FvH4_3g28560

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000539
Physical Location & Seq
Forward (+)
21579315 .. 21586859
7545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28560.t2

Sequence Viewer

Length: 870 bp
ATGAGCAAGGTCGTCTGCGTCACCGGTGCTTCCGGTTACATTGCTTCATGGCTCGTCAAGCTGCTCCTCCAACGCGGCTACACTGTCAAGGCCTCTGTTCGCAACCCAAATGATCCAACAAAGACGGAGCACTTGCTTGCATTTGATGGAGCTAAGGAGAGACTTCACTTTTTTAAAGCAGATCTATTAGAAGAAGGTTCTTTTGATTCTGGTGTTGAGGGCTGTGAATGTGTTTTCCACACTGCGTCTCCCTTTTATCATGATGTGACAGACCCAAAGGCAGAACTACTTGATCCTGCAGTAAAGGGAACACTTAATGTTCTGAACTCGTGTTCAAAATCCCCATCTATCAAACGGGTGGTTTTAACATCTTCTATAGCCGCAGTTGCATATAATGGAAAGCCTCGAACTCCTGATGTAGTTGTTGATGAGACATGGTTTACTGATCCAGGTGTCTGTAAGGAACAGAAGCTATGGTATGTGCTTTCAAAGACTTTGGCAGAGGATGCTGCCTGGAAATTTGTAAAGGAGAAGGGAATTGACATGGTTACCATTAATCCTGCAATGGTTATTGGTCCTCTATTACAGCCAACGCTAAATACAAGTGCTGCTGCAGTTCTGAATGTTATTAAGGGAGCTCGAACATATCCTAATGCAAGTTTTGGATGGATTAATGTCAAAGATGTTGCCAATGCACATGTTCAAGCATTTGAGAATCCTTCGGCTAGTGGAAGATATTGTTTAGTCGAGAGAGTTGCACACTTTTCAGAAGTTGTGCAAATTTTACATGAGCTGTACCCTGATTTGCAACTTCCGGAAAAGTGTCCAAGGAAAAGGCAAAGAGCTTGGGTATTGAATTTGTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD Epimerase

Protein Analysis

290

Amino Acids

31.96

Weight (kDa)

8.39

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 1 - 100 3.2e-08 NmrA-like family
Epimerase PF01370 5 - 243 1e-23 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 7 - 238 1.5e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 7 - 201 2.9e-13 Male sterility protein
GDP_Man_Dehyd PF16363 7 - 258 7.5e-11 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 9 - 190 3.5e-10 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 2 cut(s) 75, 381
AclWI GGATC 3 cut(s) 107, 287, 440
AcsI RAATTY 3 cut(s) 518, 780, 856
AfaI GTAC 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 697
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 4 cut(s) 336, 489, 704, 856
AjnI CCWGG 2 cut(s) 448, 512
AluBI AGCT 6 cut(s) 61, 152, 472, 638, 793, 845
AluI AGCT 6 cut(s) 61, 152, 472, 638, 793, 845
Alw21I GWGCWC 2 cut(s) 132, 640
Alw26I GTCTC 3 cut(s) 154, 252, 425
AlwI GGATC 3 cut(s) 107, 287, 440
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 4 cut(s) 61, 509, 608, 611
ApoI RAATTY 3 cut(s) 518, 780, 856
AseI ATTAAT 2 cut(s) 555, 672
AsiGI ACCGGT 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 860
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 640
BauI CACGAG 1 cut(s) 328
Bbv12I GWGCWC 2 cut(s) 132, 640
BbvI GCAGC 4 cut(s) 48, 496, 595, 598
BccI CCATC 3 cut(s) 140, 352, 660
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 2 cut(s) 450, 514
BcoDI GTCTC 3 cut(s) 154, 252, 425
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 3 cut(s) 297, 375, 612
BglII AGATCT 1 cut(s) 181
BisI GCNGC 6 cut(s) 62, 76, 381, 510, 609, 612
BlsI GCNGC 6 cut(s) 63, 77, 382, 511, 610, 613
Bme1390I CCNGG 2 cut(s) 450, 514
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmrFI CCNGG 2 cut(s) 450, 514
BmsI GCATC 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 827
BsaWI WCCGGW 3 cut(s) 23, 32, 814
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bse118I RCCGGY 1 cut(s) 23
Bse3DI GCAATG 2 cut(s) 39, 570
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 2 cut(s) 450, 514
BseDI CCNNGG 1 cut(s) 827
BseGI GGATG 2 cut(s) 511, 671
BseMI GCAATG 2 cut(s) 39, 570
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 48, 496, 595, 598
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 92
BshTI ACCGGT 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 132, 640
BsiSI CCGG 3 cut(s) 24, 33, 815
BsmAI GTCTC 3 cut(s) 154, 252, 425
BsmBI CGTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 132, 640
Bsp13I TCCGGA 1 cut(s) 814
Bsp143I GATC 4 cut(s) 112, 181, 292, 445
BspACI CCGC 2 cut(s) 75, 381
BspANI GGCC 1 cut(s) 92
BspEI TCCGGA 1 cut(s) 814
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 259
BspMAI CTGCAG 2 cut(s) 301, 616
BspPI GGATC 3 cut(s) 107, 287, 440
BsrDI GCAATG 2 cut(s) 39, 570
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 827
BssMI GATC 4 cut(s) 112, 181, 292, 445
BssSI CACGAG 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 827
Bst2BI CACGAG 1 cut(s) 328
Bst2UI CCWGG 2 cut(s) 450, 514
Bst4CI ACNGT 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 547
BstF5I GGATG 2 cut(s) 511, 671
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 4 cut(s) 115, 184, 295, 448
BstMAI GTCTC 3 cut(s) 154, 252, 425
BstMBI GATC 4 cut(s) 112, 181, 292, 445
BstMWI GCNNNNNNNGC 3 cut(s) 58, 386, 506
BstNI CCWGG 2 cut(s) 450, 514
BstNSI RCATGY 1 cut(s) 701
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 448, 512
BstSFI CTRYAG 3 cut(s) 297, 375, 612
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 4 cut(s) 48, 496, 595, 598
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 511, 671
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 81, 240
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 2 cut(s) 7, 234
Csp6I GTAC 1 cut(s) 796
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 6 cut(s) 48, 260, 435, 544, 698, 788
CviQI GTAC 1 cut(s) 796
DdeI CTNAG 1 cut(s) 153
DpnI GATC 4 cut(s) 114, 183, 294, 447
DpnII GATC 4 cut(s) 112, 181, 292, 445
DraI TTTAAA 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 638
Eco130I CCWWGG 1 cut(s) 827
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 638
EcoO65I GGTNACC 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 448, 512
EcoT14I CCWWGG 1 cut(s) 827
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 827
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 6 cut(s) 51, 263, 438, 547, 701, 791
FatI CATG 6 cut(s) 47, 259, 434, 543, 697, 787
Fnu4HI GCNGC 6 cut(s) 62, 76, 381, 510, 609, 612
FokI GGATG 2 cut(s) 518, 678
FriOI GRGCYC 1 cut(s) 640
Fsp4HI GCNGC 6 cut(s) 62, 76, 381, 510, 609, 612
FspBI CTAG 1 cut(s) 726
GluI GCNGC 6 cut(s) 62, 76, 381, 510, 609, 612
HaeIII GGCC 1 cut(s) 92
HapII CCGG 3 cut(s) 24, 33, 815
HgaI GACGC 2 cut(s) 7, 234
Hin1II CATG 6 cut(s) 51, 263, 438, 547, 701, 791
HinfI GANTC 2 cut(s) 206, 715
HpaII CCGG 3 cut(s) 24, 33, 815
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 3 cut(s) 324, 621, 769
Hpy188III TCNNGA 4 cut(s) 260, 413, 748, 815
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 3 cut(s) 188, 526, 729
HpyCH4III ACNGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 386, 506
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 6 cut(s) 51, 263, 438, 547, 701, 791
Kpn2I TCCGGA 1 cut(s) 814
Kzo9I GATC 4 cut(s) 112, 181, 292, 445
LmnI GCTCC 4 cut(s) 69, 127, 149, 635
Lsp1109I GCAGC 4 cut(s) 48, 496, 595, 598
LweI GCATC 1 cut(s) 496
MaeI CTAG 1 cut(s) 726
MaeIII GTNAC 4 cut(s) 19, 35, 265, 547
MalI GATC 4 cut(s) 114, 183, 294, 447
MboI GATC 4 cut(s) 112, 181, 292, 445
MboII GAAGA 3 cut(s) 203, 363, 744
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 132, 640
MluCI AATT 4 cut(s) 518, 537, 780, 856
MmeI TCCRAC 2 cut(s) 94, 140
MnlI CCTC 6 cut(s) 77, 103, 211, 414, 496, 588
MroI TCCGGA 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 860
MseI TTAA 6 cut(s) 174, 315, 365, 555, 630, 672
MspI CCGG 3 cut(s) 24, 33, 815
MspR9I CCNGG 2 cut(s) 450, 514
MvaI CCWGG 2 cut(s) 450, 514
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 58, 386, 506
NdeII GATC 4 cut(s) 112, 181, 292, 445
NlaIII CATG 6 cut(s) 51, 263, 438, 547, 701, 791
NmuCI GTSAC 2 cut(s) 19, 265
NspI RCATGY 1 cut(s) 701
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 1 cut(s) 92
PciI ACATGT 1 cut(s) 697
PdmI GAANNNNTTC 1 cut(s) 860
PfeI GAWTC 2 cut(s) 206, 715
PinAI ACCGGT 1 cut(s) 23
PkrI GCNGC 6 cut(s) 63, 77, 382, 511, 610, 613
PscI ACATGT 1 cut(s) 697
PshBI ATTAAT 2 cut(s) 555, 672
Psp124BI GAGCTC 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 448, 512
PspEI GGTNACC 1 cut(s) 547
PspGI CCWGG 2 cut(s) 448, 512
PspPI GGNCC 1 cut(s) 575
PstI CTGCAG 2 cut(s) 301, 616
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
SacI GAGCTC 1 cut(s) 640
SaqAI TTAA 6 cut(s) 174, 315, 365, 555, 630, 672
SatI GCNGC 6 cut(s) 62, 76, 381, 510, 609, 612
Sau3AI GATC 4 cut(s) 112, 181, 292, 445
Sau96I GGNCC 1 cut(s) 575
ScrFI CCNGG 2 cut(s) 450, 514
SduI GDGCHC 2 cut(s) 132, 640
SetI ASST 9 cut(s) 12, 63, 154, 199, 454, 474, 640, 795, 847
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 3 cut(s) 297, 375, 612
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 575
Sse9I AATT 4 cut(s) 518, 537, 780, 856
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 2 cut(s) 75, 381
SspMI CTAG 1 cut(s) 726
SstI GAGCTC 1 cut(s) 640
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 448, 512
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 406, 640, 747
TasI AATT 4 cut(s) 518, 537, 780, 856
TauI GCSGC 2 cut(s) 78, 383
TfiI GAWTC 2 cut(s) 206, 715
Tru1I TTAA 6 cut(s) 174, 315, 365, 555, 630, 672
Tru9I TTAA 6 cut(s) 174, 315, 365, 555, 630, 672
TscAI CASTG 2 cut(s) 88, 247
TseFI GTSAC 2 cut(s) 19, 265
TseI GCWGC 4 cut(s) 61, 509, 608, 611
Tsp45I GTSAC 2 cut(s) 19, 265
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 2 cut(s) 140, 854
TspRI CASTG 2 cut(s) 88, 247
VpaK11BI GGWCC 1 cut(s) 575
VspI ATTAAT 2 cut(s) 555, 672
XapI RAATTY 3 cut(s) 518, 780, 856
XceI RCATGY 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 860
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.