Rmu_ssc0000324.1_g000001

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000324.1
OG0000539
Physical Location & Seq
Forward (+)
16279 .. 19107
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000324.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgtatatacctgcgttttctggaagtcgatcggggggccaagatgaatcaaatttctcaacctctcagcgagattcgctgatgcttaagaaactttggggggcaatccggatagagtccagtgtcaagtcagctgacgataaaggcaacacttcccccaacaagcgtcgactgcgattcctcacccaatcaagggatccggaaaggatacctaaagggactgaagaatttactaacacaacttacatgctcattgatgttagagatgttgccaatgcacatattctggcctttgagaacccatcagctagtggacgttattgtttggttgaaagcgtaaaacactgttcagaggttgtgaaaatgttgagcgatatctcccctgctcttaatcttccagataaatgtgcagatgacaaacctttcacaccaacttaccaagtatccaatgaaagagcccaaactttgggtgtaaagtatactcctcttgaattgtctctgaaggatactgttgaaagtttgaaggacaagaacttcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

180

Amino Acids

20.18

Weight (kDa)

7.67

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 2 cut(s) 169, 479
AccIII TCCGGA 2 cut(s) 108, 199
AclWI GGATC 2 cut(s) 191, 204
AcsI RAATTY 2 cut(s) 52, 227
AcuI CTGAAG 2 cut(s) 243, 521
AfiI CCNNNNNNNGG 3 cut(s) 192, 193, 466
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 4 cut(s) 332, 491, 515, 523
AluBI AGCT 2 cut(s) 134, 308
AluI AGCT 2 cut(s) 134, 308
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 191, 204
Aor13HI TCCGGA 2 cut(s) 108, 199
AoxI GGCC 2 cut(s) 37, 288
ApoI RAATTY 2 cut(s) 52, 227
Asp700I GAANNNNTTC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 175
BamHI GGATCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 460
BccI CCATC 1 cut(s) 310
BciVI GTATCC 3 cut(s) 201, 454, 499
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 309
BfrI CTTAAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 19
BfuI GTATCC 3 cut(s) 201, 454, 499
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 38, 198
BmsI GCATC 1 cut(s) 72
BsaWI WCCGGW 2 cut(s) 108, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 193, 466
Bse1I ACTGG 1 cut(s) 120
BseAI TCCGGA 2 cut(s) 108, 199
BseLI CCNNNNNNNGG 3 cut(s) 192, 193, 466
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 39, 290
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 109, 200
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 192, 193, 466
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 2 cut(s) 39, 290
Bsp1286I GDGCHC 1 cut(s) 460
Bsp13I TCCGGA 2 cut(s) 108, 199
Bsp143I GATC 2 cut(s) 29, 196
BspANI GGCC 2 cut(s) 39, 290
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 2 cut(s) 108, 199
BspLI GGNNCC 2 cut(s) 38, 198
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 2 cut(s) 191, 204
BspTI CTTAAG 1 cut(s) 86
BsrI ACTGG 1 cut(s) 120
BssMI GATC 2 cut(s) 29, 196
BssNAI GTATAC 1 cut(s) 480
Bst1107I GTATAC 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 347, 511
BstAFI CTTAAG 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 66
BstKTI GATC 2 cut(s) 32, 199
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 2 cut(s) 29, 196
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 76, 172
BstNSI RCATGY 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 480
BsuI GTATCC 3 cut(s) 201, 454, 499
BsuRI GGCC 2 cut(s) 39, 290
BtsIMutI CAGTG 2 cut(s) 127, 343
BveI ACCTGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 155
CviAII CATG 1 cut(s) 247
CviJI RGCY 5 cut(s) 39, 134, 290, 308, 458
CviKI_1 RGCY 5 cut(s) 39, 134, 290, 308, 458
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 31, 198
DpnII GATC 2 cut(s) 29, 196
Eco24I GRGCYC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 243, 521
EcoRV GATATC 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 460
FaeI CATG 1 cut(s) 250
FaiI YATR 5 cut(s) 6, 8, 248, 282, 480
FalI AAGNNNNNCTT 1 cut(s) 521
FaqI GGGAC 1 cut(s) 232
FatI CATG 1 cut(s) 246
FblI GTMKAC 2 cut(s) 169, 479
FriOI GRGCYC 1 cut(s) 460
FspBI CTAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 39, 290
HapII CCGG 2 cut(s) 109, 200
HgaI GACGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HinfI GANTC 4 cut(s) 47, 74, 116, 177
HpaII CCGG 2 cut(s) 109, 200
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 3 cut(s) 170, 314, 480
Hpy188I TCNGA 2 cut(s) 352, 501
Hpy188III TCNNGA 5 cut(s) 21, 109, 200, 398, 488
Hpy8I GTNNAC 3 cut(s) 170, 314, 480
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 496, 517
HpyCH4III ACNGT 2 cut(s) 347, 511
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 278, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 172
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 250
Kpn2I TCCGGA 2 cut(s) 108, 199
Kzo9I GATC 2 cut(s) 29, 196
LpnPI CCDG 8 cut(s) 6, 24, 122, 133, 213, 272, 396, 411
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 316
MalI GATC 2 cut(s) 31, 198
MboI GATC 2 cut(s) 29, 196
MboII GAAGA 3 cut(s) 236, 386, 529
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 3 cut(s) 52, 227, 491
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 73, 191, 346, 495
MroI TCCGGA 2 cut(s) 108, 199
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 2 cut(s) 87, 390
MspA1I CMGCKG 1 cut(s) 134
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 2 cut(s) 109, 200
MwoI GCNNNNNNNGC 2 cut(s) 76, 172
NdeII GATC 2 cut(s) 29, 196
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 38, 198
NspI RCATGY 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 3 cut(s) 47, 74, 177
PflMI CCANNNNNTGG 1 cut(s) 466
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 38, 198
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 134
SalI GTCGAC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 87, 390
Sau3AI GATC 2 cut(s) 29, 196
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 460
SetI ASST 8 cut(s) 13, 65, 136, 214, 310, 319, 357, 424
SfaNI GCATC 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 3 cut(s) 52, 227, 491
SspMI CTAG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 347, 511
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 28, 169
TasI AATT 3 cut(s) 52, 227, 491
TfiI GAWTC 3 cut(s) 47, 74, 177
Tru1I TTAA 2 cut(s) 87, 390
Tru9I TTAA 2 cut(s) 87, 390
TscAI CASTG 2 cut(s) 127, 350
TspDTI ATGAA 2 cut(s) 60, 465
TspRI CASTG 2 cut(s) 127, 350
Van91I CCANNNNNTGG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 86
XapI RAATTY 2 cut(s) 52, 227
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 2 cut(s) 169, 479
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.