AT5G39550

an N-terminal PHD domain and two RING domains surrounding an SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000644
Physical Location & Seq
Reverse (-)
15837178 .. 15840678
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39550.1

Sequence Viewer

Length: 1854 bp
ATGGCGATTGAAACTCAGCTTCCTTGCGACGGTGACGGTGTGTGTATGCGGTGTCAGGTGAATCCTCCGTCAGAAGAGACTCTCACTTGTGGCACGTGCGTCACTCCATGGCACGTGCCGTGTCTCCTCCCCGAATCACTCGCTTCTTCCACTGGAGAGTGGGAGTGTCCCGATTGCTCCGGCGTTGTCGTTCCCTCCGCCGCTCCGGGTACCGGAAACGCTCGACCTGAATCTTCCGGTTCAGTTCTCGTTGCTGCGATCCGTGCGATTCAGGCTGATGAGACTTTAACCGAAGCTGAGAAAGCCAAAAAAAGGCAGAAACTGATGAGTGGGGGTGGTGACGATGGTGTCGATGAAGAAGAGAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAAGCTAACTTGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCAAAAAATCCTCGCATCAACTTAGCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGTTCTGTTGAGGCAACTGCAGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCGGGCAGTAAAAACTGGGAAAGCTAATGCTGCTAGCGGTAAGTTTTTTGTGACAATACCTCGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTCACTAGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGCTCATTTCCCGCATATTGCTGGCATTGCCGGGCAATCAGCGGTTGGAGCTCAGTCTGTGGCCCTCTCTGGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGACCAGGCGTTTAAAAACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAGATATGATGGGGTCTATCGAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGCTGACCTGTTTGTGAGAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCTCCTCCTGTTAGCAGAATGGCTTTGGATCCTGAGGAGAGGAAGAAGAATAAGAGAGCAAAAAATACTATGAAGGCCAGACTTCTGAAAGAATTTAGTTGCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACTTCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCAATGGCGGACGTAAACTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCTGCACGACGGATCTCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGATGATGGAGATAATAGAGAATTTTAAGAAGAGTGAGGAAGAGGCTGATGCATCCATTTCTGAAGAAGAAGAAGAAGAATCCGAACCTCCAACTAAGAAGATTAAGATGGATAACAACTCTGTTGGTGGTAGTGGTACAAGTCTCTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-RING_UBOX

Protein Analysis

617

Amino Acids

68.3

Weight (kDa)

7.85

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 128 - 173 4.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 129 - 165 1.1e-06 RING-type zinc-finger
zf-C3HC4 PF00097 129 - 168 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 129 - 169 8.4e-07 Ring finger domain
zf-C3HC4_4 PF15227 129 - 168 1.7e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 259 - 410 2.2e-46 SAD/SRA domain
zf-RING_UBOX PF13445 495 - 527 5.2e-09 RING-type zinc-finger
zf-C3HC4_2 PF13923 495 - 520 1.7e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1678
AasI GACNNNNNNGTC 1 cut(s) 347
Acc36I ACCTGC 2 cut(s) 1649, 1678
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 2 cut(s) 203, 673
AccIII TCCGGA 1 cut(s) 1291
AclWI GGATC 6 cut(s) 253, 936, 978, 1406, 1419, 1668
AcsI RAATTY 3 cut(s) 513, 1475, 1720
AcuI CTGAAG 2 cut(s) 1143, 1782
AcvI CACGTG 2 cut(s) 96, 115
AcyI GRCGYC 1 cut(s) 1523
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 3 cut(s) 211, 1182, 1837
AfiI CCNNNNNNNGG 4 cut(s) 29, 212, 312, 1124
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 11, 401, 451
AjnI CCWGG 1 cut(s) 1014
Alw21I GWGCWC 3 cut(s) 841, 889, 1534
Alw26I GTCTC 7 cut(s) 71, 128, 275, 514, 1295, 1389, 1847
Alw44I GTGCAC 1 cut(s) 1530
AlwI GGATC 6 cut(s) 253, 936, 978, 1406, 1419, 1668
AlwNI CAGNNNCTG 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 1291
AoxI GGCC 2 cut(s) 897, 1458
ApaLI GTGCAC 1 cut(s) 1530
ApeKI GCWGC 5 cut(s) 254, 611, 701, 1307, 1650
ApoI RAATTY 3 cut(s) 513, 1475, 1720
Asp700I GAANNNNTTC 2 cut(s) 455, 942
Asp718I GGTACC 1 cut(s) 209
AspS9I GGNCC 3 cut(s) 746, 898, 1245
AsuC2I CCSGG 2 cut(s) 207, 868
AsuHPI GGTGA 5 cut(s) 44, 70, 350, 947, 1702
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 2 cut(s) 746, 1245
AxyI CCTNAGG 1 cut(s) 1416
BaeGI GKGCMC 2 cut(s) 438, 1534
BamHI GGATCC 1 cut(s) 1411
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 841, 889
BauI CACGAG 1 cut(s) 732
BbrPI CACGTG 2 cut(s) 96, 115
BbsI GAAGAC 1 cut(s) 1502
Bbv12I GWGCWC 3 cut(s) 841, 889, 1534
BbvCI CCTCAGC 1 cut(s) 1359
BbvI GCAGC 5 cut(s) 241, 623, 688, 1294, 1637
BccI CCATC 5 cut(s) 338, 1133, 1345, 1699, 1801
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 1247, 1281
BciT130I CCWGG 1 cut(s) 1016
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 2 cut(s) 207, 868
BcoDI GTCTC 7 cut(s) 71, 128, 275, 514, 1295, 1389, 1847
BfaI CTAG 3 cut(s) 557, 705, 774
BfmI CTRYAG 1 cut(s) 609
BfuAI ACCTGC 2 cut(s) 1649, 1678
BisI GCNGC 6 cut(s) 201, 255, 612, 702, 1308, 1651
BlsI GCNGC 6 cut(s) 202, 256, 613, 703, 1309, 1652
Bme1390I CCNGG 3 cut(s) 207, 868, 1016
Bme18I GGWCC 2 cut(s) 746, 1245
BmgT120I GGNCC 3 cut(s) 746, 898, 1245
BmiI GGNNCC 3 cut(s) 211, 748, 1413
BmrFI CCNGG 3 cut(s) 207, 868, 1016
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 3 cut(s) 552, 1738, 1760
BmtI GCTAGC 1 cut(s) 708
BmuI ACTGGG 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 1502
BpmI CTGGAG 3 cut(s) 174, 927, 1186
Bpu10I CCTNAGC 1 cut(s) 1359
BpuEI CTTGAG 1 cut(s) 1319
BpuMI CCSGG 2 cut(s) 207, 868
BsaAI YACGTR 3 cut(s) 96, 115, 1619
BsaBI GATNNNNATC 1 cut(s) 927
BsaHI GRCGYC 1 cut(s) 1523
BsaJI CCNNGG 3 cut(s) 107, 615, 1241
BsaWI WCCGGW 3 cut(s) 212, 236, 1291
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 212, 312, 1124
Bse1I ACTGG 4 cut(s) 157, 691, 1248, 1514
Bse21I CCTNAGG 1 cut(s) 1416
Bse3DI GCAATG 2 cut(s) 861, 1606
Bse8I GATNNNNATC 1 cut(s) 927
BseAI TCCGGA 1 cut(s) 1291
BseBI CCWGG 1 cut(s) 1016
BseDI CCNNGG 3 cut(s) 107, 615, 1241
BseGI GGATG 2 cut(s) 1383, 1751
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 4 cut(s) 29, 212, 312, 1124
BseMI GCAATG 2 cut(s) 861, 1606
BseNI ACTGG 4 cut(s) 157, 691, 1248, 1514
BseRI GAGGAG 3 cut(s) 116, 1377, 1433
BseSI GKGCMC 2 cut(s) 438, 1534
BseXI GCAGC 5 cut(s) 241, 623, 688, 1294, 1637
BseYI CCCAGC 1 cut(s) 1571
BsgI GTGCAG 1 cut(s) 1636
Bsh1285I CGRYCG 1 cut(s) 1267
BshFI GGCC 2 cut(s) 899, 1460
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 1267
BsiHKAI GWGCWC 3 cut(s) 841, 889, 1534
BsiSI CCGG 6 cut(s) 180, 206, 213, 237, 867, 1292
BslFI GGGAC 2 cut(s) 153, 732
BslI CCNNNNNNNGG 4 cut(s) 29, 212, 312, 1124
BsmAI GTCTC 7 cut(s) 71, 128, 275, 514, 1295, 1389, 1847
BsmFI GGGAC 2 cut(s) 153, 732
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 2 cut(s) 899, 1460
Bsp1286I GDGCHC 4 cut(s) 438, 841, 889, 1534
Bsp13I TCCGGA 1 cut(s) 1291
Bsp143I GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
Bsp19I CCATGG 2 cut(s) 107, 1241
BspANI GGCC 2 cut(s) 899, 1460
BspEI TCCGGA 1 cut(s) 1291
BspHI TCATGA 1 cut(s) 1635
BspLI GGNNCC 3 cut(s) 211, 748, 1413
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 2 cut(s) 1649, 1678
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 6 cut(s) 253, 936, 978, 1406, 1419, 1668
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 2 cut(s) 203, 673
BsrDI GCAATG 2 cut(s) 861, 1606
BsrI ACTGG 4 cut(s) 157, 691, 1248, 1514
BssECI CCNNGG 3 cut(s) 107, 615, 1241
BssMI GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
BssNI GRCGYC 1 cut(s) 1523
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 3 cut(s) 107, 615, 1241
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 1016
Bst4CI ACNGT 6 cut(s) 32, 38, 429, 647, 1005, 1278
Bst6I CTCTTC 4 cut(s) 69, 354, 1724, 1734
BstACI GRCGYC 1 cut(s) 1523
BstAPI GCANNNNNTGC 1 cut(s) 1551
BstBAI YACGTR 3 cut(s) 96, 115, 1619
BstC8I GCNNGC 5 cut(s) 675, 706, 859, 1236, 1552
BstDSI CCRYGG 2 cut(s) 107, 1241
BstENI CCTNNNNNAGG 1 cut(s) 1122
BstF5I GGATG 2 cut(s) 1383, 1751
BstKTI GATC 7 cut(s) 261, 739, 931, 973, 1267, 1414, 1663
BstMAI GTCTC 7 cut(s) 71, 128, 275, 514, 1295, 1389, 1847
BstMBI GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
BstMCI CGRYCG 1 cut(s) 1267
BstNI CCWGG 1 cut(s) 1016
BstNSI RCATGY 2 cut(s) 527, 1554
BstSCI CCNGG 3 cut(s) 205, 866, 1014
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 2 cut(s) 438, 1534
BstV1I GCAGC 5 cut(s) 241, 623, 688, 1294, 1637
BstV2I GAAGAC 1 cut(s) 1502
BstX2I RGATCY 3 cut(s) 970, 1411, 1660
BstXI CCANNNNNNTGG 1 cut(s) 1242
BstYI RGATCY 3 cut(s) 970, 1411, 1660
Bsu36I CCTNAGG 1 cut(s) 1416
BsuRI GGCC 2 cut(s) 899, 1460
BtgI CCRYGG 2 cut(s) 107, 1241
BtsCI GGATG 2 cut(s) 1383, 1751
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 5 cut(s) 150, 836, 982, 1255, 1521
BveI ACCTGC 2 cut(s) 1649, 1678
Cac8I GCNNGC 5 cut(s) 675, 706, 859, 1236, 1552
CaiI CAGNNNCTG 1 cut(s) 322
CciI TCATGA 1 cut(s) 1635
Cfr13I GGNCC 3 cut(s) 746, 898, 1245
CseI GACGC 2 cut(s) 88, 1531
Csp6I GTAC 3 cut(s) 210, 1181, 1836
CviAII CATG 9 cut(s) 108, 524, 932, 1030, 1242, 1259, 1341, 1551, 1636
CviQI GTAC 3 cut(s) 210, 1181, 1836
DpnI GATC 7 cut(s) 260, 738, 930, 972, 1266, 1413, 1662
DpnII GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
DraI TTTAAA 1 cut(s) 1024
DraIII CACNNNGTG 1 cut(s) 431
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
Eam1104I CTCTTC 4 cut(s) 69, 354, 1724, 1734
EarI CTCTTC 4 cut(s) 69, 354, 1724, 1734
EciI GGCGGA 2 cut(s) 187, 1620
Ecl136II GAGCTC 2 cut(s) 839, 887
Eco130I CCWWGG 3 cut(s) 107, 615, 1241
Eco24I GRGCYC 2 cut(s) 841, 889
Eco47I GGWCC 2 cut(s) 746, 1245
Eco53kI GAGCTC 2 cut(s) 839, 887
Eco57I CTGAAG 2 cut(s) 1143, 1782
Eco72I CACGTG 2 cut(s) 96, 115
Eco81I CCTNAGG 1 cut(s) 1416
EcoICRI GAGCTC 2 cut(s) 839, 887
EcoNI CCTNNNNNAGG 1 cut(s) 1122
EcoRII CCWGG 1 cut(s) 1014
EcoT14I CCWWGG 3 cut(s) 107, 615, 1241
EcoT22I ATGCAT 1 cut(s) 1753
EcoT38I GRGCYC 2 cut(s) 841, 889
ErhI CCWWGG 3 cut(s) 107, 615, 1241
FaeI CATG 9 cut(s) 111, 527, 935, 1033, 1245, 1262, 1344, 1554, 1639
FaqI GGGAC 2 cut(s) 153, 732
FatI CATG 9 cut(s) 107, 523, 931, 1029, 1241, 1258, 1340, 1550, 1635
FauI CCCGC 3 cut(s) 666, 855, 1692
FauNDI CATATG 1 cut(s) 1111
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 6 cut(s) 201, 255, 612, 702, 1308, 1651
FokI GGATG 2 cut(s) 1390, 1738
FriOI GRGCYC 2 cut(s) 841, 889
Fsp4HI GCNGC 6 cut(s) 201, 255, 612, 702, 1308, 1651
FspBI CTAG 3 cut(s) 557, 705, 774
GluI GCNGC 6 cut(s) 201, 255, 612, 702, 1308, 1651
GsaI CCCAGC 1 cut(s) 1575
GsuI CTGGAG 3 cut(s) 174, 927, 1186
HaeIII GGCC 2 cut(s) 899, 1460
HapII CCGG 6 cut(s) 180, 206, 213, 237, 867, 1292
HgaI GACGC 2 cut(s) 88, 1531
Hin1I GRCGYC 1 cut(s) 1523
Hin1II CATG 9 cut(s) 111, 527, 935, 1033, 1245, 1262, 1344, 1554, 1639
HpaII CCGG 6 cut(s) 180, 206, 213, 237, 867, 1292
HphI GGTGA 5 cut(s) 44, 70, 350, 947, 1702
Hpy166II GTNNAC 3 cut(s) 1532, 1613, 1693
Hpy188I TCNGA 8 cut(s) 73, 519, 1012, 1076, 1470, 1669, 1762, 1783
Hpy8I GTNNAC 3 cut(s) 1532, 1613, 1693
Hpy99I CGWCG 3 cut(s) 32, 1525, 1660
HpyAV CCTTC 4 cut(s) 960, 1087, 1118, 1450
HpyCH4III ACNGT 6 cut(s) 32, 38, 429, 647, 1005, 1278
HpyCH4IV ACGT 4 cut(s) 95, 114, 1609, 1618
HpyCH4V TGCA 9 cut(s) 396, 611, 1056, 1109, 1532, 1545, 1622, 1653, 1751
HpySE526I ACGT 4 cut(s) 95, 114, 1609, 1618
Hsp92I GRCGYC 1 cut(s) 1523
Hsp92II CATG 9 cut(s) 111, 527, 935, 1033, 1245, 1262, 1344, 1554, 1639
Kpn2I TCCGGA 1 cut(s) 1291
KpnI GGTACC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
LmnI GCTCC 6 cut(s) 182, 208, 836, 884, 1243, 1294
Lsp1109I GCAGC 5 cut(s) 241, 623, 688, 1294, 1637
LweI GCATC 3 cut(s) 552, 1738, 1760
MaeI CTAG 3 cut(s) 557, 705, 774
MaeII ACGT 4 cut(s) 95, 114, 1609, 1618
MaeIII GTNAC 9 cut(s) 32, 100, 338, 583, 721, 769, 1205, 1223, 1516
MalI GATC 7 cut(s) 260, 738, 930, 972, 1266, 1413, 1662
MbiI CCGCTC 2 cut(s) 203, 673
MboI GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
MfeI CAATTG 1 cut(s) 401
MflI RGATCY 3 cut(s) 970, 1411, 1660
MhlI GDGCHC 4 cut(s) 438, 841, 889, 1534
MluCI AATT 7 cut(s) 401, 439, 513, 990, 1152, 1475, 1720
MlyI GAGTC 3 cut(s) 73, 1342, 1516
MmeI TCCRAC 5 cut(s) 775, 862, 1156, 1349, 1814
Mph1103I ATGCAT 1 cut(s) 1753
MroI TCCGGA 1 cut(s) 1291
MroXI GAANNNNTTC 2 cut(s) 455, 942
MseI TTAA 7 cut(s) 287, 993, 1023, 1194, 1725, 1803, 1852
MspA1I CMGCKG 2 cut(s) 758, 878
MspI CCGG 6 cut(s) 180, 206, 213, 237, 867, 1292
MspR9I CCNGG 3 cut(s) 207, 868, 1016
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 1016
NciI CCSGG 2 cut(s) 207, 868
NcoI CCATGG 2 cut(s) 107, 1241
NdeI CATATG 1 cut(s) 1111
NdeII GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 9 cut(s) 111, 527, 935, 1033, 1245, 1262, 1344, 1554, 1639
NlaIV GGNNCC 3 cut(s) 211, 748, 1413
NmuCI GTSAC 7 cut(s) 32, 100, 338, 721, 769, 1223, 1516
NsiI ATGCAT 1 cut(s) 1753
NspI RCATGY 2 cut(s) 527, 1554
PaeI GCATGC 1 cut(s) 1554
PagI TCATGA 1 cut(s) 1635
PaqCI CACCTGC 1 cut(s) 1678
PciI ACATGT 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 348, 1615
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 2 cut(s) 455, 942
PfeI GAWTC 7 cut(s) 61, 134, 230, 268, 800, 1037, 1778
PkrI GCNGC 6 cut(s) 202, 256, 613, 703, 1309, 1652
Ple19I CGATCG 1 cut(s) 1267
PleI GAGTC 3 cut(s) 73, 1341, 1515
PmaCI CACGTG 2 cut(s) 96, 115
PmlI CACGTG 2 cut(s) 96, 115
PpsI GAGTC 3 cut(s) 73, 1341, 1515
Ppu21I YACGTR 3 cut(s) 96, 115, 1619
PscI ACATGT 1 cut(s) 523
Psp124BI GAGCTC 2 cut(s) 841, 889
Psp6I CCWGG 1 cut(s) 1014
PspCI CACGTG 2 cut(s) 96, 115
PspFI CCCAGC 1 cut(s) 1571
PspGI CCWGG 1 cut(s) 1014
PspN4I GGNNCC 3 cut(s) 211, 748, 1413
PspPI GGNCC 3 cut(s) 746, 898, 1245
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 322
PsuI RGATCY 3 cut(s) 970, 1411, 1660
PvuI CGATCG 1 cut(s) 1267
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 3 cut(s) 211, 1182, 1837
RsaNI GTAC 3 cut(s) 210, 1181, 1836
SacI GAGCTC 2 cut(s) 841, 889
SaqAI TTAA 7 cut(s) 287, 993, 1023, 1194, 1725, 1803, 1852
SatI GCNGC 6 cut(s) 201, 255, 612, 702, 1308, 1651
Sau3AI GATC 7 cut(s) 258, 736, 928, 970, 1264, 1411, 1660
Sau96I GGNCC 3 cut(s) 746, 898, 1245
SchI GAGTC 3 cut(s) 73, 1342, 1516
ScrFI CCNGG 3 cut(s) 207, 868, 1016
SduI GDGCHC 4 cut(s) 438, 841, 889, 1534
SfaNI GCATC 3 cut(s) 552, 1738, 1760
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 2 cut(s) 746, 1245
SmlI CTYRAG 1 cut(s) 1298
SmoI CTYRAG 1 cut(s) 1298
SphI GCATGC 1 cut(s) 1554
Sse9I AATT 7 cut(s) 401, 439, 513, 990, 1152, 1475, 1720
SspMI CTAG 3 cut(s) 557, 705, 774
SstI GAGCTC 2 cut(s) 841, 889
StyD4I CCNGG 3 cut(s) 205, 866, 1014
StyI CCWWGG 3 cut(s) 107, 615, 1241
TaaI ACNGT 6 cut(s) 32, 38, 429, 647, 1005, 1278
TaiI ACGT 4 cut(s) 98, 117, 1612, 1621
TaqI TCGA 5 cut(s) 223, 351, 459, 1150, 1350
TasI AATT 7 cut(s) 401, 439, 513, 990, 1152, 1475, 1720
TatI WGTACW 1 cut(s) 1180
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 7 cut(s) 61, 134, 230, 268, 800, 1037, 1778
Tru1I TTAA 7 cut(s) 287, 993, 1023, 1194, 1725, 1803, 1852
Tru9I TTAA 7 cut(s) 287, 993, 1023, 1194, 1725, 1803, 1852
TscAI CASTG 5 cut(s) 157, 836, 982, 1255, 1521
TseFI GTSAC 7 cut(s) 32, 100, 338, 721, 769, 1223, 1516
TseI GCWGC 5 cut(s) 254, 611, 701, 1307, 1650
Tsp45I GTSAC 7 cut(s) 32, 100, 338, 721, 769, 1223, 1516
TspDTI ATGAA 7 cut(s) 369, 611, 1046, 1050, 1368, 1394, 1469
TspGWI ACGGA 3 cut(s) 57, 251, 1673
TspRI CASTG 5 cut(s) 157, 836, 982, 1255, 1521
VneI GTGCAC 1 cut(s) 1530
VpaK11BI GGWCC 2 cut(s) 746, 1245
XagI CCTNNNNNAGG 1 cut(s) 1122
XapI RAATTY 3 cut(s) 513, 1475, 1720
XceI RCATGY 2 cut(s) 527, 1554
XmnI GAANNNNTTC 2 cut(s) 455, 942
XspI CTAG 3 cut(s) 557, 705, 774
Zsp2I ATGCAT 1 cut(s) 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.