Rorug05G0270500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000539
Physical Location & Seq
Forward (+)
30516048 .. 30517811
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0270500.1

Sequence Viewer

Length: 963 bp
ATGGGCGGTGGTCCCATACCCAATAGTTCAGGTGGGTCCAGCGGTACCTGCATCTGTATGACTGGCCCCGGTACCAATGTGCCGGTGCCGGGCCGACTACGCCTGGTGCTGCGTGATTGTTCGCTCTGCGCTGGGTTGGCGGTGGCCTCCAGCATCCTCTTCAGTTCTTCAAAGCGTGACATCAGCATAGCCACTTGTCTCTGGGCCTCAGCCTTTTTTCTGCGCTCCTCCTCACGCTCTCTATTTGCCTTGTGGAGGTCCGCCAGTGCCAGCTCGTACATAGTGGTGAGATCTTGGCCCGGCGGGCGGCTGCTGCTTGGATTTGTCTCACCGCCGGGGTTGTTGGCTGGGGTTGTGAATAGTGTGCGGTTAACGCCTACCGCTGGGTCGGGGGGGTTGGGGAATGGTGGACTGGTCTGCCTGCTCTTCAGCGTTTCCCCCGCTACCGCTAGTCATGTCAATAAGGCTGTTTTCTCCATTGCAATTCATCTAGCTAGGGGGATTCGAGTTGCACTTGCACCAGCTATTCTTGCTCACATTTATAGAGATTTGAGTCTGCTCAAAAGGAAAATTGTATCTTCAAATGAATTAAATGTCAAGAATGCTTTTGTACTAGAACTCATAATCAAGTCACAGTTTCAATTAGTTCAGGTTTGGGCATGGGAACGATTTCTGGAACTTAGGCCAAAGCCCAAAGTTATATGCTATGGTGAGCCGAGATTGGCTCGATGGGATAAAGTAGACTGTCTGAATGTTGGAGATATGAGGAGGGTTTTAGACTCAGCAGGTGAAGGTTTCATGTGGCGCCCTTATGCCATGGCCATTAAGAACTGGAATTTTCCTAAATACTATGTTGAAAAGGAAGAGTGGGTTTTGGTTGGTGCAGGCTTGGATGATGAACTATTGTCATTTGCCATGTGCTTGAGGGTGGCTGAGTTAGTTGGATTTGATACTATACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

320

Amino Acids

34.65

Weight (kDa)

9.57

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 147 - 319 4.4e-39 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 776
Acc36I ACCTGC 2 cut(s) 56, 776
Acc65I GGTACC 2 cut(s) 44, 71
AccB1I GGYRCC 4 cut(s) 44, 71, 85, 804
AccI GTMKAC 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 2 cut(s) 145, 412
AcyI GRCGYC 1 cut(s) 805
AfaI GTAC 4 cut(s) 46, 73, 278, 612
AfiI CCNNNNNNNGG 4 cut(s) 89, 255, 306, 383
AgsI TTSAA 4 cut(s) 171, 582, 641, 857
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 3 cut(s) 273, 494, 524
AluI AGCT 3 cut(s) 273, 494, 524
Alw26I GTCTC 2 cut(s) 203, 331
AoxI GGCC 7 cut(s) 64, 91, 144, 204, 296, 683, 819
ApeKI GCWGC 3 cut(s) 109, 310, 313
ApoI RAATTY 1 cut(s) 835
Asp700I GAANNNNTTC 1 cut(s) 669
Asp718I GGTACC 2 cut(s) 44, 71
AspLEI GCGC 3 cut(s) 131, 225, 807
AspS9I GGNCC 7 cut(s) 11, 36, 65, 91, 204, 258, 297
AsuC2I CCSGG 4 cut(s) 69, 90, 300, 336
AsuHPI GGTGA 4 cut(s) 298, 321, 722, 800
AvaII GGWCC 3 cut(s) 11, 36, 258
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BalI TGGCCA 1 cut(s) 821
BanI GGYRCC 4 cut(s) 44, 71, 85, 804
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 96, 297, 300
BccI CCATC 1 cut(s) 723
BciT130I CCWGG 1 cut(s) 104
BcnI CCSGG 4 cut(s) 69, 90, 300, 336
BcoDI GTCTC 2 cut(s) 203, 331
BfaI CTAG 4 cut(s) 450, 491, 495, 614
BfoI RGCGCY 1 cut(s) 808
BfuAI ACCTGC 2 cut(s) 56, 776
BglI GCCNNNNNGGC 1 cut(s) 304
BglII AGATCT 1 cut(s) 290
BisI GCNGC 4 cut(s) 110, 308, 311, 314
BlsI GCNGC 4 cut(s) 111, 309, 312, 315
Bme1390I CCNGG 5 cut(s) 69, 90, 104, 300, 336
Bme18I GGWCC 3 cut(s) 11, 36, 258
BmgT120I GGNCC 7 cut(s) 11, 36, 65, 91, 204, 258, 297
BmiI GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 87, 806
BmrFI CCNGG 5 cut(s) 69, 90, 104, 300, 336
BmsI GCATC 2 cut(s) 60, 162
BplI GAGNNNNNCTC 2 cut(s) 709, 741
BpmI CTGGAG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 4 cut(s) 69, 90, 300, 336
BsaHI GRCGYC 1 cut(s) 805
BsaJI CCNNGG 3 cut(s) 67, 335, 816
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 255, 306, 383
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 4 cut(s) 67, 264, 417, 836
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 67, 335, 816
BseGI GGATG 2 cut(s) 153, 898
BseLI CCNNNNNNNGG 4 cut(s) 89, 255, 306, 383
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 3 cut(s) 222, 795, 924
BseNI ACTGG 4 cut(s) 67, 264, 417, 836
BseRI GAGGAG 3 cut(s) 217, 220, 781
BseXI GCAGC 3 cut(s) 96, 297, 300
BseYI CCCAGC 3 cut(s) 131, 347, 383
BsgI GTGCAG 1 cut(s) 903
BshFI GGCC 7 cut(s) 66, 93, 146, 206, 298, 685, 821
BshNI GGYRCC 4 cut(s) 44, 71, 85, 804
BsiSI CCGG 5 cut(s) 69, 83, 89, 300, 335
BslI CCNNNNNNNGG 4 cut(s) 89, 255, 306, 383
BsmAI GTCTC 2 cut(s) 203, 331
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 7 cut(s) 66, 93, 146, 206, 298, 685, 821
Bsp143I GATC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 816
BspANI GGCC 7 cut(s) 66, 93, 146, 206, 298, 685, 821
BspCNI CTCAG 3 cut(s) 221, 794, 925
BspLI GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 87, 806
BspMI ACCTGC 2 cut(s) 56, 776
BspQI GCTCTTC 1 cut(s) 431
BspT107I GGYRCC 4 cut(s) 44, 71, 85, 804
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 4 cut(s) 67, 264, 417, 836
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 67, 335, 816
BssMI GATC 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 805
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 636, 746
Bst6I CTCTTC 3 cut(s) 164, 431, 858
BstACI GRCGYC 1 cut(s) 805
BstC8I GCNNGC 4 cut(s) 271, 305, 422, 886
BstDEI CTNAG 4 cut(s) 208, 680, 781, 933
BstDSI CCRYGG 1 cut(s) 816
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 153, 898
BstH2I RGCGCY 1 cut(s) 808
BstHHI GCGC 3 cut(s) 131, 225, 807
BstKTI GATC 1 cut(s) 293
BstMAI GTCTC 2 cut(s) 203, 331
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 7 cut(s) 48, 99, 137, 304, 313, 373, 530
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 5 cut(s) 67, 88, 102, 298, 334
BstV1I GCAGC 3 cut(s) 96, 297, 300
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 7 cut(s) 66, 93, 146, 206, 298, 685, 821
BtgI CCRYGG 1 cut(s) 816
BtsCI GGATG 2 cut(s) 153, 898
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 2 cut(s) 56, 776
Cac8I GCNNGC 4 cut(s) 271, 305, 422, 886
CfoI GCGC 3 cut(s) 131, 225, 807
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 7 cut(s) 11, 36, 65, 91, 204, 258, 297
Csp6I GTAC 4 cut(s) 45, 72, 277, 611
CviAII CATG 5 cut(s) 455, 660, 799, 817, 916
CviQI GTAC 4 cut(s) 45, 72, 277, 611
DdeI CTNAG 4 cut(s) 208, 680, 781, 933
DinI GGCGCC 1 cut(s) 806
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 3 cut(s) 164, 431, 858
EarI CTCTTC 3 cut(s) 164, 431, 858
EciI GGCGGA 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 816
Eco47I GGWCC 3 cut(s) 11, 36, 258
Eco57I CTGAAG 2 cut(s) 145, 412
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 816
EgeI GGCGCC 1 cut(s) 806
EheI GGCGCC 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 5 cut(s) 458, 663, 802, 820, 919
FatI CATG 5 cut(s) 454, 659, 798, 816, 915
FauI CCCGC 2 cut(s) 296, 448
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 4 cut(s) 110, 308, 311, 314
FokI GGATG 2 cut(s) 140, 905
Fsp4HI GCNGC 4 cut(s) 110, 308, 311, 314
FspBI CTAG 4 cut(s) 450, 491, 495, 614
GlaI GCGC 3 cut(s) 130, 224, 806
GluI GCNGC 4 cut(s) 110, 308, 311, 314
GsaI CCCAGC 3 cut(s) 135, 351, 387
GsuI CTGGAG 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 808
HaeIII GGCC 7 cut(s) 66, 93, 146, 206, 298, 685, 821
HapII CCGG 5 cut(s) 69, 83, 89, 300, 335
HhaI GCGC 3 cut(s) 131, 225, 807
Hin1I GRCGYC 1 cut(s) 805
Hin1II CATG 5 cut(s) 458, 663, 802, 820, 919
Hin6I GCGC 3 cut(s) 129, 223, 805
HinP1I GCGC 3 cut(s) 129, 223, 805
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 3 cut(s) 502, 553, 779
HpaI GTTAAC 1 cut(s) 372
HpaII CCGG 5 cut(s) 69, 83, 89, 300, 335
HphI GGTGA 4 cut(s) 298, 321, 722, 800
Hpy166II GTNNAC 3 cut(s) 372, 410, 742
Hpy188I TCNGA 1 cut(s) 750
Hpy188III TCNNGA 2 cut(s) 598, 674
Hpy8I GTNNAC 3 cut(s) 372, 410, 742
HpyAV CCTTC 1 cut(s) 785
HpyCH4III ACNGT 2 cut(s) 636, 746
HpyCH4V TGCA 5 cut(s) 51, 482, 512, 518, 884
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 99, 137, 304, 313, 373, 530
HpyF3I CTNAG 4 cut(s) 208, 680, 781, 933
Hsp92I GRCGYC 1 cut(s) 805
Hsp92II CATG 5 cut(s) 458, 663, 802, 820, 919
HspAI GCGC 3 cut(s) 129, 223, 805
KasI GGCGCC 1 cut(s) 804
KpnI GGTACC 2 cut(s) 48, 75
KspAI GTTAAC 1 cut(s) 372
Kzo9I GATC 1 cut(s) 290
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 96, 297, 300
LweI GCATC 2 cut(s) 60, 162
MaeI CTAG 4 cut(s) 450, 491, 495, 614
MaeIII GTNAC 2 cut(s) 176, 630
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MboII GAAGA 5 cut(s) 151, 159, 418, 570, 875
MflI RGATCY 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 5 cut(s) 483, 570, 587, 641, 835
MluNI TGGCCA 1 cut(s) 821
Mly113I GGCGCC 1 cut(s) 805
MlyI GAGTC 2 cut(s) 562, 773
MmeI TCCRAC 2 cut(s) 736, 922
MnlI CCTC 9 cut(s) 157, 167, 217, 238, 241, 249, 759, 762, 918
Mox20I TGGCCA 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 669
MscI TGGCCA 1 cut(s) 821
MseI TTAA 3 cut(s) 371, 590, 825
MslI CAYNNNNRTG 2 cut(s) 56, 284
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 42, 383
MspI CCGG 5 cut(s) 69, 83, 89, 300, 335
MspR9I CCNGG 5 cut(s) 69, 90, 104, 300, 336
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 7 cut(s) 48, 99, 137, 304, 313, 373, 530
NarI GGCGCC 1 cut(s) 805
NciI CCSGG 4 cut(s) 69, 90, 300, 336
NcoI CCATGG 1 cut(s) 816
NdeII GATC 1 cut(s) 290
NlaIII CATG 5 cut(s) 458, 663, 802, 820, 919
NlaIV GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 87, 806
NmeAIII GCCGAG 1 cut(s) 741
NmuCI GTSAC 2 cut(s) 176, 630
PaqCI CACCTGC 1 cut(s) 776
PciSI GCTCTTC 1 cut(s) 431
PctI GAATGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 4 cut(s) 111, 309, 312, 315
PleI GAGTC 2 cut(s) 561, 773
PluTI GGCGCC 1 cut(s) 808
PpsI GAGTC 2 cut(s) 561, 773
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 3 cut(s) 131, 347, 383
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 7 cut(s) 13, 37, 46, 67, 73, 87, 806
PspPI GGNCC 7 cut(s) 11, 36, 65, 91, 204, 258, 297
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 4 cut(s) 46, 73, 278, 612
RsaNI GTAC 4 cut(s) 45, 72, 277, 611
RseI CAYNNNNRTG 2 cut(s) 56, 284
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 3 cut(s) 371, 590, 825
SatI GCNGC 4 cut(s) 110, 308, 311, 314
Sau3AI GATC 1 cut(s) 290
Sau96I GGNCC 7 cut(s) 11, 36, 65, 91, 204, 258, 297
SchI GAGTC 2 cut(s) 562, 773
ScrFI CCNGG 5 cut(s) 69, 90, 104, 300, 336
SetI ASST 9 cut(s) 34, 50, 260, 275, 496, 526, 654, 790, 796
SfaNI GCATC 2 cut(s) 60, 162
SfoI GGCGCC 1 cut(s) 806
SinI GGWCC 3 cut(s) 11, 36, 258
SmiMI CAYNNNNRTG 2 cut(s) 56, 284
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 5 cut(s) 483, 570, 587, 641, 835
SspDI GGCGCC 1 cut(s) 804
SspMI CTAG 4 cut(s) 450, 491, 495, 614
StyD4I CCNGG 5 cut(s) 67, 88, 102, 298, 334
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 2 cut(s) 636, 746
TaqI TCGA 2 cut(s) 505, 727
TasI AATT 5 cut(s) 483, 570, 587, 641, 835
TatI WGTACW 1 cut(s) 610
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 3 cut(s) 371, 590, 825
Tru9I TTAA 3 cut(s) 371, 590, 825
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 2 cut(s) 176, 630
TseI GCWGC 3 cut(s) 109, 310, 313
Tsp45I GTSAC 2 cut(s) 176, 630
TspDTI ATGAA 4 cut(s) 476, 600, 787, 912
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 3 cut(s) 11, 36, 258
XagI CCTNNNNNAGG 1 cut(s) 253
XapI RAATTY 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 4 cut(s) 450, 491, 495, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.