RLG00000030589

reductase 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
63912091 .. 63915484
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030589

Sequence Viewer

Length: 969 bp
ATGAGTGGAGCAGAGAAGGTGGTGGTGAGCGTCACCGGAGCATCCGGTTACATTGCTTCATGGCTGGTCAAACTGTTGCTGCAACGCGGCTACACTGTCAAGGCCTCTGTTCGTGACCCAAATGACAAGAAGAAAACAGAACACTTGCTTGCGTTAGATGGAGCCAAGGAAAGGCTTCAATTGTTCAAAGCAGACTTACTTGAAGAAGGATCTTTTGATTCCTTAGTTGATGGTAGTGTAGCTGTTTTTCATACCGCATCCCCATTTTATCACAATCCCAATGATCCACAGGTACTCACGAAAGTTTGCTGGATCCTTACTAACATCTTGTGCAATCTACAAGATTCACTTTTAAAGTTTACAATCTGTAAAAAAGTGTTTATATGGTATGACTTTGGATACATTGAGTATGGAGACCAATGCAACAATCCCCTGTTAGATACTTTTGTTGTCAAATCAACTTTCTGTGAAAAATCAAAGGCTTGGTATATGCTTTCAAAGACATTAGCTGAGGAAGCTGCTTGGAAGTTTGCAAAAGAGAAAGGAATTGATATTGTTACAATAAATCCGGGATTGGTGATTGGCCCTCTCTTACAGCCAACTCTCAACACAAGTGTGGAGCCAATCCTGAAACTCATAAATGGGACTGAAAAATTTCCAAACACAACTTACAGATTTGTTGATGTTAGAGATGTTGCCAATGCACATATTCTAGCCTTTGAGAATCCTTCAGCTAGTGGACGCTATTGTTTAGTTGGAAGTGTAACACACTGTTCAGAGATTGTGAAAATTCTGCGTCATATCTTCCCTGCTCTCAGTCTTCCAGAAAAGCCTGCAGATGACAAACCTTTCACACCAACTTACCAGGTATCCAAGGAAAGAGCACAAACTTTGGGTGTAAAGTATACTCCGCTAGAAGTGACACTAAAGGATAATGTTGAAAGTTTGAAGGAGAAGAACTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

323

Amino Acids

36.05

Weight (kDa)

7.56

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 87 4.5e-09 NmrA-like family
Epimerase PF01370 10 - 246 4.7e-18 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 11 - 78 2.8e-07 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 13 - 88 5.6e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51410 AT5G19440
fragaria_vesca FvH4_3g28560 FvH4_3g28560 FvH4_3g28560 FvH4_7g01561 FvH4_7g01563 FvH4_7g01563 FvH4_7g01564 FvH4_7g01580 FvH4_7g01580 FvH4_7g01580 FvH4_7g05190
malus_domestica MD02G1302800.v1.1 MD02G1302900.v1.1 MD03G1172800.v1.1 MD07G1020700.v1.1 MD11G1190800.v1.1
prunus_persica Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.2G021600_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1 Prupe.4G253700_v2.0.a1
pyrus_communis pycom02g25510 pycom02g25520 pycom11g16630
rosa_chinensis RchiOBHm_Chr1g0316841 RchiOBHm_Chr1g0317331 RchiOBHm_Chr1g0317461 RchiOBHm_Chr1g0317621 RchiOBHm_Chr1g0317661 RchiOBHm_Chr1g0317681 RchiOBHm_Chr1g0317691 RchiOBHm_Chr1g0317701 RchiOBHm_Chr5g0052741
rosa_laevigata RLG00000030526 RLG00000030589 RLG00000030590 RLG00000030591 RLG00000030605 RLG00000034802
rosa_multiflora Rmu_co8392933.1_g000001 Rmu_sc0001158.1_g000003 Rmu_sc0003816.1_g000002 Rmu_sc0007650.1_g000001 Rmu_sc0007650.1_g000006 Rmu_sc0010265.1_g000014 Rmu_sc0019879.1_g000002 Rmu_ssc0000324.1_g000001
rosa_roxburghii Rroxscaffold_1G00028520 Rroxscaffold_4G00330220 Rroxscaffold_4G00330240 Rroxscaffold_4G00330250 Rroxscaffold_4G00330260 Rroxscaffold_4G00330270 Rroxscaffold_4G00330310 Rroxscaffold_4G00330480
rosa_rugosa Rorug01G0016000 Rorug01G0016500 Rorug01G0016700 Rorug01G0016800 Rorug01G0023900 Rorug05G0270400 Rorug05G0270500
rosa_samantha Rh1BG024200 Rh1BG024800 Rh1BG024900 Rh1BG025000 Rh1DG044100 Rh1DG044200 Rh1DG044400 Rh1DG044500 Rh1DG044800 Rh1DG045800 Rh5CG379500 Rh5DG369300
rosa_wichuraiana Rw1G001920 Rw1G002020 Rw1G002040 Rw1G002060 Rw1G002070 Rw1G002080 Rw5G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 905
AccII CGCG 1 cut(s) 87
AciI CCGC 3 cut(s) 87, 255, 911
AclWI GGATC 4 cut(s) 217, 278, 307, 320
AcsI RAATTY 2 cut(s) 653, 789
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 6 cut(s) 179, 187, 203, 498, 941, 949
AjnI CCWGG 1 cut(s) 864
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 4 cut(s) 242, 509, 518, 734
AluI AGCT 4 cut(s) 242, 509, 518, 734
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 4 cut(s) 217, 278, 307, 320
AoxI GGCC 2 cut(s) 102, 583
ApeKI GCWGC 2 cut(s) 79, 518
ApoI RAATTY 2 cut(s) 653, 789
Asp700I GAANNNNTTC 4 cut(s) 174, 654, 959, 962
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 25, 37, 589
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BamHI GGATCC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 1 cut(s) 886
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 66, 505
BccI CCATC 2 cut(s) 152, 224
BciT130I CCWGG 1 cut(s) 866
BciVI GTATCC 2 cut(s) 392, 880
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 3 cut(s) 713, 735, 914
BfmI CTRYAG 1 cut(s) 834
BfuI GTATCC 2 cut(s) 392, 880
BisI GCNGC 3 cut(s) 80, 88, 519
BlsI GCNGC 3 cut(s) 81, 89, 520
Bme1390I CCNGG 2 cut(s) 570, 866
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 3 cut(s) 163, 314, 621
BmrFI CCNGG 2 cut(s) 570, 866
BmsI GCATC 2 cut(s) 50, 266
BpiI GAAGAC 1 cut(s) 812
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 165, 873
BsaWI WCCGGW 2 cut(s) 35, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 866
BseDI CCNNGG 2 cut(s) 165, 873
BseGI GGATG 2 cut(s) 41, 257
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 501, 829
BseXI GCAGC 2 cut(s) 66, 505
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 104, 585
BsiHKAI GWGCWC 1 cut(s) 886
BsiSI CCGG 3 cut(s) 36, 45, 569
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 658
BsnI GGCC 2 cut(s) 104, 585
Bso31I GGTCTC 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 886
Bsp143I GATC 3 cut(s) 209, 283, 312
BspACI CCGC 3 cut(s) 87, 255, 911
BspANI GGCC 2 cut(s) 104, 585
BspCNI CTCAG 2 cut(s) 502, 828
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 163, 314, 621
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 4 cut(s) 217, 278, 307, 320
BspTNI GGTCTC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 165, 873
BssMI GATC 3 cut(s) 209, 283, 312
BssNAI GTATAC 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 165, 873
Bst1107I GTATAC 1 cut(s) 906
Bst2UI CCWGG 1 cut(s) 866
Bst4CI ACNGT 3 cut(s) 75, 97, 773
BstC8I GCNNGC 2 cut(s) 150, 834
BstDEI CTNAG 3 cut(s) 223, 510, 815
BstF5I GGATG 2 cut(s) 41, 257
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 3 cut(s) 212, 286, 315
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 3 cut(s) 209, 283, 312
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 1 cut(s) 866
BstSCI CCNGG 2 cut(s) 568, 864
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 66, 505
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 2 cut(s) 209, 312
BstYI RGATCY 2 cut(s) 209, 312
BstZ17I GTATAC 1 cut(s) 906
BsuI GTATCC 2 cut(s) 392, 880
BsuRI GGCC 2 cut(s) 104, 585
BtsCI GGATG 2 cut(s) 41, 257
BtsIMutI CAGTG 2 cut(s) 93, 769
Cac8I GCNNGC 2 cut(s) 150, 834
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 3 cut(s) 19, 750, 785
CsiI ACCWGGT 1 cut(s) 864
Csp6I GTAC 1 cut(s) 293
CviAII CATG 1 cut(s) 60
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 3 cut(s) 223, 510, 815
DpnI GATC 3 cut(s) 211, 285, 314
DpnII GATC 3 cut(s) 209, 283, 312
DraI TTTAAA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 165, 873
Eco147I AGGCCT 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 864
EcoT14I CCWWGG 2 cut(s) 165, 873
ErhI CCWWGG 2 cut(s) 165, 873
FaeI CATG 1 cut(s) 63
FalI AAGNNNNNCTT 3 cut(s) 333, 365, 947
FaqI GGGAC 1 cut(s) 658
FatI CATG 1 cut(s) 59
FblI GTMKAC 1 cut(s) 905
Fnu4HI GCNGC 3 cut(s) 80, 88, 519
FokI GGATG 2 cut(s) 28, 244
Fsp4HI GCNGC 3 cut(s) 80, 88, 519
FspBI CTAG 3 cut(s) 713, 735, 914
GluI GCNGC 3 cut(s) 80, 88, 519
HaeIII GGCC 2 cut(s) 104, 585
HapII CCGG 3 cut(s) 36, 45, 569
HgaI GACGC 3 cut(s) 19, 750, 785
Hin1II CATG 1 cut(s) 63
HinfI GANTC 3 cut(s) 218, 344, 724
HpaII CCGG 3 cut(s) 36, 45, 569
HphI GGTGA 3 cut(s) 25, 37, 589
Hpy166II GTNNAC 3 cut(s) 360, 740, 906
Hpy188I TCNGA 1 cut(s) 778
Hpy188III TCNNGA 4 cut(s) 113, 298, 628, 824
Hpy8I GTNNAC 3 cut(s) 360, 740, 906
HpyAV CCTTC 4 cut(s) 10, 200, 738, 943
HpyCH4III ACNGT 3 cut(s) 75, 97, 773
HpyCH4V TGCA 6 cut(s) 82, 333, 423, 533, 704, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 3 cut(s) 223, 510, 815
Hsp92II CATG 1 cut(s) 63
Kzo9I GATC 3 cut(s) 209, 283, 312
LmnI GCTCC 4 cut(s) 8, 38, 161, 619
Lsp1109I GCAGC 2 cut(s) 66, 505
LweI GCATC 2 cut(s) 50, 266
MabI ACCWGGT 1 cut(s) 864
MaeI CTAG 3 cut(s) 713, 735, 914
MaeIII GTNAC 6 cut(s) 31, 47, 113, 556, 763, 919
MalI GATC 3 cut(s) 211, 285, 314
MboI GATC 3 cut(s) 209, 283, 312
MboII GAAGA 6 cut(s) 142, 215, 796, 812, 955, 967
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 209, 312
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 4 cut(s) 179, 546, 653, 789
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 3 cut(s) 115, 505, 597
MroXI GAANNNNTTC 4 cut(s) 174, 654, 959, 962
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 614
MspI CCGG 3 cut(s) 36, 45, 569
MspR9I CCNGG 2 cut(s) 570, 866
MunI CAATTG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 866
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 570
NdeII GATC 3 cut(s) 209, 283, 312
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 3 cut(s) 163, 314, 621
NmuCI GTSAC 3 cut(s) 31, 113, 919
OliI CACNNNNGTG 1 cut(s) 614
PceI AGGCCT 1 cut(s) 104
PdmI GAANNNNTTC 4 cut(s) 174, 654, 959, 962
PfeI GAWTC 3 cut(s) 218, 344, 724
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 3 cut(s) 81, 89, 520
Psp6I CCWGG 1 cut(s) 864
PspGI CCWGG 1 cut(s) 864
PspN4I GGNNCC 3 cut(s) 163, 314, 621
PspPI GGNCC 1 cut(s) 584
PstI CTGCAG 1 cut(s) 838
PsuI RGATCY 2 cut(s) 209, 312
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 614
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 3 cut(s) 80, 88, 519
Sau3AI GATC 3 cut(s) 209, 283, 312
Sau96I GGNCC 1 cut(s) 584
ScrFI CCNGG 2 cut(s) 570, 866
SduI GDGCHC 1 cut(s) 886
SetI ASST 8 cut(s) 21, 244, 294, 511, 520, 736, 850, 870
SexAI ACCWGGT 1 cut(s) 864
SfaNI GCATC 2 cut(s) 50, 266
SfcI CTRYAG 1 cut(s) 834
SmiMI CAYNNNNRTG 1 cut(s) 614
Sse9I AATT 4 cut(s) 179, 546, 653, 789
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 3 cut(s) 87, 255, 911
SspMI CTAG 3 cut(s) 713, 735, 914
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 568, 864
StyI CCWWGG 2 cut(s) 165, 873
TaaI ACNGT 3 cut(s) 75, 97, 773
TasI AATT 4 cut(s) 179, 546, 653, 789
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 3 cut(s) 218, 344, 724
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 2 cut(s) 100, 776
TseFI GTSAC 3 cut(s) 31, 113, 919
TseI GCWGC 2 cut(s) 79, 518
Tsp45I GTSAC 3 cut(s) 31, 113, 919
TspDTI ATGAA 2 cut(s) 48, 239
TspRI CASTG 2 cut(s) 100, 776
XapI RAATTY 2 cut(s) 653, 789
XmiI GTMKAC 1 cut(s) 905
XmnI GAANNNNTTC 4 cut(s) 174, 654, 959, 962
XspI CTAG 3 cut(s) 713, 735, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.