Prupe.4G253700_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000539
Physical Location & Seq
Reverse (-)
17383980 .. 17390651
6672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G253700.2

Sequence Viewer

Length: 978 bp
ATGAGCAGCGGGGCTGGTAAGGTCGTCTGCGTCACCGGTGCGTCCGGTTACATTGCTTCGTGGCTCGTGAAGCTTCTTCTTCATGGCGGTTACACTGTCAAGGCCTCTGTTCGCGACCCAAATGATCCAACTAAGACAGAGCACCTGCTCGGGCTTGATGGAGCTCAAGAGAGACTTCAACTTTTCAAAGCAAATCTATTGGAGGAAGGTTCTTTTGACTCTGCTGTTGAGGGTTGTGAAGGGGTTTTCCATACTGCTTCTCCCTTTTATCATGATGTCACAGATCCAAAGGCAGAACTACTTGACCCTGCAGTAAAGGGAACCCTTAATGTTCTTAATTCGTGTGCGAAATCCCAGTCTATCAGACGGGTGGTCTTGACATCTTCTATAGCCGCAGTTGCATATAACGGAAAACCTCGAACTCCTGATGTAGTTGTTGATGAGACTTGGTTTACCGATGCAGATTTTTGTAAGGAATCAAAGCTATGGTATGTGCTTTCAAAGACTTTGGCTGAGGACGCTGCCTGGAAATTTGTAAAGGAGAAGGGTATTGACATGGTTACAATTAACCCTGCAATGGTGATTGGTCCTCTGTTACAGCCAACACTTAATACAAGTGCTGCAGCAGTTTTGAATGTTATTAAGGGAGCTCGAACATTTCCCAATGCAAGTTTTGGATGGATTAATGTTAAAGATGTTGCCAATGCACATATTCGAGCATTTGAGATTCCTTCAGCTAGTGGCAGATATTGTTTGGTTGAGAGAGTTGCACACTTCTCGGAAGTTGTGAGAATTTTACAAGAGCTGTACCCTGGTTTGCAACTTCCAGAGAAGTGTGCGGATGATAAGCCTTTTGTGCCAACATATCAGGTGTCCAAGGAGAAGGCAAAGAAGTTAGGTGTTGAATTCATTCCGTTAGAGGTTAGCCTCAAGGAAACAGTTGAAAGCCTGAAGGAAAAGAATTTTGTCAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

326

Amino Acids

35.52

Weight (kDa)

6.34

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 153
AccII CGCG 1 cut(s) 114
AciI CCGC 4 cut(s) 9, 87, 393, 839
AclWI GGATC 2 cut(s) 119, 278
AcsI RAATTY 4 cut(s) 530, 792, 905, 961
AcuI CTGAAG 2 cut(s) 717, 971
AfaI GTAC 1 cut(s) 809
AfiI CCNNNNNNNGG 1 cut(s) 577
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 6 cut(s) 179, 187, 501, 634, 905, 944
AhdI GACNNNNNGTC 1 cut(s) 371
AjnI CCWGG 2 cut(s) 524, 811
AluBI AGCT 6 cut(s) 73, 164, 484, 650, 737, 805
AluI AGCT 6 cut(s) 73, 164, 484, 650, 737, 805
Alw21I GWGCWC 3 cut(s) 144, 166, 652
Alw26I GTCTC 2 cut(s) 166, 437
AlwI GGATC 2 cut(s) 119, 278
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 4 cut(s) 6, 521, 620, 623
ApoI RAATTY 4 cut(s) 530, 792, 905, 961
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AseI ATTAAT 1 cut(s) 684
AsiGI ACCGGT 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 909
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 2 cut(s) 25, 592
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 587
BanII GRGCYC 2 cut(s) 166, 652
BauI CACGAG 1 cut(s) 65
Bbv12I GWGCWC 3 cut(s) 144, 166, 652
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 4 cut(s) 18, 508, 607, 635
BccI CCATC 2 cut(s) 152, 672
BcgI CGANNNNNNTGC 2 cut(s) 759, 793
BciT130I CCWGG 2 cut(s) 526, 813
BcoDI GTCTC 2 cut(s) 166, 437
BfaI CTAG 1 cut(s) 738
BfmI CTRYAG 3 cut(s) 309, 387, 621
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 5 cut(s) 7, 393, 522, 621, 624
BlsI GCNGC 5 cut(s) 8, 394, 523, 622, 625
Bme1390I CCNGG 2 cut(s) 526, 813
Bme18I GGWCC 1 cut(s) 587
BmeRI GACNNNNNGTC 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 2 cut(s) 526, 813
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 150, 914
BsaJI CCNNGG 2 cut(s) 811, 876
BsaWI WCCGGW 2 cut(s) 35, 44
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 577
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 2 cut(s) 51, 582
BseBI CCWGG 2 cut(s) 526, 813
BseDI CCNNGG 2 cut(s) 811, 876
BseGI GGATG 2 cut(s) 683, 847
BseLI CCNNNNNNNGG 1 cut(s) 577
BseMI GCAATG 2 cut(s) 51, 582
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 4 cut(s) 18, 508, 607, 635
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 104
BshTI ACCGGT 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 144, 166, 652
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 36, 45
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 2 cut(s) 166, 437
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 144, 166, 652
Bsp143I GATC 2 cut(s) 124, 283
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 4 cut(s) 9, 87, 393, 839
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 2 cut(s) 313, 625
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 119, 278
BsrDI GCAATG 2 cut(s) 51, 582
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 811, 876
BssMI GATC 2 cut(s) 124, 283
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 526, 813
Bst4CI ACNGT 2 cut(s) 97, 940
BstDEI CTNAG 2 cut(s) 132, 513
BstF5I GGATG 2 cut(s) 683, 847
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 2 cut(s) 127, 286
BstMAI GTCTC 2 cut(s) 166, 437
BstMBI GATC 2 cut(s) 124, 283
BstMWI GCNNNNNNNGC 4 cut(s) 70, 398, 518, 856
BstNI CCWGG 2 cut(s) 526, 813
BstSCI CCNGG 2 cut(s) 524, 811
BstSFI CTRYAG 3 cut(s) 309, 387, 621
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 4 cut(s) 18, 508, 607, 635
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 683, 847
BtsIMutI CAGTG 1 cut(s) 93
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 3 cut(s) 19, 30, 527
Csp6I GTAC 1 cut(s) 808
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 3 cut(s) 83, 272, 556
CviQI GTAC 1 cut(s) 808
DdeI CTNAG 2 cut(s) 132, 513
DpnI GATC 2 cut(s) 126, 285
DpnII GATC 2 cut(s) 124, 283
DriI GACNNNNNGTC 1 cut(s) 371
Eam1105I GACNNNNNGTC 1 cut(s) 371
Ecl136II GAGCTC 2 cut(s) 164, 650
Eco130I CCWWGG 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 2 cut(s) 166, 652
Eco47I GGWCC 1 cut(s) 587
Eco53kI GAGCTC 2 cut(s) 164, 650
Eco57I CTGAAG 2 cut(s) 717, 971
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 2 cut(s) 164, 650
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 2 cut(s) 524, 811
EcoT14I CCWWGG 1 cut(s) 876
EcoT38I GRGCYC 2 cut(s) 166, 652
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 3 cut(s) 86, 275, 559
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 3 cut(s) 82, 271, 555
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 5 cut(s) 7, 393, 522, 621, 624
FokI GGATG 2 cut(s) 690, 854
FriOI GRGCYC 2 cut(s) 166, 652
Fsp4HI GCNGC 5 cut(s) 7, 393, 522, 621, 624
FspBI CTAG 1 cut(s) 738
GluI GCNGC 5 cut(s) 7, 393, 522, 621, 624
HaeIII GGCC 1 cut(s) 104
HapII CCGG 2 cut(s) 36, 45
HgaI GACGC 3 cut(s) 19, 30, 527
Hin1II CATG 3 cut(s) 86, 275, 559
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 3 cut(s) 218, 476, 727
HpaII CCGG 2 cut(s) 36, 45
HphI GGTGA 2 cut(s) 25, 592
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 3 cut(s) 365, 781, 977
Hpy188III TCNNGA 7 cut(s) 67, 113, 167, 272, 376, 425, 827
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 6 cut(s) 200, 233, 538, 741, 877, 946
HpyCH4III ACNGT 2 cut(s) 97, 940
HpyCH4V TGCA 9 cut(s) 311, 401, 461, 575, 623, 668, 707, 770, 820
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 398, 518, 856
HpyF3I CTNAG 2 cut(s) 132, 513
Hsp92II CATG 3 cut(s) 86, 275, 559
Kzo9I GATC 2 cut(s) 124, 283
LmnI GCTCC 2 cut(s) 161, 647
Lsp1109I GCAGC 4 cut(s) 18, 508, 607, 635
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 738
MaeIII GTNAC 6 cut(s) 31, 47, 89, 277, 559, 594
MalI GATC 2 cut(s) 126, 285
MboI GATC 2 cut(s) 124, 283
MboII GAAGA 3 cut(s) 68, 71, 375
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 3 cut(s) 144, 166, 652
MluCI AATT 7 cut(s) 337, 530, 564, 792, 905, 961, 970
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 8 cut(s) 115, 196, 223, 426, 508, 600, 913, 938
MroXI GAANNNNTTC 1 cut(s) 909
MseI TTAA 7 cut(s) 327, 336, 567, 609, 642, 684, 690
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 2 cut(s) 36, 45
MspR9I CCNGG 2 cut(s) 526, 813
MvaI CCWGG 2 cut(s) 526, 813
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 70, 398, 518, 856
NdeII GATC 2 cut(s) 124, 283
NlaIII CATG 3 cut(s) 86, 275, 559
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 31, 277
NruI TCGCGA 1 cut(s) 114
PagI TCATGA 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 153
PceI AGGCCT 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 2 cut(s) 476, 727
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 5 cut(s) 8, 394, 523, 622, 625
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 684
Psp124BI GAGCTC 2 cut(s) 166, 652
Psp6I CCWGG 2 cut(s) 524, 811
PspGI CCWGG 2 cut(s) 524, 811
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 587
PstI CTGCAG 2 cut(s) 313, 625
PsuI RGATCY 1 cut(s) 283
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 1 cut(s) 809
RsaNI GTAC 1 cut(s) 808
SacI GAGCTC 2 cut(s) 166, 652
SaqAI TTAA 7 cut(s) 327, 336, 567, 609, 642, 684, 690
SatI GCNGC 5 cut(s) 7, 393, 522, 621, 624
Sau3AI GATC 2 cut(s) 124, 283
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 526, 813
SduI GDGCHC 3 cut(s) 144, 166, 652
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 3 cut(s) 309, 387, 621
SgrAI CRCCGGYG 1 cut(s) 35
SinI GGWCC 1 cut(s) 587
SmlI CTYRAG 2 cut(s) 165, 929
SmoI CTYRAG 2 cut(s) 165, 929
Sse9I AATT 7 cut(s) 337, 530, 564, 792, 905, 961, 970
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 4 cut(s) 9, 87, 393, 839
SspMI CTAG 1 cut(s) 738
SstI GAGCTC 2 cut(s) 166, 652
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 524, 811
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 2 cut(s) 97, 940
TaqI TCGA 3 cut(s) 418, 652, 715
TasI AATT 7 cut(s) 337, 530, 564, 792, 905, 961, 970
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 2 cut(s) 476, 727
Tru1I TTAA 7 cut(s) 327, 336, 567, 609, 642, 684, 690
Tru9I TTAA 7 cut(s) 327, 336, 567, 609, 642, 684, 690
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 31, 277
TseI GCWGC 4 cut(s) 6, 521, 620, 623
Tsp45I GTSAC 2 cut(s) 31, 277
TspDTI ATGAA 2 cut(s) 71, 898
TspGWI ACGGA 2 cut(s) 423, 903
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 587
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 4 cut(s) 530, 792, 905, 961
XmnI GAANNNNTTC 1 cut(s) 909
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.