Rmu_co8001912.1_g000001

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8001912.1
OG0000644
Physical Location & Seq
Reverse (-)
1 .. 450
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8001912.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
ctgaaatgctacgacagatacgtagcacaaggaaaacgacaatgtgcaaattgccgccaaccgattccgtcgtctctgagaatcaacgaggttcttgtgagggcgattcgtagagcgaacgtagacaaacgcgccaccgcaggcgacggccaacgccccgtggcgcattacctccacaaccaggaccgcccggacaaagcattcagaagcgagcgagcgaagaaggctggaaatgccaatgcctcgagtggaagaatatttgttacgacggctaaggaccattttggtcccataacggccgagtatgacccagagaggaatgagggtgtgtcggtggggaggacttggcagtataggatggaatgcaggcaatgggggattcatcgctctgtggttgcagggatttcggggcagagtaggcatggggctcagtcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

10.28

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 55, 138, 187
AcoI YGGCCR 2 cut(s) 148, 297
AfiI CCNNNNNNNGG 1 cut(s) 181
AjnI CCWGG 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 2 cut(s) 148, 297
AspLEI GCGC 2 cut(s) 134, 166
AspS9I GGNCC 3 cut(s) 184, 277, 287
AsuC2I CCSGG 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 3 cut(s) 184, 277, 287
BanII GRGCYC 1 cut(s) 430
BccI CCATC 1 cut(s) 352
BceAI ACGGC 3 cut(s) 163, 285, 312
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 182, 191
Bme18I GGWCC 3 cut(s) 184, 277, 287
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 184, 277, 287
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 182, 191
Bpu10I CCTNAGC 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 150, 299
BsiEI CGRYCG 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 2 cut(s) 200, 368
BsnI GGCC 2 cut(s) 150, 299
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 430
BspACI CCGC 3 cut(s) 55, 138, 187
BspANI GGCC 2 cut(s) 150, 299
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 4 cut(s) 142, 212, 216, 368
BstDEI CTNAG 3 cut(s) 77, 273, 429
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 2 cut(s) 134, 166
BstMAI GTCTC 1 cut(s) 78
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 3 cut(s) 224, 233, 418
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 180, 189
BstSNI TACGTA 1 cut(s) 22
BstUI CGCG 1 cut(s) 132
BstZI CGGCCG 1 cut(s) 297
BsuRI GGCC 2 cut(s) 150, 299
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 1 cut(s) 363
Cac8I GCNNGC 4 cut(s) 142, 212, 216, 368
CfoI GCGC 2 cut(s) 134, 166
Cfr13I GGNCC 3 cut(s) 184, 277, 287
CviAII CATG 1 cut(s) 422
CviJI RGCY 5 cut(s) 150, 227, 272, 299, 428
CviKI_1 RGCY 5 cut(s) 150, 227, 272, 299, 428
DdeI CTNAG 3 cut(s) 77, 273, 429
EaeI YGGCCR 2 cut(s) 148, 297
EagI CGGCCG 1 cut(s) 297
EclXI CGGCCG 1 cut(s) 297
Eco105I TACGTA 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 3 cut(s) 184, 277, 287
Eco52I CGGCCG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 425
FaiI YATR 4 cut(s) 293, 306, 354, 423
FaqI GGGAC 1 cut(s) 273
FatI CATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 2 cut(s) 133, 165
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 2 cut(s) 150, 299
HapII CCGG 1 cut(s) 191
HhaI GCGC 2 cut(s) 134, 166
Hin1II CATG 1 cut(s) 425
Hin6I GCGC 2 cut(s) 132, 164
HinP1I GCGC 2 cut(s) 132, 164
HinfI GANTC 4 cut(s) 64, 81, 106, 379
HpaII CCGG 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 78, 206
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 3 cut(s) 73, 149, 271
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 21, 120
HpyCH4V TGCA 3 cut(s) 47, 366, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 233, 418
HpyF3I CTNAG 3 cut(s) 77, 273, 429
HpySE526I ACGT 2 cut(s) 21, 120
Hsp92II CATG 1 cut(s) 425
HspAI GCGC 2 cut(s) 132, 164
LpnPI CCDG 8 cut(s) 126, 167, 194, 204, 213, 324, 352, 384
MaeII ACGT 2 cut(s) 21, 120
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 2 cut(s) 232, 264
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 49
MnlI CCTC 7 cut(s) 82, 93, 182, 253, 309, 316, 333
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 182, 191
Mva1269I GAATGC 2 cut(s) 200, 368
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 224, 233, 418
NciI CCSGG 1 cut(s) 191
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 325
PaeR7I CTCGAG 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 2 cut(s) 200, 368
PfeI GAWTC 4 cut(s) 64, 81, 106, 379
PkrI GCNGC 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 3 cut(s) 184, 277, 287
PspXI VCTCGAGB 1 cut(s) 244
SatI GCNGC 1 cut(s) 55
Sau96I GGNCC 3 cut(s) 184, 277, 287
ScrFI CCNGG 2 cut(s) 182, 191
SduI GDGCHC 1 cut(s) 430
SetI ASST 4 cut(s) 24, 93, 123, 174
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 3 cut(s) 184, 277, 287
SlaI CTCGAG 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SnaBI TACGTA 1 cut(s) 22
Sse9I AATT 1 cut(s) 49
SsiI CCGC 3 cut(s) 55, 138, 187
SspI AATATT 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 180, 189
TaiI ACGT 2 cut(s) 24, 123
TaqI TCGA 1 cut(s) 245
TasI AATT 1 cut(s) 49
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 4 cut(s) 64, 81, 106, 379
TspDTI ATGAA 1 cut(s) 371
TspGWI ACGGA 1 cut(s) 57
VpaK11BI GGWCC 3 cut(s) 184, 277, 287
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.