AT1G57800

an N-terminal PHD domain and two RING domains surrounding an SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000644
Physical Location & Seq
Reverse (-)
21408623 .. 21412283
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57800.2

Sequence Viewer

Length: 1983 bp
ATGACGCCTGCCACCCAGTACCCATGCGACCCCGAAGGTGTATGCATGCGATGCAAATCGATGCCTCCACCGGAGGAATCTCTCACTTGCGGCACGTGCGTCACGCCTTGGCACGTGTCCTGCCTTTTGTCCCCGCCCGAAACCCTAAGTGCTACTTTACAGTGGCTTTGTCCTGATTGCTCCGGTGAAACCAATCCTCTTCCTGTTTCCGGTGTTGCGGCTGGATATGGATCTGTTGGTTCAGATCTTGTAGCGGCGATCCACTCGATTGAGGCGGATGAAACTCTCTCTGCTGAAGAGAAGGCTAAGAAGAAGCAGCAGTTACTGAGTGGTAAGGGGGTCGTCGATGAGGATGACGAAGAAGAGAAGAAGAAGACGAGTAAAGGAAAGAAACCCATCGATGTGCTATCTCACTTCGAGTGTTCTTTCTGCATGCAGTCGCTACAAAAACCCGTCTCGGTTCGTGTACTCTTTGCTTTGGCTCTTATGCTTGTGTGGTTTCTCGAATCTACACCATGTGGGCACAACGCTTGCTTGAAATGTTTCTTGAAGTGGATGGGGCAGGGACACCGCAGTTGTGGAACATGCCGCAGCGTAATTCCTGAAAGCATGGTTACCAATCCCCGTATCAACTTGTCCATTGTGTCTGCTATTAGGTTAGCAAGAGTATCCGAAAAGGCTGATGCGCGTACTTCAAAAGTTGTTCACTATGTTGACAATGAAGATCGTCCAGATAAAGCATTTACAACTGAGCGCGCTAAGAAAACAGGGAATGCAAATGCTTCCAGTGGCAAGATTTTTGTTACAATCCCTCGAGATCATTTTGGTCCTATACCAGCTGAAAATGATCCTGTTAGGAACCAAGGTCTTTTGGTTGGAGAATCCTGGAAGGGCCGACTTGCTTGTCGGCAGTGGGGGGCTCACTTCCCACATGTTTCCGGCATTGCTGGACAAGCGAGTTATGGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGATGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAATTCTCAAAGGCAACAAAAGGACTAACACGGTTCAAGCTTTTGATCAAGTATTTCTAAACTTTAATGAAGCTTTAAGACTTAGTTGTAAACTAGGGTATCCTGTTCGAGTTGTCAGGTCTACCAAGGACAAGCGTTCTCCATACGCCCCTCAAGGAGGACTACTAAGGTATGATGGTGTTTACCGGATAGAGAAATGCTGGAGGATAGTTGGAATACAGATGTGCCGTTTCCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCTGAGCTTAATATGGCCACAGACCTGTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGATCGTTGGAGATGGATGAAGCCACCACCTGCTAGTAAAAAGGCAGTTAAAAATGTTTTGGATCCTGAGGAGAGGAAACTTTTGAGGGAAGCCATAAAGTCGGCAAACCCGAATACCATGAGGGCAAGACTTTTGAAAGAATTTAAGTGCCAGATCTGTCAGAAAGTGATGACTAATCCTGTGACAACGCCTTGTGCTCATAACTTCTGCAAGGCTTGTTTGGAATCGAAGTTTGCTGGGACAGCTCTAGTGAGAGAGAGAGGCAGCGGTGGACGAAAATTACGTTCACAAAAGAGTGTCATGAAGTGCCCTTGTTGCCCAACGGACATTGCCGAGTTTGTCCAGAACCCTCAGGTCAATAGAGAAGTAGCGGAGGTGATAGAGAAGCTGAAGAAACAGGAAGAGGAGGAAAACGCAAAGTCTTTAGATGAAGGTCAATGCTCAGGTACCAGCCATGAAGAAGAAGATGATGAGCAACCAAAGAAACGGATTAAGTTGGACACTGACGCAGAAGTTTCTGCGACTGTTGTGGAATCTGACATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-RING_UBOX

Protein Analysis

660

Amino Acids

73.36

Weight (kDa)

7.65

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 287 - 438 4.6e-43 SAD/SRA domain
zf-C3HC4_2 PF13923 531 - 557 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 532 - 561 1.5e-09 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1471
AasI GACNNNNNNGTC 1 cut(s) 903
Acc36I ACCTGC 1 cut(s) 1471
Acc65I GGTACC 1 cut(s) 1880
AccB1I GGYRCC 1 cut(s) 1880
AccI GTMKAC 1 cut(s) 1169
AccII CGCG 2 cut(s) 688, 756
AciI CCGC 9 cut(s) 90, 134, 218, 254, 275, 571, 589, 1701, 1805
AclWI GGATC 7 cut(s) 238, 253, 842, 1017, 1443, 1490, 1503
AcoI YGGCCR 1 cut(s) 1377
AcsI RAATTY 2 cut(s) 1050, 1574
AcuI CTGAAG 2 cut(s) 315, 1844
AcvI CACGTG 2 cut(s) 96, 115
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 4 cut(s) 20, 468, 691, 1882
AfiI CCNNNNNNNGG 2 cut(s) 209, 1205
AflIII ACRYGT 2 cut(s) 114, 931
AgsI TTSAA 5 cut(s) 538, 550, 696, 1085, 1570
AjnI CCWGG 1 cut(s) 884
AluBI AGCT 8 cut(s) 839, 968, 1088, 1121, 1310, 1369, 1679, 1822
AluI AGCT 8 cut(s) 839, 968, 1088, 1121, 1310, 1369, 1679, 1822
Alw21I GWGCWC 3 cut(s) 970, 984, 1633
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 7 cut(s) 238, 253, 842, 1017, 1443, 1490, 1503
AlwNI CAGNNNCTG 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 2 cut(s) 892, 1377
ApeKI GCWGC 3 cut(s) 316, 591, 1698
ApoI RAATTY 2 cut(s) 1050, 1574
Asp700I GAANNNNTTC 2 cut(s) 542, 1023
Asp718I GGTACC 1 cut(s) 1880
AspLEI GCGC 3 cut(s) 688, 756, 758
AspS9I GGNCC 3 cut(s) 827, 892, 1317
AsuHPI GGTGA 3 cut(s) 197, 1442, 1822
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 2 cut(s) 827, 1317
AxyI CCTNAGG 2 cut(s) 1500, 1785
BaeGI GKGCMC 2 cut(s) 525, 1745
BaeI ACNNNNGTAYC 2 cut(s) 1130, 1163
BalI TGGCCA 1 cut(s) 1379
BamHI GGATCC 1 cut(s) 1495
BanI GGYRCC 1 cut(s) 1880
BanII GRGCYC 2 cut(s) 922, 970
BbrPI CACGTG 2 cut(s) 96, 115
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 3 cut(s) 970, 984, 1633
BbvI GCAGC 3 cut(s) 328, 603, 1710
BccI CCATC 5 cut(s) 404, 550, 1217, 1417, 1440
BceAI ACGGC 1 cut(s) 1260
BcgI CGANNNNNNTGC 2 cut(s) 1319, 1353
BciT130I CCWGG 1 cut(s) 886
BciVI GTATCC 2 cut(s) 679, 1158
BclI TGATCA 1 cut(s) 1093
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 3 cut(s) 1142, 1467, 1682
BfuAI ACCTGC 1 cut(s) 1471
BfuI GTATCC 2 cut(s) 679, 1158
BglII AGATCT 2 cut(s) 244, 1587
BisI GCNGC 7 cut(s) 91, 219, 255, 317, 589, 592, 1699
BlsI GCNGC 7 cut(s) 92, 220, 256, 318, 590, 593, 1700
Bme1390I CCNGG 1 cut(s) 886
Bme18I GGWCC 2 cut(s) 827, 1317
BmeT110I CYCGRG 1 cut(s) 813
BmgT120I GGNCC 3 cut(s) 827, 892, 1317
BmiI GGNNCC 3 cut(s) 860, 1497, 1882
BmrFI CCNGG 1 cut(s) 886
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 3 cut(s) 41, 51, 673
BmuI ACTGGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 2 cut(s) 1008, 1270
Bpu10I CCTNAGC 2 cut(s) 1365, 1876
BpuEI CTTGAG 1 cut(s) 1185
Bsa29I ATCGAT 2 cut(s) 59, 399
BsaAI YACGTR 2 cut(s) 96, 115
BsaBI GATNNNNATC 3 cut(s) 55, 229, 1008
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 107, 862, 1173, 1313
BsaWI WCCGGW 4 cut(s) 70, 182, 209, 1233
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 1205
Bse1I ACTGG 3 cut(s) 16, 786, 1320
Bse21I CCTNAGG 2 cut(s) 1500, 1785
Bse3DI GCAATG 2 cut(s) 942, 1761
Bse8I GATNNNNATC 3 cut(s) 55, 229, 1008
BseBI CCWGG 1 cut(s) 886
BseCI ATCGAT 2 cut(s) 59, 399
BseDI CCNNGG 4 cut(s) 107, 862, 1173, 1313
BseGI GGATG 4 cut(s) 283, 358, 561, 1455
BseJI GATNNNNATC 3 cut(s) 55, 229, 1008
BseLI CCNNNNNNNGG 2 cut(s) 209, 1205
BseMI GCAATG 2 cut(s) 942, 1761
BseMII CTCAG 6 cut(s) 317, 741, 1356, 1491, 1799, 1890
BseNI ACTGG 3 cut(s) 16, 786, 1320
BsePI GCGCGC 1 cut(s) 754
BseRI GAGGAG 2 cut(s) 1517, 1853
BseSI GKGCMC 2 cut(s) 525, 1745
BseXI GCAGC 3 cut(s) 328, 603, 1710
BseYI CCCAGC 1 cut(s) 1670
Bsh1236I CGCG 2 cut(s) 688, 756
BshFI GGCC 2 cut(s) 894, 1379
BshNI GGYRCC 1 cut(s) 1880
BshVI ATCGAT 2 cut(s) 59, 399
BsiHKAI GWGCWC 3 cut(s) 970, 984, 1633
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 5 cut(s) 71, 183, 210, 939, 1234
BslFI GGGAC 3 cut(s) 115, 579, 1687
BslI CCNNNNNNNGG 2 cut(s) 209, 1205
BsmAI GTCTC 1 cut(s) 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 3 cut(s) 115, 579, 1687
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 2 cut(s) 894, 1379
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 6 cut(s) 525, 922, 970, 984, 1633, 1745
Bsp19I CCATGG 1 cut(s) 1313
BspACI CCGC 9 cut(s) 90, 134, 218, 254, 275, 571, 589, 1701, 1805
BspANI GGCC 2 cut(s) 894, 1379
BspCNI CTCAG 6 cut(s) 318, 742, 1357, 1492, 1798, 1889
BspDI ATCGAT 2 cut(s) 59, 399
BspFNI CGCG 2 cut(s) 688, 756
BspHI TCATGA 1 cut(s) 1734
BspLI GGNNCC 3 cut(s) 860, 1497, 1882
BspMI ACCTGC 1 cut(s) 1471
BspPI GGATC 7 cut(s) 238, 253, 842, 1017, 1443, 1490, 1503
BspT107I GGYRCC 1 cut(s) 1880
BsrDI GCAATG 2 cut(s) 942, 1761
BsrI ACTGG 3 cut(s) 16, 786, 1320
BssECI CCNNGG 4 cut(s) 107, 862, 1173, 1313
BssHII GCGCGC 1 cut(s) 754
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 107, 862, 1173, 1313
Bst2UI CCWGG 1 cut(s) 886
Bst4CI ACNGT 3 cut(s) 162, 1081, 1960
Bst6I CTCTTC 4 cut(s) 204, 291, 357, 1830
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 51
BstBAI YACGTR 2 cut(s) 96, 115
BstC8I GCNNGC 7 cut(s) 9, 47, 434, 532, 756, 984, 1308
BstDSI CCRYGG 1 cut(s) 1313
BstEII GGTNACC 1 cut(s) 613
BstENI CCTNNNNNAGG 1 cut(s) 1203
BstF5I GGATG 4 cut(s) 283, 358, 561, 1455
BstFNI CGCG 2 cut(s) 688, 756
BstHHI GCGC 3 cut(s) 688, 756, 758
BstMAI GTCTC 1 cut(s) 460
BstMWI GCNNNNNNNGC 5 cut(s) 51, 96, 953, 1676, 1749
BstNI CCWGG 1 cut(s) 886
BstNSI RCATGY 4 cut(s) 49, 436, 588, 935
BstPI GGTNACC 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 884
BstSLI GKGCMC 2 cut(s) 525, 1745
BstUI CGCG 2 cut(s) 688, 756
BstV1I GCAGC 3 cut(s) 328, 603, 1710
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 4 cut(s) 230, 244, 1495, 1587
BstXI CCANNNNNNTGG 1 cut(s) 1314
BstYI RGATCY 4 cut(s) 230, 244, 1495, 1587
Bsu15I ATCGAT 2 cut(s) 59, 399
Bsu36I CCTNAGG 2 cut(s) 1500, 1785
BsuI GTATCC 2 cut(s) 679, 1158
BsuRI GGCC 2 cut(s) 894, 1379
BsuTUI ATCGAT 2 cut(s) 59, 399
BtgI CCRYGG 1 cut(s) 1313
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 4 cut(s) 283, 358, 561, 1455
BtsI GCAGTG 1 cut(s) 917
BtsIMutI CAGTG 5 cut(s) 167, 793, 917, 1327, 1935
BveI ACCTGC 1 cut(s) 1471
Cac8I GCNNGC 7 cut(s) 9, 47, 434, 532, 756, 984, 1308
CaiI CAGNNNCTG 1 cut(s) 325
CciI TCATGA 1 cut(s) 1734
CfoI GCGC 3 cut(s) 688, 756, 758
Cfr13I GGNCC 3 cut(s) 827, 892, 1317
ClaI ATCGAT 2 cut(s) 59, 399
CseI GACGC 3 cut(s) 13, 88, 1949
Csp6I GTAC 4 cut(s) 19, 467, 690, 1881
CviQI GTAC 4 cut(s) 19, 467, 690, 1881
DraIII CACNNNGTG 1 cut(s) 518
DrdI GACNNNNNNGTC 1 cut(s) 903
DseDI GACNNNNNNGTC 1 cut(s) 903
EaeI YGGCCR 1 cut(s) 1377
Eam1104I CTCTTC 4 cut(s) 204, 291, 357, 1830
EarI CTCTTC 4 cut(s) 204, 291, 357, 1830
EciI GGCGGA 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 968
Eco130I CCWWGG 4 cut(s) 107, 862, 1173, 1313
Eco24I GRGCYC 2 cut(s) 922, 970
Eco47I GGWCC 2 cut(s) 827, 1317
Eco53kI GAGCTC 1 cut(s) 968
Eco57I CTGAAG 2 cut(s) 315, 1844
Eco72I CACGTG 2 cut(s) 96, 115
Eco81I CCTNAGG 2 cut(s) 1500, 1785
Eco88I CYCGRG 1 cut(s) 813
Eco91I GGTNACC 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 968
EcoNI CCTNNNNNAGG 1 cut(s) 1203
EcoO65I GGTNACC 1 cut(s) 613
EcoRI GAATTC 1 cut(s) 1050
EcoRII CCWGG 1 cut(s) 884
EcoT14I CCWWGG 4 cut(s) 107, 862, 1173, 1313
EcoT22I ATGCAT 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 922, 970
ErhI CCWWGG 4 cut(s) 107, 862, 1173, 1313
Esp3I CGTCTC 1 cut(s) 460
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FaqI GGGAC 3 cut(s) 115, 579, 1687
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 7 cut(s) 91, 219, 255, 317, 589, 592, 1699
FokI GGATG 4 cut(s) 290, 365, 568, 1462
FriOI GRGCYC 2 cut(s) 922, 970
Fsp4HI GCNGC 7 cut(s) 91, 219, 255, 317, 589, 592, 1699
FspBI CTAG 3 cut(s) 1142, 1467, 1682
GlaI GCGC 3 cut(s) 687, 755, 757
GluI GCNGC 7 cut(s) 91, 219, 255, 317, 589, 592, 1699
GsaI CCCAGC 1 cut(s) 1674
GsuI CTGGAG 2 cut(s) 1008, 1270
HaeIII GGCC 2 cut(s) 894, 1379
HapII CCGG 5 cut(s) 71, 183, 210, 939, 1234
HgaI GACGC 3 cut(s) 13, 88, 1949
HhaI GCGC 3 cut(s) 688, 756, 758
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 686, 754, 756
HinP1I GCGC 3 cut(s) 686, 754, 756
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 2 cut(s) 1086, 1119
HinfI GANTC 5 cut(s) 77, 506, 881, 1658, 1967
HpaII CCGG 5 cut(s) 71, 183, 210, 939, 1234
HphI GGTGA 3 cut(s) 197, 1442, 1822
Hpy166II GTNNAC 8 cut(s) 467, 706, 715, 1139, 1170, 1231, 1706, 1721
Hpy188I TCNGA 4 cut(s) 244, 673, 1596, 1972
Hpy8I GTNNAC 8 cut(s) 467, 706, 715, 1139, 1170, 1231, 1706, 1721
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 5 cut(s) 29, 295, 883, 1421, 1859
HpyCH4III ACNGT 3 cut(s) 162, 1081, 1960
HpyCH4IV ACGT 3 cut(s) 95, 114, 1717
HpyCH4V TGCA 6 cut(s) 45, 54, 432, 436, 776, 1644
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 96, 953, 1676, 1749
HpySE526I ACGT 3 cut(s) 95, 114, 1717
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 686, 754, 756
KpnI GGTACC 1 cut(s) 1884
Ksp22I TGATCA 1 cut(s) 1093
LmnI GCTCC 3 cut(s) 185, 965, 1315
Lsp1109I GCAGC 3 cut(s) 328, 603, 1710
LweI GCATC 3 cut(s) 41, 51, 673
MaeI CTAG 3 cut(s) 1142, 1467, 1682
MaeII ACGT 3 cut(s) 95, 114, 1717
MaeIII GTNAC 6 cut(s) 100, 321, 613, 802, 1295, 1615
MflI RGATCY 4 cut(s) 230, 244, 1495, 1587
MhlI GDGCHC 6 cut(s) 525, 922, 970, 984, 1633, 1745
MlsI TGGCCA 1 cut(s) 1379
MluCI AATT 4 cut(s) 597, 1050, 1574, 1712
MluNI TGGCCA 1 cut(s) 1379
MmeI TCCRAC 4 cut(s) 856, 1240, 1421, 1911
Mox20I TGGCCA 1 cut(s) 1379
Mph1103I ATGCAT 1 cut(s) 47
MroXI GAANNNNTTC 2 cut(s) 542, 1023
MscI TGGCCA 1 cut(s) 1379
MseI TTAA 6 cut(s) 1113, 1124, 1371, 1482, 1578, 1926
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 1379
MspA1I CMGCKG 2 cut(s) 839, 1701
MspI CCGG 5 cut(s) 71, 183, 210, 939, 1234
MspR9I CCNGG 1 cut(s) 886
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 1 cut(s) 886
MvnI CGCG 2 cut(s) 688, 756
MwoI GCNNNNNNNGC 5 cut(s) 51, 96, 953, 1676, 1749
NcoI CCATGG 1 cut(s) 1313
NlaIV GGNNCC 3 cut(s) 860, 1497, 1882
NmeAIII GCCGAG 1 cut(s) 1792
NmuCI GTSAC 3 cut(s) 100, 1295, 1615
NsiI ATGCAT 1 cut(s) 47
NspI RCATGY 4 cut(s) 49, 436, 588, 935
PaeI GCATGC 2 cut(s) 49, 436
PaeR7I CTCGAG 1 cut(s) 813
PagI TCATGA 1 cut(s) 1734
PaqCI CACCTGC 1 cut(s) 1471
PauI GCGCGC 1 cut(s) 754
PciI ACATGT 1 cut(s) 931
PcsI WCGNNNNNNNCGW 2 cut(s) 1541, 1714
PctI GAATGC 1 cut(s) 778
PdmI GAANNNNTTC 2 cut(s) 542, 1023
PfeI GAWTC 5 cut(s) 77, 506, 881, 1658, 1967
PfoI TCCNGGA 1 cut(s) 884
PkrI GCNGC 7 cut(s) 92, 220, 256, 318, 590, 593, 1700
PmaCI CACGTG 2 cut(s) 96, 115
PmlI CACGTG 2 cut(s) 96, 115
Ppu21I YACGTR 2 cut(s) 96, 115
PscI ACATGT 1 cut(s) 931
Psp124BI GAGCTC 1 cut(s) 970
Psp6I CCWGG 1 cut(s) 884
PspCI CACGTG 2 cut(s) 96, 115
PspEI GGTNACC 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 1670
PspGI CCWGG 1 cut(s) 884
PspN4I GGNNCC 3 cut(s) 860, 1497, 1882
PspPI GGNCC 3 cut(s) 827, 892, 1317
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 4 cut(s) 230, 244, 1495, 1587
PteI GCGCGC 1 cut(s) 754
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 4 cut(s) 20, 468, 691, 1882
RsaNI GTAC 4 cut(s) 19, 467, 690, 1881
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 970
SaqAI TTAA 6 cut(s) 1113, 1124, 1371, 1482, 1578, 1926
SatI GCNGC 7 cut(s) 91, 219, 255, 317, 589, 592, 1699
Sau96I GGNCC 3 cut(s) 827, 892, 1317
ScrFI CCNGG 1 cut(s) 886
SduI GDGCHC 6 cut(s) 525, 922, 970, 984, 1633, 1745
SfaNI GCATC 3 cut(s) 41, 51, 673
Sfr274I CTCGAG 1 cut(s) 813
SinI GGWCC 2 cut(s) 827, 1317
SlaI CTCGAG 1 cut(s) 813
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 813, 1200
SmoI CTYRAG 2 cut(s) 813, 1200
SphI GCATGC 2 cut(s) 49, 436
Sse9I AATT 4 cut(s) 597, 1050, 1574, 1712
SsiI CCGC 9 cut(s) 90, 134, 218, 254, 275, 571, 589, 1701, 1805
SspMI CTAG 3 cut(s) 1142, 1467, 1682
SstI GAGCTC 1 cut(s) 970
StyD4I CCNGG 1 cut(s) 884
StyI CCWWGG 4 cut(s) 107, 862, 1173, 1313
TaaI ACNGT 3 cut(s) 162, 1081, 1960
TaiI ACGT 3 cut(s) 98, 117, 1720
TaqI TCGA 9 cut(s) 59, 266, 345, 399, 417, 504, 814, 1156, 1661
TasI AATT 4 cut(s) 597, 1050, 1574, 1712
TatI WGTACW 1 cut(s) 466
TauI GCSGC 4 cut(s) 93, 221, 257, 591
TfiI GAWTC 5 cut(s) 77, 506, 881, 1658, 1967
Tru1I TTAA 6 cut(s) 1113, 1124, 1371, 1482, 1578, 1926
Tru9I TTAA 6 cut(s) 1113, 1124, 1371, 1482, 1578, 1926
TscAI CASTG 5 cut(s) 167, 793, 917, 1327, 1942
TseFI GTSAC 3 cut(s) 100, 1295, 1615
TseI GCWGC 3 cut(s) 316, 591, 1698
Tsp45I GTSAC 3 cut(s) 100, 1295, 1615
TspDTI ATGAA 8 cut(s) 294, 735, 1131, 1440, 1466, 1751, 1878, 1905
TspGWI ACGGA 2 cut(s) 1772, 1936
TspRI CASTG 5 cut(s) 167, 793, 917, 1327, 1942
VpaK11BI GGWCC 2 cut(s) 827, 1317
XagI CCTNNNNNAGG 1 cut(s) 1203
XapI RAATTY 2 cut(s) 1050, 1574
XceI RCATGY 4 cut(s) 49, 436, 588, 935
XhoI CTCGAG 1 cut(s) 813
XmiI GTMKAC 1 cut(s) 1169
XmnI GAANNNNTTC 2 cut(s) 542, 1023
XspI CTAG 3 cut(s) 1142, 1467, 1682
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.