Rmu_sc0007650.1_g000001

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007650.1
OG0000539
Physical Location & Seq
Reverse (-)
1050 .. 3619
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007650.1_g000001.1.cds

Sequence Viewer

Length: 708 bp
atgttgctagctcttaatctttctcaggcagaattaattgagcctgctttgaaaggaacgcttaatgtcctcggatcgtgtgtgaaggttcagtctatcaaaagggtggttataacatcctctatggcagcagttggatttaatggaaaacctcttgctgctgatgtaataatcgatgaatcttggttttcagatcctgctttttgtgaaaaaacgaagctttggtatatgctttcaaagacattagctgaggaagctgcttggaagtttgcaaaagaaaaaggaattgatattattacaataaatccgggatgggtgatcggtcctctcttacagccaactctgaacttgagtgtggaactagttctgaaactcgtaaatgggaccgaaaagtttcccaacaaaacatacagacttgttgatgttagagatgttgctaatgcacatattctagcctttgaaaacccatcagctactggacgttattgtttagttggaagcgtaaaacactgttcagaggttgtgaaaatgttgtacgagatctcccctgctctcaatcttccagataaatgtgcagatgacaagcccttcacaccaacttaccaagtatccaaggaaagaacccaaactttgggtgtaaagtatactccgcttgaagtgtctctgaaggatactattgaaagtttgaagaacaagaacttcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

235

Amino Acids

25.99

Weight (kDa)

8.18

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 631
AccI GTMKAC 1 cut(s) 644
AciI CCGC 1 cut(s) 650
AclWI GGATC 2 cut(s) 82, 188
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 1 cut(s) 631
AgsI TTSAA 6 cut(s) 52, 237, 461, 656, 680, 688
AhlI ACTAGT 1 cut(s) 361
AluBI AGCT 5 cut(s) 11, 220, 248, 257, 473
AluI AGCT 5 cut(s) 11, 220, 248, 257, 473
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 2 cut(s) 82, 188
AlwNI CAGNNNCTG 2 cut(s) 197, 476
ApeKI GCWGC 3 cut(s) 128, 158, 257
AseI ATTAAT 1 cut(s) 35
Asp700I GAANNNNTTC 3 cut(s) 363, 393, 701
AspS9I GGNCC 2 cut(s) 323, 384
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 328
AsuNHI GCTAGC 1 cut(s) 7
AvaII GGWCC 2 cut(s) 323, 384
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 140, 145, 244
BccI CCATC 2 cut(s) 306, 475
BciVI GTATCC 2 cut(s) 619, 664
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 666
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 3 cut(s) 8, 362, 452
BfuI GTATCC 2 cut(s) 619, 664
BglII AGATCT 1 cut(s) 540
BisI GCNGC 3 cut(s) 129, 159, 258
BlsI GCNGC 3 cut(s) 130, 160, 259
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 323, 384
BmgT120I GGNCC 2 cut(s) 323, 384
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 309
BmtI GCTAGC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 309
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 70, 612
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 70, 612
BseGI GGATG 2 cut(s) 116, 317
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 38, 240
BseNI ACTGG 1 cut(s) 481
BseXI GCAGC 3 cut(s) 140, 145, 244
BsgI GTGCAG 1 cut(s) 594
BshVI ATCGAT 1 cut(s) 174
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 74, 193, 318, 540
BspACI CCGC 1 cut(s) 650
BspCNI CTCAG 2 cut(s) 37, 241
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 385
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 2 cut(s) 82, 188
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 70, 612
BssMI GATC 4 cut(s) 74, 193, 318, 540
BssNAI GTATAC 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 612
Bst1107I GTATAC 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 9, 45
BstDEI CTNAG 2 cut(s) 24, 249
BstF5I GGATG 2 cut(s) 116, 317
BstKTI GATC 4 cut(s) 77, 196, 321, 543
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 4 cut(s) 74, 193, 318, 540
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 140, 145, 244
BstX2I RGATCY 2 cut(s) 193, 540
BstYI RGATCY 2 cut(s) 193, 540
BstZ17I GTATAC 1 cut(s) 645
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 2 cut(s) 619, 664
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 2 cut(s) 116, 317
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 9, 45
CaiI CAGNNNCTG 2 cut(s) 197, 476
Cfr13I GGNCC 2 cut(s) 323, 384
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 535
CviJI RGCY 9 cut(s) 11, 43, 220, 248, 257, 337, 455, 473, 586
CviKI_1 RGCY 9 cut(s) 11, 43, 220, 248, 257, 337, 455, 473, 586
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 2 cut(s) 24, 249
DpnI GATC 4 cut(s) 76, 195, 320, 542
DpnII GATC 4 cut(s) 74, 193, 318, 540
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 2 cut(s) 323, 384
Eco57I CTGAAG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaiI YATR 7 cut(s) 113, 125, 228, 230, 409, 447, 645
FalI AAGNNNNNCTT 3 cut(s) 45, 77, 686
FaqI GGGAC 1 cut(s) 397
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 3 cut(s) 129, 159, 258
FokI GGATG 2 cut(s) 103, 324
Fsp4HI GCNGC 3 cut(s) 129, 159, 258
FspBI CTAG 3 cut(s) 8, 362, 452
GluI GCNGC 3 cut(s) 129, 159, 258
HapII CCGG 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 6 cut(s) 74, 193, 345, 369, 517, 666
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 1 cut(s) 645
HpyAV CCTTC 3 cut(s) 79, 598, 661
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 3 cut(s) 272, 443, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 24, 249
HpySE526I ACGT 1 cut(s) 481
Kzo9I GATC 4 cut(s) 74, 193, 318, 540
LpnPI CCDG 7 cut(s) 11, 57, 210, 321, 462, 561, 576
Lsp1109I GCAGC 3 cut(s) 140, 145, 244
MaeI CTAG 3 cut(s) 8, 362, 452
MaeII ACGT 1 cut(s) 481
MalI GATC 4 cut(s) 76, 195, 320, 542
MboI GATC 4 cut(s) 74, 193, 318, 540
MboII GAAGA 3 cut(s) 551, 694, 700
MflI RGATCY 2 cut(s) 193, 540
MluCI AATT 3 cut(s) 32, 36, 285
MmeI TCCRAC 2 cut(s) 115, 475
MnlI CCTC 6 cut(s) 80, 130, 162, 244, 336, 511
MroXI GAANNNNTTC 3 cut(s) 363, 393, 701
MseI TTAA 4 cut(s) 15, 35, 63, 141
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 309
NdeII GATC 4 cut(s) 74, 193, 318, 540
NheI GCTAGC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 385
PdmI GAANNNNTTC 3 cut(s) 363, 393, 701
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 631
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 3 cut(s) 130, 160, 259
PshBI ATTAAT 1 cut(s) 35
PsiI TTATAA 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 2 cut(s) 323, 384
PstNI CAGNNNCTG 2 cut(s) 197, 476
PsuI RGATCY 2 cut(s) 193, 540
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SaqAI TTAA 4 cut(s) 15, 35, 63, 141
SatI GCNGC 3 cut(s) 129, 159, 258
Sau3AI GATC 4 cut(s) 74, 193, 318, 540
Sau96I GGNCC 2 cut(s) 323, 384
ScrFI CCNGG 1 cut(s) 309
SetI ASST 9 cut(s) 13, 90, 154, 222, 250, 259, 475, 484, 522
SinI GGWCC 2 cut(s) 323, 384
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SpeI ACTAGT 1 cut(s) 361
Sse9I AATT 3 cut(s) 32, 36, 285
SsiI CCGC 1 cut(s) 650
SspMI CTAG 3 cut(s) 8, 362, 452
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 1 cut(s) 484
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 2 cut(s) 311, 401
TasI AATT 3 cut(s) 32, 36, 285
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 4 cut(s) 15, 35, 63, 141
Tru9I TTAA 4 cut(s) 15, 35, 63, 141
TscAI CASTG 1 cut(s) 515
TseI GCWGC 3 cut(s) 128, 158, 257
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 323, 384
VspI ATTAAT 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 644
XmnI GAANNNNTTC 3 cut(s) 363, 393, 701
XspI CTAG 3 cut(s) 8, 362, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.