Rorug05G0270400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000539
Physical Location & Seq
Forward (+)
30504713 .. 30505702
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0270400.1

Sequence Viewer

Length: 720 bp
ATGATTGAAGAGAAGGAAATGGTCATGGTTTCACCAACTGGTGGAGACCCATTTCGCAAAAATGCCTATTTTCTCAAACCCATTCTCCCTAATTCCTCCAATTATGAACCTTCTTTCAATCTCCCTCACTGTTTTTCCTCCCTCGCACCCCTTTTTGACCCAAAAAAGTTGAACCTTCAATTCCGTGGATGGCGTTACGACCACCAAGATTTGCAGAGTTGGTTTCTCCACCTGGCTTCTAAGCACCAATCTACATGGAAGAAAGCTGGTATCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAAGAAAAAGGATTTGGTTTGTGGGTTTGCAGAGAAATGGTGTTGTGAGACCAACACCTTCATCTTTCCATGGGGTGAAGCAACTATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCTATTTTGGGATACTCCATTTTAAGTCCTATTGAAAGCAGAGAACTGAAAGAAATAGAAGACAAACTTGAGGAAGAGCGAATTGGACTTTACAATCGCAAGGGTGGGGTTAGAGTTGCTTACACACAACTATGGATGAAGAAGTTCATGAAGAGTGGAAGTGAATTAGAGCACGAAGCATTCCTTGTGTTCTGGCTGTCCAGGTATGTTTTCGATATGTTAATGTCTAAAAGTTCAGCGGTAGCTGAACCTTTGTTAACGCTTATCCGGTGGGCGGATCAATACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

239

Amino Acids

27.85

Weight (kDa)

6.96

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 90 - 215 5.1e-43 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 2 cut(s) 668, 704
AclWI GGATC 1 cut(s) 714
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 41, 703
AgsI TTSAA 7 cut(s) 8, 118, 172, 179, 278, 289, 464
AjnI CCWGG 2 cut(s) 231, 629
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 495, 527
AluBI AGCT 2 cut(s) 266, 674
AluI AGCT 2 cut(s) 266, 674
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 2 cut(s) 39, 350
AlwI GGATC 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 24, 395
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 603
BccI CCATC 2 cut(s) 183, 290
BciT130I CCWGG 2 cut(s) 233, 631
BciVI GTATCC 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 39, 350
BfuI GTATCC 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 233, 631
BmrFI CCNGG 2 cut(s) 233, 631
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 39, 350
BsaJI CCNNGG 2 cut(s) 184, 377
BsaWI WCCGGW 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 703
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 233, 631
BseDI CCNNGG 2 cut(s) 184, 377
BseGI GGATG 3 cut(s) 194, 412, 570
BseLI CCNNNNNNNGG 2 cut(s) 41, 703
BseNI ACTGG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 697
BslI CCNNNNNNNGG 2 cut(s) 41, 703
BsmAI GTCTC 2 cut(s) 39, 350
BsmI GAATGC 1 cut(s) 608
Bso31I GGTCTC 2 cut(s) 39, 350
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 1 cut(s) 706
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 2 cut(s) 668, 704
BspHI TCATGA 1 cut(s) 576
BspPI GGATC 1 cut(s) 714
BspQI GCTCTTC 1 cut(s) 498
BspTNI GGTCTC 2 cut(s) 39, 350
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 184, 377
BssMI GATC 1 cut(s) 706
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 233, 631
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 3 cut(s) 3, 498, 575
BstBAI YACGTR 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 2 cut(s) 184, 377
BstF5I GGATG 3 cut(s) 194, 412, 570
BstKTI GATC 1 cut(s) 709
BstMAI GTCTC 2 cut(s) 39, 350
BstMBI GATC 1 cut(s) 706
BstNI CCWGG 2 cut(s) 233, 631
BstSCI CCNGG 2 cut(s) 231, 629
BstV2I GAAGAC 1 cut(s) 495
BsuI GTATCC 1 cut(s) 434
BtgI CCRYGG 2 cut(s) 184, 377
BtsCI GGATG 3 cut(s) 194, 412, 570
BtsIMutI CAGTG 1 cut(s) 127
CciI TCATGA 1 cut(s) 576
Csp6I GTAC 1 cut(s) 298
CviAII CATG 4 cut(s) 25, 255, 378, 577
CviJI RGCY 6 cut(s) 236, 266, 281, 426, 625, 674
CviKI_1 RGCY 6 cut(s) 236, 266, 281, 426, 625, 674
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 708
DpnII GATC 1 cut(s) 706
Eam1104I CTCTTC 3 cut(s) 3, 498, 575
EarI CTCTTC 3 cut(s) 3, 498, 575
EciI GGCGGA 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 2 cut(s) 39, 350
EcoRII CCWGG 2 cut(s) 231, 629
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 4 cut(s) 28, 258, 381, 580
FaiI YATR 9 cut(s) 26, 105, 256, 379, 413, 562, 578, 636, 647
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 597, 629
FatI CATG 4 cut(s) 24, 254, 377, 576
FokI GGATG 3 cut(s) 201, 419, 577
HapII CCGG 1 cut(s) 697
Hin1II CATG 4 cut(s) 28, 258, 381, 580
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HpaI GTTAAC 1 cut(s) 687
HpaII CCGG 1 cut(s) 697
HphI GGTGA 2 cut(s) 24, 395
Hpy166II GTNNAC 1 cut(s) 687
Hpy188III TCNNGA 1 cut(s) 577
Hpy8I GTNNAC 1 cut(s) 687
HpyAV CCTTC 4 cut(s) 7, 120, 185, 376
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 214, 338
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 4 cut(s) 28, 258, 381, 580
KspAI GTTAAC 1 cut(s) 687
Kzo9I GATC 1 cut(s) 706
LguI GCTCTTC 1 cut(s) 498
LpnPI CCDG 8 cut(s) 24, 218, 245, 252, 607, 616, 643, 710
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 708
MboI GATC 1 cut(s) 706
MboII GAAGA 7 cut(s) 20, 271, 277, 500, 515, 580, 592
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 6 cut(s) 91, 100, 179, 289, 510, 593
MnlI CCTC 7 cut(s) 106, 135, 148, 152, 397, 416, 493
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 3 cut(s) 452, 650, 686
MslI CAYNNNNRTG 1 cut(s) 559
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 233, 631
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 2 cut(s) 233, 631
NcoI CCATGG 1 cut(s) 377
NdeII GATC 1 cut(s) 706
NlaIII CATG 4 cut(s) 28, 258, 381, 580
PagI TCATGA 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 231, 629
PspGI CCWGG 2 cut(s) 231, 629
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 3 cut(s) 452, 650, 686
Sau3AI GATC 1 cut(s) 706
ScrFI CCNGG 2 cut(s) 233, 631
SduI GDGCHC 1 cut(s) 603
SetI ASST 9 cut(s) 112, 177, 234, 268, 299, 368, 635, 676, 682
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 6 cut(s) 91, 100, 179, 289, 510, 593
SsiI CCGC 2 cut(s) 668, 704
StyD4I CCNGG 2 cut(s) 231, 629
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 642
TasI AATT 6 cut(s) 91, 100, 179, 289, 510, 593
Tru1I TTAA 3 cut(s) 452, 650, 686
Tru9I TTAA 3 cut(s) 452, 650, 686
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 5 cut(s) 120, 358, 565, 581, 593
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.