Rorug01G0016800

reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000539
Physical Location & Seq
Reverse (-)
2884489 .. 2886412
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0016800.1

Sequence Viewer

Length: 681 bp
ATGCCGACTCCTAAGGAAGCAGCTCTTGAAAGAGAGAGAGAGATATGGACGATCAAGGAGCGGAAAATAAACGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTACTGAATTTGAAGAAAAAAATAAGCCACTCAAGGAGGCCTTTCAGGCCAAGAGGCAGAGTGTACGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCCATTATAAGGGAGCACAAACAGCCAATGCCAGTGACAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAAGTGGTCACAAGCAGAGAGAGATAATCTGGACACGCTACAGTCAAAGATAGATGAGAAATGGGACAATTTAATTACTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGAGTGACGATGATGATTGTAAAATGTTAAAAAAGGACTGGATTGACGATGATGGACTTCTTGCTCGTGTCTGGGGTTTCAAATTACCATCTTGCTTTTCAGCTGATTTTAAATTTCGTTTGGCAACTATTTGGATTGATGCTATTTTTAATACGTTGTGCGAGGAGTTGAAGACAGTTGAAGTCTTGAAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

226

Amino Acids

26.72

Weight (kDa)

6.07

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 1 cut(s) 115
AciI CCGC 1 cut(s) 61
AcsI RAATTY 6 cut(s) 109, 128, 212, 236, 415, 596
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 247, 276
AgsI TTSAA 8 cut(s) 29, 98, 134, 420, 565, 655, 665, 673
AluBI AGCT 2 cut(s) 23, 587
AluI AGCT 2 cut(s) 23, 587
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 2 cut(s) 159, 168
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 6 cut(s) 109, 128, 212, 236, 415, 596
AxyI CCTNAGG 1 cut(s) 12
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 530, 580
BcoDI GTCTC 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmsI GCATC 2 cut(s) 454, 613
BpiI GAAGAC 1 cut(s) 662
BpuEI CTTGAG 3 cut(s) 137, 419, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 276
Bse1I ACTGG 2 cut(s) 270, 527
Bse21I CCTNAGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 247, 276
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 2 cut(s) 270, 527
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 161, 170
BsiHKAI GWGCWC 1 cut(s) 256
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 247, 276
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 2 cut(s) 161, 170
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 51, 229
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 161, 170
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 270, 527
BssMI GATC 2 cut(s) 51, 229
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 2 cut(s) 357, 661
BstC8I GCNNGC 2 cut(s) 117, 294
BstDEI CTNAG 2 cut(s) 12, 89
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 115
BstKTI GATC 2 cut(s) 54, 232
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 51, 229
BstMWI GCNNNNNNNGC 2 cut(s) 167, 260
BstNSI RCATGY 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 662
Bsu36I CCTNAGG 1 cut(s) 12
BsuRI GGCC 2 cut(s) 161, 170
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 277, 426
Cac8I GCNNGC 2 cut(s) 117, 294
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 293
CviJI RGCY 7 cut(s) 23, 148, 161, 170, 263, 442, 587
CviKI_1 RGCY 7 cut(s) 23, 148, 161, 170, 263, 442, 587
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 12, 89
DpnI GATC 2 cut(s) 53, 231
DpnII GATC 2 cut(s) 51, 229
DraI TTTAAA 1 cut(s) 595
Eco147I AGGCCT 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 12
EcoRI GAATTC 2 cut(s) 109, 236
EcoT22I ATGCAT 1 cut(s) 469
FaeI CATG 1 cut(s) 296
FaiI YATR 6 cut(s) 46, 246, 294, 462, 469, 679
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 146, 178
FaqI GGGAC 1 cut(s) 392
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 161, 170
Hin1II CATG 1 cut(s) 296
HinfI GANTC 2 cut(s) 7, 453
Hpy166II GTNNAC 2 cut(s) 185, 457
Hpy188I TCNGA 3 cut(s) 92, 411, 452
Hpy188III TCNNGA 7 cut(s) 26, 196, 233, 344, 398, 484, 670
Hpy8I GTNNAC 2 cut(s) 185, 457
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 357, 661
HpyCH4IV ACGT 2 cut(s) 187, 638
HpyCH4V TGCA 2 cut(s) 292, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 260
HpyF3I CTNAG 2 cut(s) 12, 89
HpySE526I ACGT 2 cut(s) 187, 638
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 2 cut(s) 51, 229
LmnI GCTCC 2 cut(s) 58, 251
LpnPI CCDG 7 cut(s) 152, 176, 262, 283, 329, 508, 541
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 454, 613
MaeII ACGT 2 cut(s) 187, 638
MaeIII GTNAC 3 cut(s) 272, 321, 488
MalI GATC 2 cut(s) 53, 231
MbiI CCGCTC 1 cut(s) 61
MboI GATC 2 cut(s) 51, 229
MboII GAAGA 3 cut(s) 95, 146, 667
MhlI GDGCHC 1 cut(s) 256
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 4 cut(s) 151, 168, 458, 640
Mph1103I ATGCAT 1 cut(s) 469
MseI TTAA 7 cut(s) 216, 315, 386, 474, 512, 594, 633
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 587
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 167, 260
NdeII GATC 2 cut(s) 51, 229
NlaIII CATG 1 cut(s) 296
NmuCI GTSAC 3 cut(s) 272, 321, 488
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 296
PaeI GCATGC 1 cut(s) 296
PceI AGGCCT 1 cut(s) 161
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PsiI TTATAA 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 7 cut(s) 216, 315, 386, 474, 512, 594, 633
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 51, 229
SchI GAGTC 1 cut(s) 462
SduI GDGCHC 1 cut(s) 256
SetI ASST 6 cut(s) 25, 190, 195, 281, 589, 641
SfaNI GCATC 2 cut(s) 454, 613
SfcI CTRYAG 1 cut(s) 353
SfiI GGCCNNNNNGGCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 3 cut(s) 152, 398, 482
SmoI CTYRAG 3 cut(s) 152, 398, 482
SphI GCATGC 1 cut(s) 296
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 1 cut(s) 61
StuI AGGCCT 1 cut(s) 161
TaaI ACNGT 2 cut(s) 357, 661
TaiI ACGT 2 cut(s) 190, 641
Tru1I TTAA 7 cut(s) 216, 315, 386, 474, 512, 594, 633
Tru9I TTAA 7 cut(s) 216, 315, 386, 474, 512, 594, 633
TscAI CASTG 2 cut(s) 277, 433
TseFI GTSAC 3 cut(s) 272, 321, 488
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 3 cut(s) 272, 321, 488
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 2 cut(s) 277, 433
XapI RAATTY 6 cut(s) 109, 128, 212, 236, 415, 596
XceI RCATGY 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.