8I GTNNAC 4 cut(s) 473, 749, 915, 966
Hpy99I CGWCG 1 cut(s) 1121
HpyAV CCTTC 4 cut(s) 10, 200, 310, 747
HpyCH4III ACNGT 4 cut(s) 75, 97, 782, 1121
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 5 cut(s) 82, 152, 536, 713, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 518, 1166, 1226
HpyF3I CTNAG 9 cut(s) 223, 335, 513, 824, 1058, 1093, 1164, 1232, 1265
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 4 cut(s) 63, 345, 1073, 1186
Kzo9I GATC 4 cut(s) 209, 338, 457, 1081
LmnI GCTCC 5 cut(s) 8, 38, 161, 427, 622
Lsp1109I GCAGC 6 cut(s) 23, 66, 404, 508, 1061, 1147
LweI GCATC 4 cut(s) 50, 266, 1043, 1061
MabI ACCWGGT 1 cut(s) 873
MaeI CTAG 4 cut(s) 722, 744, 923, 1279
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 8 cut(s) 31, 47, 113, 559, 772, 928, 1016, 1268
MalI GATC 4 cut(s) 211, 340, 459, 1083
MbiI CCGCTC 1 cut(s) 1062
MboI GATC 4 cut(s) 209, 338, 457, 1081
MboII GAAGA 5 cut(s) 142, 215, 805, 821, 1235
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 209, 457
MhlI GDGCHC 3 cut(s) 895, 991, 1231
MluCI AATT 7 cut(s) 179, 300, 435, 549, 662, 798, 1133
MlyI GAGTC 1 cut(s) 925
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 9 cut(s) 115, 344, 360, 394, 508, 600, 977, 1159, 1246
MroXI GAANNNNTTC 2 cut(s) 174, 663
MseI TTAA 2 cut(s) 327, 348
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 4 cut(s) 36, 45, 572, 1021
MspR9I CCNGG 3 cut(s) 573, 875, 1079
MunI CAATTG 1 cut(s) 179
MvaI CCWGG 2 cut(s) 875, 1079
MvnI CGCG 2 cut(s) 401, 1141
MwoI GCNNNNNNNGC 4 cut(s) 398, 518, 1166, 1226
NciI CCSGG 1 cut(s) 573
NdeII GATC 4 cut(s) 209, 338, 457, 1081
NlaIII CATG 4 cut(s) 63, 345, 1073, 1186
NlaIV GGNNCC 3 cut(s) 163, 354, 624
NmuCI GTSAC 3 cut(s) 31, 113, 928
OliI CACNNNNGTG 1 cut(s) 617
PceI AGGCCT 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 174, 663
PfeI GAWTC 4 cut(s) 218, 443, 733, 1127
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 7 cut(s) 13, 81, 394, 523, 1051, 1064, 1162
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PsiI TTATAA 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 873, 1077
PspGI CCWGG 2 cut(s) 873, 1077
PspN4I GGNNCC 3 cut(s) 163, 354, 624
PspPI GGNCC 4 cut(s) 587, 1075, 1110, 1208
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 2 cut(s) 209, 457
RsaI GTAC 2 cut(s) 649, 1174
RsaNI GTAC 2 cut(s) 648, 1173
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 2 cut(s) 327, 348
SatI GCNGC 7 cut(s) 12, 80, 393, 522, 1050, 1063, 1161
Sau3AI GATC 4 cut(s) 209, 338, 457, 1081
Sau96I GGNCC 4 cut(s) 587, 1075, 1110, 1208
SchI GAGTC 1 cut(s) 925
ScrFI CCNGG 3 cut(s) 573, 875, 1079
SduI GDGCHC 3 cut(s) 895, 991, 1231
SexAI ACCWGGT 1 cut(s) 873
SfaNI GCATC 4 cut(s) 50, 266, 1043, 1061
SfcI CTRYAG 1 cut(s) 843
SinI GGWCC 3 cut(s) 1075, 1110, 1208
SmiMI CAYNNNNRTG 1 cut(s) 617
Sse9I AATT 7 cut(s) 179, 300, 435, 549, 662, 798, 1133
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 5 cut(s) 255, 920, 1062, 1073, 1141
SspMI CTAG 4 cut(s) 722, 744, 923, 1279
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 571, 873, 1077
StyI CCWWGG 2 cut(s) 165, 882
TaaI ACNGT 4 cut(s) 75, 97, 782, 1121
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 982
TaqII GACCGA 1 cut(s) 1225
TasI AATT 7 cut(s) 179, 300, 435, 549, 662, 798, 1133
TatI WGTACW 1 cut(s) 1172
TauI GCSGC 1 cut(s) 1065
TfiI GAWTC 4 cut(s) 218, 443, 733, 1127
Tru1I TTAA 2 cut(s) 327, 348
Tru9I TTAA 2 cut(s) 327, 348
TscAI CASTG 2 cut(s) 100, 785
TseFI GTSAC 3 cut(s) 31, 113, 928
TseI GCWGC 6 cut(s) 11, 79, 392, 521, 1049, 1160
Tsp45I GTSAC 3 cut(s) 31, 113, 928
TspDTI ATGAA 4 cut(s) 48, 239, 456, 1058
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 100, 785
VpaK11BI GGWCC 3 cut(s) 1075, 1110, 1208
XapI RAATTY 2 cut(s) 662, 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XmiI GTMKAC 1 cut(s) 914
XmnI GAANNNNTTC 2 cut(s) 174, 663
XspI CTAG 4 cut(s) 722, 744, 923, 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.