Rroxscaffold_5G00370540

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000644
Physical Location & Seq
Forward (+)
52245072 .. 52248824
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370540.1

Sequence Viewer

Length: 2079 bp
ATGGCCGACGTCTCCGTCTCCGTCTCCGTCTCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAAGCAGATGCCGTCGCCGGAGGAGATTCTCCCCTGCAACACTTGCACCTCCCCCTGGCACGTGTCCTGTCTCTCTGTCCGTCCCGATACTGTGGCCGAGGCTCTGGACTGGGAGTGTCCGGACTGTGCTCCGGCGGCCGATTCCGAGCAGGCTGCTGTGAATTCTGTCGGCGCCAGAGGTGACGGAGGCGGCGACGACGTTCTCATCGCGGCTATCAAAGCCTTGGAGGCCGACGAGTCATTGACGGAGAGAGAAAAGGCCAGCAAACGACAGGCGTTGATGTCCAAAACCGCATTGCTGCCGTCCGATAGCGATGGCGCAGATTCCGAGAAAAAGATGAACGGTGGTAATGACGCACTCCTACGGAGCTTTTGCTGCACGATTTGCATGCATCTTCCTGAGAGACCTGTTACGACACCTTGCGGTCACAATTTCTGCCTGAAATGCTACGACAGATACGTAGCACAAGGAAAACGACAATGTGCAAATTGCCGCCAACCGATTCCATCGTCTCTGAGAATCAACGAGGTTCTTGTGAGGGCGATTCGTAGAGCGAACGTAGACAAACGCGCCACCGCAGGCGACGGCCAACGCCCCGTGGCGCATTACCTTCACAACCAGGACCGTCCGGACAAAGCATTCAGAAGCGAGCGAGCGAAGAAGGCTGGAAATGCTAATGCATCGAGTGGAAGAATATTTGTTACTACTGCTAAGGACCATTTTGGTCCCATAACGACCGAGTATGACCCGGAGAGGAATGAGGGTGTGTTGGTGGGGAGGACTTGGCAGTATAGGATGGAATGCAGGCAATGGGGGATTCATCGCTCTGTGGTTGCAGGGATTTCGGGGCAGAGTAGGCATGGTGCTCAGTCGGTAGTTTTGTCCGGAGGATATGAAGACGATGAGGACCACGGCGAGTGGTTCATTTATACCGGAAGTGGTGGAAAAGATTTAAGTGGAAATAAACGGACGAACAAGGAACACAGTAAAGACCAGGAGTTTACGCACATGAATGAAGCGCTGAGGTTAAGTTGCAGAATGGGTTATCCAGTGCGAGTAGTGAGATCCCACAAAGAGAAGCGGTCTTCATATGCGCCTAGAGAAGCAGTGGTGCGATACGATGGGATTTACAGAATTGAAAAATGTTGGCGAAAGAAAGGAACGCAGGGATTTAAGGTATGCAGATACCTTTTCATGAGATGTGATAACGAACCTGCTCCTTGGACATGTGATGTTCATGGGGACCGACCAAGGCCTCTGCCATTTATAAAGGAGTTGAAAAAGGCAACCGATATAACAGAAAGAAAAGGATCTCCATCGTGGGACTACGATGAAGAAAAAGAGTGCTGGTTGTGGAAAAAGCCTCCACCACTTAGCAAGCAACCAGTGGAGGATAGTGGGGATGCAGCGGAGGGGAAGAAAGTAAAAGTGAAGAGAGCTTATCGGCAGAGACAGATTATGGAAGAAGAGATCCAGAGAGAGTTTGGCTGTCATATATGTCATAAGGTTTTGACCTCCCCTGTTACAACACCATGCGCTCACAACTTCTGCAAAGCATGCTTAGAAGGTGCCTTTGCTGGTTTGACTTTTATAAAAGAGAGGACATGCCATGGAAGAAGAACACTGAGACCACAAAAGAATGTCATGAATTGCCCGCTGTGTTCGACTGACATAGCTGAGTTTCTCCAAAATCTAAAGGTTAATACGGATCTCATGAATGCCATAAAAGACATGCAGCAGAAATTGGAAGATTTGGAAGAGGAAGAGGAAGCTGAAAAGGAAGTAGAAGATCAGGAACAGGAAGAAATTGACAATGACGGTAAAGAGACTCTGGATGAAGCCAAAGAAAGCATCTCCCCAGTACCCCAGACTGAAACTACACCGCAAGAAGCTTGTGAAGAAAAGAAACCAACTCGTAAGCGAAAGAAGTCAAACAATGCCGAAAATGCGGTGGATGCTGGGGTAACGGCCAGGAGGAGTAAGAAGAGTAAAATGGCAGTGGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

692

Amino Acids

77.57

Weight (kDa)

7.41

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 148 - 192 1.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 149 - 187 1.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 149 - 187 5.6e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 276 - 426 4.6e-52 SAD/SRA domain
zf-RING_UBOX PF13445 520 - 547 8.1e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1337, 1661
AasI GACNNNNNNGTC 1 cut(s) 14
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 1291
AccB1I GGYRCC 2 cut(s) 239, 1637
AccI GTMKAC 1 cut(s) 630
AccII CGCG 2 cut(s) 278, 639
AccIII TCCGGA 3 cut(s) 187, 697, 953
AclWI GGATC 4 cut(s) 1128, 1387, 1534, 1785
AcoI YGGCCR 5 cut(s) 3, 162, 204, 655, 2037
AcsI RAATTY 1 cut(s) 229
AcvI CACGTG 1 cut(s) 130
AcyI GRCGYC 2 cut(s) 9, 240
AfaI GTAC 1 cut(s) 1932
AfeI AGCGCT 1 cut(s) 1089
AfiI CCNNNNNNNGG 1 cut(s) 123
AflIII ACRYGT 2 cut(s) 129, 1295
AgsI TTSAA 2 cut(s) 1208, 1348
AjnI CCWGG 4 cut(s) 122, 687, 1062, 2039
AluBI AGCT 5 cut(s) 438, 1508, 1745, 1841, 1961
AluI AGCT 5 cut(s) 438, 1508, 1745, 1841, 1961
Alw21I GWGCWC 2 cut(s) 199, 937
AlwI GGATC 4 cut(s) 1128, 1387, 1534, 1785
Aor13HI TCCGGA 3 cut(s) 187, 697, 953
Aor51HI AGCGCT 1 cut(s) 1089
AoxI GGCC 8 cut(s) 3, 162, 204, 297, 327, 655, 1322, 2037
ApeKI GCWGC 5 cut(s) 221, 367, 444, 1475, 1804
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 7 cut(s) 242, 389, 641, 673, 1090, 1165, 1607
AspS9I GGNCC 5 cut(s) 691, 784, 794, 976, 1312
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 5 cut(s) 691, 784, 794, 976, 1312
BanI GGYRCC 2 cut(s) 239, 1637
BbrPI CACGTG 1 cut(s) 130
BbsI GAAGAC 2 cut(s) 972, 1146
Bbv12I GWGCWC 2 cut(s) 199, 937
BbvCI CCTCAGC 1 cut(s) 1091
BbvI GCAGC 5 cut(s) 208, 354, 431, 1487, 1816
BccI CCATC 5 cut(s) 377, 583, 859, 1184, 1393
BceAI ACGGC 6 cut(s) 64, 67, 355, 670, 997, 2052
BcgI CGANNNNNNTGC 6 cut(s) 203, 237, 439, 473, 894, 928
BciT130I CCWGG 4 cut(s) 124, 689, 1064, 2041
BcnI CCSGG 1 cut(s) 818
BfaI CTAG 1 cut(s) 1167
BfoI RGCGCY 2 cut(s) 243, 1091
BfuAI ACCTGC 1 cut(s) 1291
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 9 cut(s) 204, 222, 259, 279, 368, 445, 562, 1476, 1805
BlsI GCNGC 9 cut(s) 205, 223, 260, 280, 369, 446, 563, 1477, 1806
Bme1390I CCNGG 5 cut(s) 124, 689, 818, 1064, 2041
Bme18I GGWCC 5 cut(s) 691, 784, 794, 976, 1312
BmgT120I GGNCC 5 cut(s) 691, 784, 794, 976, 1312
BmiI GGNNCC 4 cut(s) 241, 796, 1313, 1639
BmrFI CCNGG 5 cut(s) 124, 689, 818, 1064, 2041
BmrI ACTGGG 2 cut(s) 187, 1922
BmsI GCATC 6 cut(s) 66, 469, 758, 1462, 1929, 2014
BmuI ACTGGG 2 cut(s) 187, 1922
BpiI GAAGAC 2 cut(s) 972, 1146
Bpu10I CCTNAGC 2 cut(s) 780, 1091
BpuMI CCSGG 1 cut(s) 818
BsaAI YACGTR 2 cut(s) 130, 529
BsaBI GATNNNNATC 1 cut(s) 1384
BsaHI GRCGYC 2 cut(s) 9, 240
BsaI GGTCTC 2 cut(s) 466, 1690
BsaJI CCNNGG 8 cut(s) 122, 165, 291, 666, 979, 1289, 1319, 1678
BsaWI WCCGGW 4 cut(s) 187, 697, 953, 1001
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 4 cut(s) 182, 1118, 1454, 1928
Bse3DI GCAATG 2 cut(s) 362, 884
Bse8I GATNNNNATC 1 cut(s) 1384
BseAI TCCGGA 3 cut(s) 187, 697, 953
BseBI CCWGG 4 cut(s) 124, 689, 1064, 2041
BseDI CCNNGG 8 cut(s) 122, 165, 291, 666, 979, 1289, 1319, 1678
BseGI GGATG 4 cut(s) 870, 1477, 1909, 2029
BseJI GATNNNNATC 1 cut(s) 1384
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 2 cut(s) 362, 884
BseMII CTCAG 6 cut(s) 459, 575, 950, 1082, 1685, 1737
BseNI ACTGG 4 cut(s) 182, 1118, 1454, 1928
BseRI GAGGAG 2 cut(s) 104, 2059
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 5 cut(s) 208, 354, 431, 1487, 1816
BseYI CCCAGC 1 cut(s) 2027
BsgI GTGCAG 1 cut(s) 430
Bsh1236I CGCG 2 cut(s) 278, 639
Bsh1285I CGRYCG 2 cut(s) 207, 807
BshFI GGCC 8 cut(s) 5, 164, 206, 299, 329, 657, 1324, 2039
BshNI GGYRCC 2 cut(s) 239, 1637
BsiEI CGRYCG 2 cut(s) 207, 807
BsiHKAI GWGCWC 2 cut(s) 199, 937
BsiSI CCGG 7 cut(s) 86, 188, 200, 698, 818, 954, 1002
BslFI GGGAC 4 cut(s) 135, 780, 1325, 1406
BslI CCNNNNNNNGG 1 cut(s) 123
BsmBI CGTCTC 5 cut(s) 16, 22, 28, 34, 585
BsmFI GGGAC 4 cut(s) 135, 780, 1325, 1406
BsmI GAATGC 3 cut(s) 707, 875, 1792
BsnI GGCC 8 cut(s) 5, 164, 206, 299, 329, 657, 1324, 2039
Bso31I GGTCTC 2 cut(s) 466, 1690
Bsp1286I GDGCHC 2 cut(s) 199, 937
Bsp13I TCCGGA 3 cut(s) 187, 697, 953
Bsp143I GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
Bsp19I CCATGG 1 cut(s) 1678
BspANI GGCC 8 cut(s) 5, 164, 206, 299, 329, 657, 1324, 2039
BspCNI CTCAG 6 cut(s) 460, 576, 949, 1083, 1686, 1738
BspEI TCCGGA 3 cut(s) 187, 697, 953
BspFNI CGCG 2 cut(s) 278, 639
BspHI TCATGA 3 cut(s) 1263, 1713, 1782
BspLI GGNNCC 4 cut(s) 241, 796, 1313, 1639
BspMI ACCTGC 1 cut(s) 1291
BspPI GGATC 4 cut(s) 1128, 1387, 1534, 1785
BspT107I GGYRCC 2 cut(s) 239, 1637
BspTNI GGTCTC 2 cut(s) 466, 1690
BsrDI GCAATG 2 cut(s) 362, 884
BsrI ACTGG 4 cut(s) 182, 1118, 1454, 1928
BssECI CCNNGG 8 cut(s) 122, 165, 291, 666, 979, 1289, 1319, 1678
BssMI GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
BssNI GRCGYC 2 cut(s) 9, 240
BssT1I CCWWGG 4 cut(s) 291, 1289, 1319, 1678
Bst2UI CCWGG 4 cut(s) 124, 689, 1064, 2041
Bst4CI ACNGT 6 cut(s) 160, 194, 413, 695, 1055, 1889
Bst6I CTCTTC 5 cut(s) 1496, 1530, 1821, 1827, 2048
BstACI GRCGYC 2 cut(s) 9, 240
BstAPI GCANNNNNTGC 4 cut(s) 66, 111, 453, 1626
BstBAI YACGTR 2 cut(s) 130, 529
BstDEI CTNAG 9 cut(s) 468, 584, 780, 936, 1091, 1442, 1630, 1694, 1746
BstDSI CCRYGG 3 cut(s) 666, 979, 1678
BstF5I GGATG 4 cut(s) 870, 1477, 1909, 2029
BstFNI CGCG 2 cut(s) 278, 639
BstH2I RGCGCY 2 cut(s) 243, 1091
BstHHI GCGC 7 cut(s) 242, 389, 641, 673, 1090, 1165, 1607
BstKTI GATC 5 cut(s) 1136, 1382, 1542, 1780, 1861
BstMBI GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
BstMCI CGRYCG 2 cut(s) 207, 807
BstNI CCWGG 4 cut(s) 124, 689, 1064, 2041
BstNSI RCATGY 5 cut(s) 460, 1299, 1629, 1677, 1804
BstSCI CCNGG 5 cut(s) 122, 687, 816, 1062, 2039
BstSNI TACGTA 1 cut(s) 529
BstUI CGCG 2 cut(s) 278, 639
BstV1I GCAGC 5 cut(s) 208, 354, 431, 1487, 1816
BstV2I GAAGAC 2 cut(s) 972, 1146
BstX2I RGATCY 4 cut(s) 1133, 1379, 1539, 1777
BstYI RGATCY 4 cut(s) 1133, 1379, 1539, 1777
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 8 cut(s) 5, 164, 206, 299, 329, 657, 1324, 2039
BtgI CCRYGG 3 cut(s) 666, 979, 1678
BtgZI GCGATG 3 cut(s) 259, 396, 875
BtsCI GGATG 4 cut(s) 870, 1477, 1909, 2029
BtsI GCAGTG 2 cut(s) 1182, 2073
BtsIMutI CAGTG 5 cut(s) 1125, 1182, 1461, 1691, 2073
BveI ACCTGC 1 cut(s) 1291
CciI TCATGA 3 cut(s) 1263, 1713, 1782
CfoI GCGC 7 cut(s) 242, 389, 641, 673, 1090, 1165, 1607
Cfr13I GGNCC 5 cut(s) 691, 784, 794, 976, 1312
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 1931
CviQI GTAC 1 cut(s) 1931
DdeI CTNAG 9 cut(s) 468, 584, 780, 936, 1091, 1442, 1630, 1694, 1746
DinI GGCGCC 1 cut(s) 241
DpnI GATC 5 cut(s) 1135, 1381, 1541, 1779, 1860
DpnII GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 5 cut(s) 3, 162, 204, 655, 2037
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 5 cut(s) 1496, 1530, 1821, 1827, 2048
EarI CTCTTC 5 cut(s) 1496, 1530, 1821, 1827, 2048
EclXI CGGCCG 1 cut(s) 204
Eco105I TACGTA 1 cut(s) 529
Eco130I CCWWGG 4 cut(s) 291, 1289, 1319, 1678
Eco147I AGGCCT 1 cut(s) 1324
Eco31I GGTCTC 2 cut(s) 466, 1690
Eco47I GGWCC 5 cut(s) 691, 784, 794, 976, 1312
Eco47III AGCGCT 1 cut(s) 1089
Eco52I CGGCCG 1 cut(s) 204
Eco72I CACGTG 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 4 cut(s) 122, 687, 1062, 2039
EcoT14I CCWWGG 4 cut(s) 291, 1289, 1319, 1678
EcoT22I ATGCAT 2 cut(s) 462, 751
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
ErhI CCWWGG 4 cut(s) 291, 1289, 1319, 1678
Esp3I CGTCTC 5 cut(s) 16, 22, 28, 34, 585
FaqI GGGAC 4 cut(s) 135, 780, 1325, 1406
FauI CCCGC 1 cut(s) 1731
FauNDI CATATG 1 cut(s) 1159
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 9 cut(s) 204, 222, 259, 279, 368, 445, 562, 1476, 1805
FokI GGATG 4 cut(s) 877, 1484, 1916, 2036
Fsp4HI GCNGC 9 cut(s) 204, 222, 259, 279, 368, 445, 562, 1476, 1805
FspBI CTAG 1 cut(s) 1167
GlaI GCGC 7 cut(s) 241, 388, 640, 672, 1089, 1164, 1606
GluI GCNGC 9 cut(s) 204, 222, 259, 279, 368, 445, 562, 1476, 1805
GsaI CCCAGC 1 cut(s) 2031
HaeII RGCGCY 2 cut(s) 243, 1091
HaeIII GGCC 8 cut(s) 5, 164, 206, 299, 329, 657, 1324, 2039
HapII CCGG 7 cut(s) 86, 188, 200, 698, 818, 954, 1002
HgaI GACGC 1 cut(s) 431
HhaI GCGC 7 cut(s) 242, 389, 641, 673, 1090, 1165, 1607
Hin1I GRCGYC 2 cut(s) 9, 240
Hin6I GCGC 7 cut(s) 240, 387, 639, 671, 1088, 1163, 1605
HinP1I GCGC 7 cut(s) 240, 387, 639, 671, 1088, 1163, 1605
HindIII AAGCTT 1 cut(s) 1959
HinfI GANTC 9 cut(s) 94, 209, 305, 392, 571, 588, 613, 886, 1897
HpaII CCGG 7 cut(s) 86, 188, 200, 698, 818, 954, 1002
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 631, 1071
Hpy188I TCNGA 6 cut(s) 214, 376, 397, 585, 713, 2078
Hpy8I GTNNAC 2 cut(s) 631, 1071
Hpy99I CGWCG 7 cut(s) 11, 53, 85, 266, 269, 305, 656
HpyAV CCTTC 3 cut(s) 689, 724, 1628
HpyCH4III ACNGT 6 cut(s) 160, 194, 413, 695, 1055, 1889
HpyCH4IV ACGT 5 cut(s) 9, 129, 267, 528, 627
HpyF3I CTNAG 9 cut(s) 468, 584, 780, 936, 1091, 1442, 1630, 1694, 1746
HpySE526I ACGT 5 cut(s) 9, 129, 267, 528, 627
Hsp92I GRCGYC 2 cut(s) 9, 240
HspAI GCGC 7 cut(s) 240, 387, 639, 671, 1088, 1163, 1605
KasI GGCGCC 1 cut(s) 239
Kpn2I TCCGGA 3 cut(s) 187, 697, 953
Kzo9I GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
LmnI GCTCC 3 cut(s) 202, 435, 1291
Lsp1109I GCAGC 5 cut(s) 208, 354, 431, 1487, 1816
LweI GCATC 6 cut(s) 66, 469, 758, 1462, 1929, 2014
MaeI CTAG 1 cut(s) 1167
MaeII ACGT 5 cut(s) 9, 129, 267, 528, 627
MaeIII GTNAC 6 cut(s) 248, 478, 494, 769, 1591, 2032
MalI GATC 5 cut(s) 1135, 1381, 1541, 1779, 1860
MboI GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
MflI RGATCY 4 cut(s) 1133, 1379, 1539, 1777
MhlI GDGCHC 2 cut(s) 199, 937
MluCI AATT 7 cut(s) 229, 499, 556, 1203, 1717, 1811, 1875
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 2 cut(s) 314, 1891
Mph1103I ATGCAT 2 cut(s) 462, 751
MroI TCCGGA 3 cut(s) 187, 697, 953
MseI TTAA 4 cut(s) 1022, 1097, 1242, 1770
MslI CAYNNNNRTG 2 cut(s) 59, 1080
MspA1I CMGCKG 2 cut(s) 1478, 1726
MspI CCGG 7 cut(s) 86, 188, 200, 698, 818, 954, 1002
MspR9I CCNGG 5 cut(s) 124, 689, 818, 1064, 2041
Mva1269I GAATGC 3 cut(s) 707, 875, 1792
MvaI CCWGG 4 cut(s) 124, 689, 1064, 2041
MvnI CGCG 2 cut(s) 278, 639
NarI GGCGCC 1 cut(s) 240
NciI CCSGG 1 cut(s) 818
NcoI CCATGG 1 cut(s) 1678
NdeI CATATG 1 cut(s) 1159
NdeII GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
NlaIV GGNNCC 4 cut(s) 241, 796, 1313, 1639
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 248, 494
NsiI ATGCAT 2 cut(s) 462, 751
NspI RCATGY 5 cut(s) 460, 1299, 1629, 1677, 1804
PaeI GCATGC 2 cut(s) 460, 1629
PagI TCATGA 3 cut(s) 1263, 1713, 1782
PceI AGGCCT 1 cut(s) 1324
PciI ACATGT 1 cut(s) 1295
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 525
PctI GAATGC 3 cut(s) 707, 875, 1792
PfeI GAWTC 7 cut(s) 94, 209, 392, 571, 588, 613, 886
PkrI GCNGC 9 cut(s) 205, 223, 260, 280, 369, 446, 563, 1477, 1806
PleI GAGTC 2 cut(s) 313, 1891
PluTI GGCGCC 1 cut(s) 243
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 2 cut(s) 313, 1891
Ppu21I YACGTR 2 cut(s) 130, 529
PscI ACATGT 1 cut(s) 1295
PsiI TTATAA 2 cut(s) 1337, 1661
Psp6I CCWGG 4 cut(s) 122, 687, 1062, 2039
PspCI CACGTG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 2027
PspGI CCWGG 4 cut(s) 122, 687, 1062, 2039
PspN4I GGNNCC 4 cut(s) 241, 796, 1313, 1639
PspPI GGNCC 5 cut(s) 691, 784, 794, 976, 1312
PsuI RGATCY 4 cut(s) 1133, 1379, 1539, 1777
RsaI GTAC 1 cut(s) 1932
RsaNI GTAC 1 cut(s) 1931
RseI CAYNNNNRTG 2 cut(s) 59, 1080
SaqAI TTAA 4 cut(s) 1022, 1097, 1242, 1770
SatI GCNGC 9 cut(s) 204, 222, 259, 279, 368, 445, 562, 1476, 1805
Sau3AI GATC 5 cut(s) 1133, 1379, 1539, 1777, 1858
Sau96I GGNCC 5 cut(s) 691, 784, 794, 976, 1312
SchI GAGTC 2 cut(s) 314, 1891
ScrFI CCNGG 5 cut(s) 124, 689, 818, 1064, 2041
SduI GDGCHC 2 cut(s) 199, 937
SfaNI GCATC 6 cut(s) 66, 469, 758, 1462, 1929, 2014
SfoI GGCGCC 1 cut(s) 241
SinI GGWCC 5 cut(s) 691, 784, 794, 976, 1312
SmiMI CAYNNNNRTG 2 cut(s) 59, 1080
SnaBI TACGTA 1 cut(s) 529
SphI GCATGC 2 cut(s) 460, 1629
Sse9I AATT 7 cut(s) 229, 499, 556, 1203, 1717, 1811, 1875
SseBI AGGCCT 1 cut(s) 1324
SspDI GGCGCC 1 cut(s) 239
SspI AATATT 1 cut(s) 765
SspMI CTAG 1 cut(s) 1167
StuI AGGCCT 1 cut(s) 1324
StyD4I CCNGG 5 cut(s) 122, 687, 816, 1062, 2039
StyI CCWWGG 4 cut(s) 291, 1289, 1319, 1678
TaaI ACNGT 6 cut(s) 160, 194, 413, 695, 1055, 1889
TaiI ACGT 5 cut(s) 12, 132, 270, 531, 630
TaqI TCGA 2 cut(s) 752, 1733
TaqII GACCGA 2 cut(s) 821, 1329
TasI AATT 7 cut(s) 229, 499, 556, 1203, 1717, 1811, 1875
TauI GCSGC 4 cut(s) 206, 261, 281, 564
TfiI GAWTC 7 cut(s) 94, 209, 392, 571, 588, 613, 886
Tru1I TTAA 4 cut(s) 1022, 1097, 1242, 1770
Tru9I TTAA 4 cut(s) 1022, 1097, 1242, 1770
TscAI CASTG 5 cut(s) 1125, 1182, 1461, 1698, 2073
TseFI GTSAC 2 cut(s) 248, 494
TseI GCWGC 5 cut(s) 221, 367, 444, 1475, 1804
Tsp45I GTSAC 2 cut(s) 248, 494
TspRI CASTG 5 cut(s) 1125, 1182, 1461, 1698, 2073
VpaK11BI GGWCC 5 cut(s) 691, 784, 794, 976, 1312
XapI RAATTY 1 cut(s) 229
XceI RCATGY 5 cut(s) 460, 1299, 1629, 1677, 1804
XcmI CCANNNNNNNNNTGG 1 cut(s) 1550
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 1 cut(s) 1167
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 2 cut(s) 462, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.