Rh4BG292300

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000644
Physical Location & Seq
Forward (+)
46435762 .. 46439861
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG292300.1

Sequence Viewer

Length: 1560 bp
ATGGCTGACGTCTCCGTCTCCGTCTCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAAGCAGATGCCGTCGCCGGAGGAGATTCTCCCCTGCAACACATGCACCTCCCCCTGGCACGTCTCCTGTCTCTCTGTCCGTCCCGATACTGTGGCCGAGGCTTTGGACTGGGAGTGTCCGGACTGTGCTCCGGCGGCCGATTCCGAGCAGGCTGATGTGAATTCTGTCGGCGCCAGAGGTGACGGAGGCGGCGACGACGGTCTCATCGCCGCTATCAAAGCCCTGGAGGCCGACGAGTCATTGACGGAGAGAGAAAAGGCCAGGAAACGACAGGCGTTGATGTCCAAAACCGCATTGCTGCCGTCCGATAGCGATGGCGCAGATTCCGAGAAAAAGATGAACGGTGGTAATGACGCAGTACTCCTACGGAGCTTTTGCTGCACGATTTGCATGCATCTTCCTGAGAGACCTGTTACGACACCTTGCGGTCACAATTTCTGCCTGAAATGCTACGACAGATACGTAGCACAAGGAAAACGACAATGTGCAAATTGCCGCCAACCGATTCCATCGTCTCTGAGAATCAACGAGGTTCTTGTGAGGGCGATTCGTAGAGCGAACGTAGACAAACGCGCCACCGCAGGCGACGGCCAACGCCCCGTGGCGCATTACCTTCACAACCAGGACCGTCCGGACAAAGCATTCAGAAGCGAGCGAGCGAAGAAGGCTGGAAATGCTAATGCATCGAGTGGAAGAATATTTGTTACTACCGCTAAGGACCATTTTGGTCCCATAACGGCCGAGTATGACCCGGAGAGGAATGAGGGTGTGTTGGTGGGGAGGACTTGGCAGTATAGGATGGAATGCAGGCAATGGGGGATTCATCGCTCTGTGGTTGCAGGGATTTCGGGGCAGAGTAGGCATGGTGCTCAGTCGGTAGTTTTGTCCGGAGGATATGAAGACGACGAGGACCACGGCGAGTGGTTCATTTATACCGGAAGTGGTGGAAAAGATTTAAGTGGAAATAAACGGACGAACAAGGAACACAGTAAAGACCAGGAGTTTACGCACATGAATGAAGCGCTGAGGTTAAGTTGCAGAATGGGTTATCCAGTGCGAGTAGTGAGATCCCACAAAGAGAAGCGGTCTTCATATGCGCCTAGAGAAGCAGTGGTGCGATACGATGGGATTTACAGAATTGAAAAATGTTGGCGAAAGAAAGGAACGCAGGGATTTAAGGTATGCAGATACCTTTTCGTGAGATGTGATAACGAACCTGCTCCTTGGACATGTGATGTTCATGGGGACCGTCCAAGGCCTCTGCCATTTATAAAGGAGTTGAAAAAGGCAACCGATATAACAGAAAGAAAAGGATCTCCATCGTGGGACTACGATGAAGAAAAAGAGTGCTGGTTGTGGAAAAAGCCTCCACCACTTAGCAAGCAACCAGTGGAGGATAGTGGGGATGCAGAGGAGGGGAAGAAAGTAAAAGTGAAGAGAGCTCATCGGCAGAGACAGATTATGGAAGAAGAGATCCAGAGAGGTATAGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

519

Amino Acids

58.22

Weight (kDa)

8.42

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 147 - 191 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 148 - 186 1e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 148 - 186 3.9e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 275 - 425 1.3e-52 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1334
AasI GACNNNNNNGTC 1 cut(s) 14
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 1288
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 636
AccIII TCCGGA 3 cut(s) 181, 694, 950
AciI CCGC 9 cut(s) 197, 252, 273, 354, 489, 559, 642, 774, 1147
AclWI GGATC 3 cut(s) 1125, 1384, 1531
AcoI YGGCCR 4 cut(s) 156, 198, 652, 801
AcsI RAATTY 1 cut(s) 223
AcyI GRCGYC 2 cut(s) 9, 234
AfaI GTAC 1 cut(s) 423
AfeI AGCGCT 1 cut(s) 1086
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 1292
AgsI TTSAA 2 cut(s) 1205, 1345
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 5 cut(s) 116, 285, 323, 684, 1059
AluBI AGCT 2 cut(s) 435, 1505
AluI AGCT 2 cut(s) 435, 1505
Alw21I GWGCWC 3 cut(s) 193, 934, 1507
Alw26I GTCTC 9 cut(s) 16, 22, 28, 130, 137, 269, 463, 582, 1510
AlwI GGATC 3 cut(s) 1125, 1384, 1531
Aor13HI TCCGGA 3 cut(s) 181, 694, 950
Aor51HI AGCGCT 1 cut(s) 1086
AoxI GGCC 7 cut(s) 156, 198, 291, 321, 652, 801, 1319
ApeKI GCWGC 2 cut(s) 361, 441
ApoI RAATTY 1 cut(s) 223
AspLEI GCGC 6 cut(s) 236, 383, 638, 670, 1087, 1162
AspS9I GGNCC 5 cut(s) 688, 781, 791, 973, 1309
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 5 cut(s) 688, 781, 791, 973, 1309
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 1507
BbsI GAAGAC 2 cut(s) 969, 1143
Bbv12I GWGCWC 3 cut(s) 193, 934, 1507
BbvCI CCTCAGC 1 cut(s) 1088
BbvI GCAGC 2 cut(s) 348, 428
BccI CCATC 5 cut(s) 371, 580, 856, 1181, 1390
BceAI ACGGC 6 cut(s) 58, 61, 349, 667, 816, 994
BcgI CGANNNNNNTGC 4 cut(s) 436, 470, 891, 925
BciT130I CCWGG 5 cut(s) 118, 287, 325, 686, 1061
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 9 cut(s) 16, 22, 28, 130, 137, 269, 463, 582, 1510
BfaI CTAG 1 cut(s) 1164
BfoI RGCGCY 2 cut(s) 237, 1088
BfuAI ACCTGC 1 cut(s) 1288
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 6 cut(s) 198, 253, 273, 362, 442, 559
BlsI GCNGC 6 cut(s) 199, 254, 274, 363, 443, 560
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 6 cut(s) 118, 287, 325, 686, 815, 1061
Bme18I GGWCC 5 cut(s) 688, 781, 791, 973, 1309
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 5 cut(s) 688, 781, 791, 973, 1309
BmiI GGNNCC 3 cut(s) 235, 793, 1310
BmrFI CCNGG 6 cut(s) 118, 287, 325, 686, 815, 1061
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 4 cut(s) 60, 466, 755, 1459
BmuI ACTGGG 1 cut(s) 181
BoxI GACNNNNGTC 1 cut(s) 261
BpiI GAAGAC 2 cut(s) 969, 1143
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 2 cut(s) 777, 1088
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 1381
BsaHI GRCGYC 2 cut(s) 9, 234
BsaI GGTCTC 2 cut(s) 269, 463
BsaJI CCNNGG 7 cut(s) 116, 159, 285, 663, 976, 1286, 1316
BsaWI WCCGGW 4 cut(s) 181, 694, 950, 998
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 3 cut(s) 176, 1115, 1451
Bse3DI GCAATG 2 cut(s) 356, 881
Bse8I GATNNNNATC 1 cut(s) 1381
BseAI TCCGGA 3 cut(s) 181, 694, 950
BseBI CCWGG 5 cut(s) 118, 287, 325, 686, 1061
BseDI CCNNGG 7 cut(s) 116, 159, 285, 663, 976, 1286, 1316
BseGI GGATG 2 cut(s) 867, 1474
BseJI GATNNNNATC 1 cut(s) 1381
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 2 cut(s) 356, 881
BseMII CTCAG 4 cut(s) 456, 572, 947, 1079
BseNI ACTGG 3 cut(s) 176, 1115, 1451
BseRI GAGGAG 2 cut(s) 98, 1490
BseX3I CGGCCG 2 cut(s) 198, 801
BseXI GCAGC 2 cut(s) 348, 428
BsgI GTGCAG 1 cut(s) 427
Bsh1236I CGCG 1 cut(s) 636
Bsh1285I CGRYCG 2 cut(s) 201, 804
BshFI GGCC 7 cut(s) 158, 200, 293, 323, 654, 803, 1321
BshNI GGYRCC 1 cut(s) 233
BsiEI CGRYCG 2 cut(s) 201, 804
BsiHKAI GWGCWC 3 cut(s) 193, 934, 1507
BsiSI CCGG 7 cut(s) 80, 182, 194, 695, 815, 951, 999
BslFI GGGAC 4 cut(s) 129, 777, 1322, 1403
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 9 cut(s) 16, 22, 28, 130, 137, 269, 463, 582, 1510
BsmBI CGTCTC 5 cut(s) 16, 22, 28, 130, 582
BsmFI GGGAC 4 cut(s) 129, 777, 1322, 1403
BsmI GAATGC 2 cut(s) 704, 872
BsnI GGCC 7 cut(s) 158, 200, 293, 323, 654, 803, 1321
Bso31I GGTCTC 2 cut(s) 269, 463
Bsp1286I GDGCHC 3 cut(s) 193, 934, 1507
Bsp13I TCCGGA 3 cut(s) 181, 694, 950
Bsp143I GATC 3 cut(s) 1130, 1376, 1536
BspACI CCGC 9 cut(s) 197, 252, 273, 354, 489, 559, 642, 774, 1147
BspANI GGCC 7 cut(s) 158, 200, 293, 323, 654, 803, 1321
BspCNI CTCAG 4 cut(s) 457, 573, 946, 1080
BspEI TCCGGA 3 cut(s) 181, 694, 950
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 3 cut(s) 235, 793, 1310
BspMI ACCTGC 1 cut(s) 1288
BspPI GGATC 3 cut(s) 1125, 1384, 1531
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 2 cut(s) 269, 463
BsrDI GCAATG 2 cut(s) 356, 881
BsrI ACTGG 3 cut(s) 176, 1115, 1451
BssECI CCNNGG 7 cut(s) 116, 159, 285, 663, 976, 1286, 1316
BssMI GATC 3 cut(s) 1130, 1376, 1536
BssNI GRCGYC 2 cut(s) 9, 234
BssT1I CCWWGG 2 cut(s) 1286, 1316
Bst2UI CCWGG 5 cut(s) 118, 287, 325, 686, 1061
Bst4CI ACNGT 7 cut(s) 154, 188, 263, 407, 692, 1052, 1313
Bst6I CTCTTC 2 cut(s) 1493, 1527
BstACI GRCGYC 2 cut(s) 9, 234
BstAPI GCANNNNNTGC 3 cut(s) 60, 105, 450
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 8 cut(s) 65, 213, 455, 646, 716, 720, 872, 1445
BstDEI CTNAG 6 cut(s) 465, 581, 777, 933, 1088, 1439
BstDSI CCRYGG 2 cut(s) 663, 976
BstF5I GGATG 2 cut(s) 867, 1474
BstFNI CGCG 1 cut(s) 636
BstH2I RGCGCY 2 cut(s) 237, 1088
BstHHI GCGC 6 cut(s) 236, 383, 638, 670, 1087, 1162
BstKTI GATC 3 cut(s) 1133, 1379, 1539
BstMAI GTCTC 9 cut(s) 16, 22, 28, 130, 137, 269, 463, 582, 1510
BstMBI GATC 3 cut(s) 1130, 1376, 1536
BstMCI CGRYCG 2 cut(s) 201, 804
BstNI CCWGG 5 cut(s) 118, 287, 325, 686, 1061
BstNSI RCATGY 3 cut(s) 108, 457, 1296
BstPAI GACNNNNGTC 1 cut(s) 261
BstSCI CCNGG 6 cut(s) 116, 285, 323, 684, 813, 1059
BstSNI TACGTA 1 cut(s) 526
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 2 cut(s) 348, 428
BstV2I GAAGAC 2 cut(s) 969, 1143
BstX2I RGATCY 3 cut(s) 1130, 1376, 1536
BstYI RGATCY 3 cut(s) 1130, 1376, 1536
BstZI CGGCCG 2 cut(s) 198, 801
BsuRI GGCC 7 cut(s) 158, 200, 293, 323, 654, 803, 1321
BtgI CCRYGG 2 cut(s) 663, 976
BtgZI GCGATG 3 cut(s) 253, 390, 872
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 867, 1474
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 3 cut(s) 1122, 1179, 1458
BveI ACCTGC 1 cut(s) 1288
Cac8I GCNNGC 8 cut(s) 65, 213, 455, 646, 716, 720, 872, 1445
CfoI GCGC 6 cut(s) 236, 383, 638, 670, 1087, 1162
Cfr13I GGNCC 5 cut(s) 688, 781, 791, 973, 1309
CseI GACGC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 422
CviAII CATG 7 cut(s) 55, 105, 454, 926, 1075, 1293, 1304
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 6 cut(s) 465, 581, 777, 933, 1088, 1439
DinI GGCGCC 1 cut(s) 235
DpnI GATC 3 cut(s) 1132, 1378, 1538
DpnII GATC 3 cut(s) 1130, 1376, 1536
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 4 cut(s) 156, 198, 652, 801
EagI CGGCCG 2 cut(s) 198, 801
Eam1104I CTCTTC 2 cut(s) 1493, 1527
EarI CTCTTC 2 cut(s) 1493, 1527
Ecl136II GAGCTC 1 cut(s) 1505
EclXI CGGCCG 2 cut(s) 198, 801
Eco105I TACGTA 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 1286, 1316
Eco147I AGGCCT 1 cut(s) 1321
Eco24I GRGCYC 1 cut(s) 1507
Eco31I GGTCTC 2 cut(s) 269, 463
Eco47I GGWCC 5 cut(s) 688, 781, 791, 973, 1309
Eco47III AGCGCT 1 cut(s) 1086
Eco52I CGGCCG 2 cut(s) 198, 801
Eco53kI GAGCTC 1 cut(s) 1505
EcoICRI GAGCTC 1 cut(s) 1505
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 5 cut(s) 116, 285, 323, 684, 1059
EcoT14I CCWWGG 2 cut(s) 1286, 1316
EcoT22I ATGCAT 2 cut(s) 459, 748
EcoT38I GRGCYC 1 cut(s) 1507
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 1286, 1316
Esp3I CGTCTC 5 cut(s) 16, 22, 28, 130, 582
FaeI CATG 7 cut(s) 58, 108, 457, 929, 1078, 1296, 1307
FaqI GGGAC 4 cut(s) 129, 777, 1322, 1403
FatI CATG 7 cut(s) 54, 104, 453, 925, 1074, 1292, 1303
FauNDI CATATG 1 cut(s) 1156
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 6 cut(s) 198, 253, 273, 362, 442, 559
FokI GGATG 2 cut(s) 874, 1481
FriOI GRGCYC 1 cut(s) 1507
Fsp4HI GCNGC 6 cut(s) 198, 253, 273, 362, 442, 559
FspBI CTAG 1 cut(s) 1164
GlaI GCGC 6 cut(s) 235, 382, 637, 669, 1086, 1161
GluI GCNGC 6 cut(s) 198, 253, 273, 362, 442, 559
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 2 cut(s) 237, 1088
HaeIII GGCC 7 cut(s) 158, 200, 293, 323, 654, 803, 1321
HapII CCGG 7 cut(s) 80, 182, 194, 695, 815, 951, 999
HgaI GACGC 1 cut(s) 425
HhaI GCGC 6 cut(s) 236, 383, 638, 670, 1087, 1162
Hin1I GRCGYC 2 cut(s) 9, 234
Hin1II CATG 7 cut(s) 58, 108, 457, 929, 1078, 1296, 1307
Hin6I GCGC 6 cut(s) 234, 381, 636, 668, 1085, 1160
HinP1I GCGC 6 cut(s) 234, 381, 636, 668, 1085, 1160
HinfI GANTC 8 cut(s) 88, 203, 299, 386, 568, 585, 610, 883
HpaII CCGG 7 cut(s) 80, 182, 194, 695, 815, 951, 999
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 628, 1068
Hpy188I TCNGA 6 cut(s) 208, 370, 391, 582, 710, 1559
Hpy188III TCNNGA 7 cut(s) 146, 182, 464, 695, 951, 1261, 1540
Hpy8I GTNNAC 2 cut(s) 628, 1068
Hpy99I CGWCG 7 cut(s) 47, 79, 260, 263, 299, 653, 971
HpyAV CCTTC 2 cut(s) 686, 721
HpyCH4III ACNGT 7 cut(s) 154, 188, 263, 407, 692, 1052, 1313
HpyCH4IV ACGT 4 cut(s) 9, 123, 525, 624
HpyF3I CTNAG 6 cut(s) 465, 581, 777, 933, 1088, 1439
HpySE526I ACGT 4 cut(s) 9, 123, 525, 624
Hsp92I GRCGYC 2 cut(s) 9, 234
Hsp92II CATG 7 cut(s) 58, 108, 457, 929, 1078, 1296, 1307
HspAI GCGC 6 cut(s) 234, 381, 636, 668, 1085, 1160
KasI GGCGCC 1 cut(s) 233
Kpn2I TCCGGA 3 cut(s) 181, 694, 950
Kzo9I GATC 3 cut(s) 1130, 1376, 1536
LmnI GCTCC 3 cut(s) 196, 432, 1288
Lsp1109I GCAGC 2 cut(s) 348, 428
LweI GCATC 4 cut(s) 60, 466, 755, 1459
MaeI CTAG 1 cut(s) 1164
MaeII ACGT 4 cut(s) 9, 123, 525, 624
MaeIII GTNAC 4 cut(s) 242, 475, 491, 766
MalI GATC 3 cut(s) 1132, 1378, 1538
MboI GATC 3 cut(s) 1130, 1376, 1536
MflI RGATCY 3 cut(s) 1130, 1376, 1536
MhlI GDGCHC 3 cut(s) 193, 934, 1507
MluCI AATT 4 cut(s) 223, 496, 553, 1200
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 308
Mph1103I ATGCAT 2 cut(s) 459, 748
MroI TCCGGA 3 cut(s) 181, 694, 950
MseI TTAA 3 cut(s) 1019, 1094, 1239
MslI CAYNNNNRTG 2 cut(s) 53, 1077
MspI CCGG 7 cut(s) 80, 182, 194, 695, 815, 951, 999
MspR9I CCNGG 6 cut(s) 118, 287, 325, 686, 815, 1061
Mva1269I GAATGC 2 cut(s) 704, 872
MvaI CCWGG 5 cut(s) 118, 287, 325, 686, 1061
MvnI CGCG 1 cut(s) 636
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 1 cut(s) 815
NdeI CATATG 1 cut(s) 1156
NdeII GATC 3 cut(s) 1130, 1376, 1536
NlaIII CATG 7 cut(s) 58, 108, 457, 929, 1078, 1296, 1307
NlaIV GGNNCC 3 cut(s) 235, 793, 1310
NmeAIII GCCGAG 2 cut(s) 184, 829
NmuCI GTSAC 2 cut(s) 242, 491
NsiI ATGCAT 2 cut(s) 459, 748
NspI RCATGY 3 cut(s) 108, 457, 1296
PaeI GCATGC 1 cut(s) 457
PceI AGGCCT 1 cut(s) 1321
PciI ACATGT 1 cut(s) 1292
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 522
PctI GAATGC 2 cut(s) 704, 872
PfeI GAWTC 7 cut(s) 88, 203, 386, 568, 585, 610, 883
PkrI GCNGC 6 cut(s) 199, 254, 274, 363, 443, 560
PleI GAGTC 1 cut(s) 307
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 526
PscI ACATGT 1 cut(s) 1292
PshAI GACNNNNGTC 1 cut(s) 261
PsiI TTATAA 1 cut(s) 1334
Psp124BI GAGCTC 1 cut(s) 1507
Psp6I CCWGG 5 cut(s) 116, 285, 323, 684, 1059
PspGI CCWGG 5 cut(s) 116, 285, 323, 684, 1059
PspN4I GGNNCC 3 cut(s) 235, 793, 1310
PspPI GGNCC 5 cut(s) 688, 781, 791, 973, 1309
PsuI RGATCY 3 cut(s) 1130, 1376, 1536
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 2 cut(s) 53, 1077
SacI GAGCTC 1 cut(s) 1507
SaqAI TTAA 3 cut(s) 1019, 1094, 1239
SatI GCNGC 6 cut(s) 198, 253, 273, 362, 442, 559
Sau3AI GATC 3 cut(s) 1130, 1376, 1536
Sau96I GGNCC 5 cut(s) 688, 781, 791, 973, 1309
ScaI AGTACT 1 cut(s) 423
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 6 cut(s) 118, 287, 325, 686, 815, 1061
SduI GDGCHC 3 cut(s) 193, 934, 1507
SfaNI GCATC 4 cut(s) 60, 466, 755, 1459
SfoI GGCGCC 1 cut(s) 235
SinI GGWCC 5 cut(s) 688, 781, 791, 973, 1309
SmiMI CAYNNNNRTG 2 cut(s) 53, 1077
SnaBI TACGTA 1 cut(s) 526
SphI GCATGC 1 cut(s) 457
Sse9I AATT 4 cut(s) 223, 496, 553, 1200
SseBI AGGCCT 1 cut(s) 1321
SsiI CCGC 9 cut(s) 197, 252, 273, 354, 489, 559, 642, 774, 1147
SspDI GGCGCC 1 cut(s) 233
SspI AATATT 1 cut(s) 762
SspMI CTAG 1 cut(s) 1164
SstI GAGCTC 1 cut(s) 1507
StuI AGGCCT 1 cut(s) 1321
StyD4I CCNGG 6 cut(s) 116, 285, 323, 684, 813, 1059
StyI CCWWGG 2 cut(s) 1286, 1316
TaaI ACNGT 7 cut(s) 154, 188, 263, 407, 692, 1052, 1313
TaiI ACGT 4 cut(s) 12, 126, 528, 627
TaqI TCGA 1 cut(s) 749
TasI AATT 4 cut(s) 223, 496, 553, 1200
TatI WGTACW 1 cut(s) 421
TauI GCSGC 4 cut(s) 200, 255, 275, 561
TfiI GAWTC 7 cut(s) 88, 203, 386, 568, 585, 610, 883
Tru1I TTAA 3 cut(s) 1019, 1094, 1239
Tru9I TTAA 3 cut(s) 1019, 1094, 1239
TscAI CASTG 3 cut(s) 1122, 1179, 1458
TseFI GTSAC 2 cut(s) 242, 491
TseI GCWGC 2 cut(s) 361, 441
Tsp45I GTSAC 2 cut(s) 242, 491
TspDTI ATGAA 9 cut(s) 416, 875, 975, 979, 1091, 1095, 1143, 1292, 1413
TspGWI ACGGA 8 cut(s) 4, 10, 16, 131, 261, 323, 445, 1048
TspRI CASTG 3 cut(s) 1122, 1179, 1458
VpaK11BI GGWCC 5 cut(s) 688, 781, 791, 973, 1309
XapI RAATTY 1 cut(s) 223
XceI RCATGY 3 cut(s) 108, 457, 1296
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 1164
ZraI GACGTC 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 423
Zsp2I ATGCAT 2 cut(s) 459, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.