AT5G19440

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000539
Physical Location & Seq
Forward (+)
6556348 .. 6558373
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19440.1

Sequence Viewer

Length: 981 bp
ATGGCAAACAGTGGTGAAGGTAAAGTGGTGTGTGTAACAGGAGCCTCCGGTTACATCGCCTCATGGCTCGTCAAGTTCCTACTTAGCCGTGGCTACACTGTTAAGGCCTCCGTCCGTGATCCCAGTGATCCGAAAAAGACACAACACTTAGTTTCACTAGAAGGTGCAAAGGAAAGACTTCACTTGTTCAAAGCAGACCTTTTGGAACAAGGTTCTTTCGACTCTGCTATTGATGGTTGCCATGGAGTTTTCCACACTGCTTCTCCATTTTTTAATGATGCCAAAGACCCACAGGCTGAACTTATTGATCCTGCGGTCAAGGGGACGCTTAACGTTTTGAATTCGTGCGCCAAAGCCTCTTCGGTTAAGAGGGTTGTTGTAACCTCCTCCATGGCTGCCGTTGGTTACAATGGAAAACCACGCACACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTGAGCTTTGCGAGGCCTCCAAGATGTGGTATGTTCTATCCAAGACTTTGGCGGAAGATGCAGCTTGGAAACTCGCTAAAGAGAAAGGCTTAGACATTGTTACTATTAACCCGGCTATGGTGATCGGTCCTCTCCTACAGCCAACTCTGAACACGAGTGCTGCTGCTATATTAAACTTAATCAATGGTGCAAAGACTTTCCCAAACTTGAGTTTCGGATGGGTTAATGTAAAAGACGTAGCCAATGCGCACATCCAAGCATTTGAGGTCCCTTCAGCTAATGGGCGTTATTGTTTGGTCGAGCGTGTCGTTCACCACTCCGAGATTGTTAACATTCTACGTGAGCTTTACCCAAATCTCCCACTACCTGAAAGGTGTGTGGACGAGAATCCCTACGTGCCAACGTATCAAGTGTCCAAGGATAAAACGAGGAGCCTTGGCATAGACTACATACCCTTGAAGGTTAGCATCAAGGAGACCGTCGAGTCCTTGAAGGAAAAAGGTTTCGCACAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

326

Amino Acids

35.59

Weight (kDa)

6.66

Isoelectric Point (pI)

23.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 8 - 107 6.6e-11 NmrA-like family
Epimerase PF01370 10 - 247 8.8e-25 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 12 - 242 7.8e-19 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 12 - 201 1.1e-12 Male sterility protein
GDP_Man_Dehyd PF16363 12 - 243 7.6e-12 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 14 - 141 9.6e-13 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 946
Acc16I TGCGCA 1 cut(s) 711
AccB7I CCANNNNNTGG 1 cut(s) 489
AciI CCGC 2 cut(s) 314, 515
AclI AACGTT 1 cut(s) 333
AclWI GGATC 4 cut(s) 113, 122, 302, 455
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 720
AfiI CCNNNNNNNGG 2 cut(s) 489, 580
AgsI TTSAA 4 cut(s) 190, 340, 922, 955
AluBI AGCT 4 cut(s) 469, 527, 740, 808
AluI AGCT 4 cut(s) 469, 527, 740, 808
Alw26I GTCTC 1 cut(s) 932
AlwI GGATC 4 cut(s) 113, 122, 302, 455
AoxI GGCC 2 cut(s) 105, 477
ApeKI GCWGC 4 cut(s) 395, 524, 623, 626
ApoI RAATTY 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 2 cut(s) 350, 712
AspS9I GGNCC 2 cut(s) 590, 730
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 3 cut(s) 26, 595, 767
AvaII GGWCC 2 cut(s) 590, 730
BauI CACGAG 1 cut(s) 616
BbvI GCAGC 4 cut(s) 382, 536, 610, 613
BccI CCATC 2 cut(s) 227, 675
BceAI ACGGC 2 cut(s) 72, 383
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 932
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 599
BisI GCNGC 4 cut(s) 396, 525, 624, 627
BlsI GCNGC 4 cut(s) 397, 526, 625, 628
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 2 cut(s) 590, 730
BmgT120I GGNCC 2 cut(s) 590, 730
BmiI GGNNCC 3 cut(s) 43, 732, 896
BmrFI CCNGG 1 cut(s) 575
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 268, 511, 939
BmuI ACTGGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 691
BpuMI CCSGG 1 cut(s) 575
BsaAI YACGTR 2 cut(s) 803, 859
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 5 cut(s) 88, 241, 390, 879, 898
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 489, 580
Bse1I ACTGG 1 cut(s) 123
BseDI CCNNGG 5 cut(s) 88, 241, 390, 879, 898
BseGI GGATG 2 cut(s) 686, 714
BseLI CCNNNNNNNGG 2 cut(s) 489, 580
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 376, 907
BseXI GCAGC 4 cut(s) 382, 536, 610, 613
BshFI GGCC 2 cut(s) 107, 479
BsiSI CCGG 2 cut(s) 48, 575
BslFI GGGAC 2 cut(s) 337, 716
BslI CCNNNNNNNGG 2 cut(s) 489, 580
BsmAI GTCTC 1 cut(s) 932
BsmFI GGGAC 2 cut(s) 337, 716
BsnI GGCC 2 cut(s) 107, 479
Bso31I GGTCTC 1 cut(s) 932
Bsp143I GATC 5 cut(s) 118, 127, 307, 460, 585
Bsp19I CCATGG 2 cut(s) 241, 390
BspACI CCGC 2 cut(s) 314, 515
BspANI GGCC 2 cut(s) 107, 479
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 43, 732, 896
BspPI GGATC 4 cut(s) 113, 122, 302, 455
BspTNI GGTCTC 1 cut(s) 932
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 5 cut(s) 88, 241, 390, 879, 898
BssMI GATC 5 cut(s) 118, 127, 307, 460, 585
BssSI CACGAG 1 cut(s) 616
BssT1I CCWWGG 4 cut(s) 241, 390, 879, 898
Bst2BI CACGAG 1 cut(s) 616
Bst4CI ACNGT 5 cut(s) 11, 100, 439, 943, 975
Bst6I CTCTTC 1 cut(s) 364
BstBAI YACGTR 2 cut(s) 803, 859
BstDEI CTNAG 4 cut(s) 83, 148, 465, 553
BstDSI CCRYGG 3 cut(s) 88, 241, 390
BstF5I GGATG 2 cut(s) 686, 714
BstHHI GCGC 2 cut(s) 350, 712
BstKTI GATC 5 cut(s) 121, 130, 310, 463, 588
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 5 cut(s) 118, 127, 307, 460, 585
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 1 cut(s) 599
BstV1I GCAGC 4 cut(s) 382, 536, 610, 613
BstXI CCANNNNNNTGG 1 cut(s) 511
BsuRI GGCC 2 cut(s) 107, 479
BtgI CCRYGG 3 cut(s) 88, 241, 390
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 686, 714
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 4 cut(s) 16, 96, 130, 255
CfoI GCGC 2 cut(s) 350, 712
Cfr13I GGNCC 2 cut(s) 590, 730
CseI GACGC 1 cut(s) 334
CviAII CATG 3 cut(s) 63, 242, 391
DdeI CTNAG 4 cut(s) 83, 148, 465, 553
DpnI GATC 5 cut(s) 120, 129, 309, 462, 587
DpnII GATC 5 cut(s) 118, 127, 307, 460, 585
DrdI GACNNNNNNGTC 1 cut(s) 946
DseDI GACNNNNNNGTC 1 cut(s) 946
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 1 cut(s) 530
Eco130I CCWWGG 4 cut(s) 241, 390, 879, 898
Eco147I AGGCCT 2 cut(s) 107, 479
Eco31I GGTCTC 1 cut(s) 932
Eco47I GGWCC 2 cut(s) 590, 730
Eco57I CTGAAG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 340
EcoT14I CCWWGG 4 cut(s) 241, 390, 879, 898
ErhI CCWWGG 4 cut(s) 241, 390, 879, 898
FaeI CATG 3 cut(s) 66, 245, 394
FaiI YATR 8 cut(s) 64, 243, 392, 495, 581, 632, 905, 914
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 2 cut(s) 337, 716
FatI CATG 3 cut(s) 62, 241, 390
Fnu4HI GCNGC 4 cut(s) 396, 525, 624, 627
FokI GGATG 2 cut(s) 693, 701
Fsp4HI GCNGC 4 cut(s) 396, 525, 624, 627
FspAI RTGCGCAY 1 cut(s) 711
FspBI CTAG 1 cut(s) 158
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 2 cut(s) 349, 711
GluI GCNGC 4 cut(s) 396, 525, 624, 627
HaeIII GGCC 2 cut(s) 107, 479
HapII CCGG 2 cut(s) 48, 575
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 350, 712
Hin1II CATG 3 cut(s) 66, 245, 394
Hin6I GCGC 2 cut(s) 348, 710
HinP1I GCGC 2 cut(s) 348, 710
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 3 cut(s) 221, 850, 947
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 2 cut(s) 48, 575
HphI GGTGA 3 cut(s) 26, 595, 767
Hpy166II GTNNAC 3 cut(s) 775, 793, 844
Hpy188I TCNGA 6 cut(s) 132, 460, 612, 680, 784, 980
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 3 cut(s) 775, 793, 844
Hpy99I CGWCG 2 cut(s) 443, 947
HpyAV CCTTC 5 cut(s) 11, 155, 744, 916, 949
HpyCH4III ACNGT 5 cut(s) 11, 100, 439, 943, 975
HpyCH4IV ACGT 5 cut(s) 333, 699, 802, 858, 866
HpyCH4V TGCA 3 cut(s) 167, 524, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 4 cut(s) 83, 148, 465, 553
HpySE526I ACGT 5 cut(s) 333, 699, 802, 858, 866
Hsp92II CATG 3 cut(s) 66, 245, 394
HspAI GCGC 2 cut(s) 348, 710
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 5 cut(s) 118, 127, 307, 460, 585
LmnI GCTCC 2 cut(s) 41, 894
LpnPI CCDG 9 cut(s) 24, 61, 136, 278, 324, 441, 477, 588, 843
Lsp1109I GCAGC 4 cut(s) 382, 536, 610, 613
LweI GCATC 3 cut(s) 268, 511, 939
MaeI CTAG 1 cut(s) 158
MaeII ACGT 5 cut(s) 333, 699, 802, 858, 866
MaeIII GTNAC 6 cut(s) 34, 50, 379, 404, 433, 562
MalI GATC 5 cut(s) 120, 129, 309, 462, 587
MboI GATC 5 cut(s) 118, 127, 307, 460, 585
MboII GAAGA 2 cut(s) 351, 530
MluCI AATT 1 cut(s) 340
MlyI GAGTC 2 cut(s) 215, 956
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 9 cut(s) 102, 273, 330, 366, 570, 635, 641, 687, 792
MspI CCGG 2 cut(s) 48, 575
MspR9I CCNGG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 575
NcoI CCATGG 2 cut(s) 241, 390
NdeII GATC 5 cut(s) 118, 127, 307, 460, 585
NlaIII CATG 3 cut(s) 66, 245, 394
NlaIV GGNNCC 3 cut(s) 43, 732, 896
NsbI TGCGCA 1 cut(s) 711
PceI AGGCCT 2 cut(s) 107, 479
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 4 cut(s) 397, 526, 625, 628
PleI GAGTC 2 cut(s) 215, 955
PpsI GAGTC 2 cut(s) 215, 955
Ppu21I YACGTR 2 cut(s) 803, 859
PpuMI RGGWCCY 1 cut(s) 730
Psp1406I AACGTT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 730
PspN4I GGNNCC 3 cut(s) 43, 732, 896
PspPI GGNCC 2 cut(s) 590, 730
PspPPI RGGWCCY 1 cut(s) 730
SaqAI TTAA 9 cut(s) 102, 273, 330, 366, 570, 635, 641, 687, 792
SatI GCNGC 4 cut(s) 396, 525, 624, 627
Sau3AI GATC 5 cut(s) 118, 127, 307, 460, 585
Sau96I GGNCC 2 cut(s) 590, 730
SchI GAGTC 2 cut(s) 215, 956
ScrFI CCNGG 1 cut(s) 575
SfaNI GCATC 3 cut(s) 268, 511, 939
SfcI CTRYAG 1 cut(s) 599
SinI GGWCC 2 cut(s) 590, 730
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 1 cut(s) 340
SseBI AGGCCT 2 cut(s) 107, 479
SsiI CCGC 2 cut(s) 314, 515
SspMI CTAG 1 cut(s) 158
StuI AGGCCT 2 cut(s) 107, 479
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 4 cut(s) 241, 390, 879, 898
TaaI ACNGT 5 cut(s) 11, 100, 439, 943, 975
TaiI ACGT 5 cut(s) 336, 702, 805, 861, 869
TaqI TCGA 4 cut(s) 219, 441, 762, 945
TaqII GACCGA 1 cut(s) 578
TasI AATT 1 cut(s) 340
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 9 cut(s) 102, 273, 330, 366, 570, 635, 641, 687, 792
Tru9I TTAA 9 cut(s) 102, 273, 330, 366, 570, 635, 641, 687, 792
TscAI CASTG 4 cut(s) 16, 103, 130, 262
TseI GCWGC 4 cut(s) 395, 524, 623, 626
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 2 cut(s) 100, 104
TspRI CASTG 4 cut(s) 16, 103, 130, 262
Van91I CCANNNNNTGG 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 590, 730
XapI RAATTY 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.