Rmu_sc0001576.1_g000019

E3 ubiquitin-protein ligase ORTHRUS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001576.1
OG0000644
Physical Location & Seq
Forward (+)
80069 .. 84712
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001576.1_g000019.1.cds

Sequence Viewer

Length: 2280 bp
atggcgcacgttagccagctgccatgcgacggagacggcgtctgcatgctctgcaaaacgacgccgtcgcacgaggaccagctcacctgcaggacctgcgtcacgccgtggcacgtcagctgcctctcgtcccgtcccgaatcgctggcttccactctccagtgggagtgcccggactgttcctcgctctccggcgacacgccggccgtgaaatcggccgtctccggcgagctgatcgccgcgatccgggcgatcgaggcggatgcggcgctgacggagcagcagaaggcgagtaagcgacaggagctgatgagcgggaaggctctgccggaggaagaagaaggcgccggcaggaagggagtaaacgatggcgttttggatgggattttcaattgctcgttctgtatgcaactaccggagagacctgttacgacaccatgtggccacaatttctgcttgaagtgcttccagaaatgggttggacaagggaagcgtacttgtgcaaagtgccgccacgccattccttccaaaatggcaagtcaaccccgcatcaattcttcacttgtagttgccatacgtatggctaagatgtcaaaatcatatgttactgaggggcctgctaaggtataccactttgtccgaaaccaagacagacctgacaaagctttcactaccgagcgggcgcagaaaactgggaaatctaatgctgcaagtggcaagatatttgtcacaattccagctgatcattttggacctatacctgctgaatatgatcctgagagaaaccaaggtgtgctggtaggggaatgctgggaggataggcttgaatgtcgacagtggggtgcacactttccccatgttgctggtatagctggacagtctaaccatggtgcacagtcagttgtgctttcaggagggtaccttgatgatgaggatcatggagagtggttcttatacacaggaagtggtggaagggatttgagtgggaataagcgaacaaacaaggatcagtcatttgaccagacatttgagaaatataacaaggctctccaagttagttgcctgaaagggtatcctgtacgggtggtaagatcgcacaaggagaagcgctcttcatatgcccctgagaaagggttgcggtatgatggagtctatagaattgaaaaatgttggacaaaggtgggaatccaggggtttaaggtctgccggtatctttttgttagatgtgacaatgaacctgcaccatggacgagtgatgaacatggggaccggcctagacctttacctccaatacctgagctgaagaaagctacaagtataatagagaggaagtcaagtccatcgtgggactttgaggagaaagatggctgctggaagtggaaaaagtcaccacctatcagtaaaaaaaccgttcagacattagattctgctgatcgaaagaggtcaagaaaaggaaagaggaaggcaaaaaatattactgtccgagagaggctcttaagagaattcagctgccttgtttgcggggaggtcatgacattaccaatgaccacaccttgtgctcataacttttgcaaatcctgtttggaaggcgcttttgcaggaaagagcttggtgagagaaagaaacagagggggaagaacccttcgaacccaaaagaatataatgagctgcccttcttgtcctactgatatctctgattttcttcaagatcctcaggtgaatagagagttaatggatgcgattgagtcacttaagtcacagaatgaagaggaagagaatgaggattcagctgaagaaatcagtgaagatgtggataattctgacaacgaaattagcactgaaatggttgaagaagcaggtgttaacgaatgtgctgagggttctccaacaaactgcaatcccgaaaggagtcccaaacgacagaaagttgatgctggtgaaggctcagcaaaaaccaatgatgaggtggtaaattgcattcctgtcgcccagactaacggcaaaggctcaccggaaactgatactgaagaggtaaatgaaactcctgtcgcccagactaatggcaaaggctcaccggaaaccgatactgaagaggtaaatgaaactcctgtcgctcatactaatggcaaaggctcaccggctccagttgcaaaatgtggcaagcaagatgctggtccggttggcgttgcagcaaatactaggaggaaaaaggctgaagtagtgggtaaagataatggttccccatcaagtcctctgcttgtgcaatctgattttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005737 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008327 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010369 GO:0010385 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022607 GO:0031055 GO:0031323 GO:0031325 GO:0031326 GO:0031497 GO:0031507 GO:0031508 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032776 GO:0033043 GO:0033044 GO:0034508 GO:0034622 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051276 GO:0051301 GO:0060255 GO:0060968 GO:0061630 GO:0061659 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070647 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

759

Amino Acids

83.39

Weight (kDa)

6.48

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 95, 1847
Acc36I ACCTGC 5 cut(s) 95, 104, 769, 1246, 1847
Acc65I GGTACC 1 cut(s) 918
AccB1I GGYRCC 2 cut(s) 344, 918
AccBSI CCGCTC 2 cut(s) 315, 679
AccI GTMKAC 2 cut(s) 627, 832
AccII CGCG 1 cut(s) 242
AciI CCGC 9 cut(s) 240, 260, 266, 315, 511, 547, 679, 1138, 1521
AclWI GGATC 5 cut(s) 238, 767, 942, 1014, 1703
AcoI YGGCCR 3 cut(s) 204, 216, 442
AcsI RAATTY 1 cut(s) 1502
AcuI CTGAAG 5 cut(s) 1322, 1812, 2046, 2109, 2235
AcyI GRCGYC 3 cut(s) 39, 62, 345
AdeI CACNNNGTG 3 cut(s) 108, 440, 1556
AfaI GTAC 3 cut(s) 496, 920, 1080
AfeI AGCGCT 1 cut(s) 1109
AfiI CCNNNNNNNGG 4 cut(s) 29, 246, 475, 1130
AflII CTTAAG 2 cut(s) 1495, 1751
AgsI TTSAA 7 cut(s) 391, 460, 827, 1163, 1706, 1850, 2276
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 1188
Alw21I GWGCWC 3 cut(s) 847, 895, 1561
Alw26I GTCTC 3 cut(s) 27, 226, 415
Alw44I GTGCAC 2 cut(s) 843, 891
AlwI GGATC 5 cut(s) 238, 767, 942, 1014, 1703
AlwNI CAGNNNCTG 2 cut(s) 96, 307
Aor51HI AGCGCT 1 cut(s) 1109
AoxI GGCC 5 cut(s) 204, 216, 442, 614, 1271
ApaLI GTGCAC 2 cut(s) 843, 891
ApeKI GCWGC 8 cut(s) 19, 120, 280, 707, 1368, 1509, 1668, 2189
ApoI RAATTY 1 cut(s) 1502
ArsI GACNNNNNNTTYG 2 cut(s) 1010, 1042
Asp700I GAANNNNTTC 1 cut(s) 464
Asp718I GGTACC 1 cut(s) 918
AspLEI GCGC 6 cut(s) 7, 271, 347, 685, 1110, 1592
AspS9I GGNCC 6 cut(s) 76, 93, 614, 752, 1267, 2174
AsuC2I CCSGG 2 cut(s) 173, 248
AsuHPI GGTGA 8 cut(s) 76, 1380, 1624, 1729, 1949, 2001, 2064, 2127
AsuII TTCGAA 1 cut(s) 1645
AvaII GGWCC 5 cut(s) 76, 93, 752, 1267, 2174
AxyI CCTNAGG 1 cut(s) 1713
BaeGI GKGCMC 3 cut(s) 173, 847, 895
BalI TGGCCA 1 cut(s) 444
BanI GGYRCC 2 cut(s) 344, 918
BauI CACGAG 1 cut(s) 71
Bbv12I GWGCWC 3 cut(s) 847, 895, 1561
BbvCI CCTCAGC 1 cut(s) 1875
BbvI GCAGC 8 cut(s) 6, 107, 292, 694, 1355, 1496, 1655, 2201
BccI CCATC 6 cut(s) 362, 374, 1139, 1348, 1358, 2251
BceAI ACGGC 6 cut(s) 49, 52, 91, 191, 203, 2014
BcgI CGANNNNNNTGC 4 cut(s) 245, 279, 1966, 2000
BciT130I CCWGG 1 cut(s) 1190
BciVI GTATCC 1 cut(s) 1083
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 2 cut(s) 173, 248
BcoDI GTCTC 3 cut(s) 27, 226, 415
BfaI CTAG 2 cut(s) 1275, 2199
BfmI CTRYAG 2 cut(s) 88, 1153
BfoI RGCGCY 4 cut(s) 272, 348, 1111, 1593
BfrI CTTAAG 2 cut(s) 1495, 1751
BfuAI ACCTGC 5 cut(s) 95, 104, 769, 1246, 1847
BfuI GTATCC 1 cut(s) 1083
BlpI GCTNAGC 1 cut(s) 1945
Bme1390I CCNGG 3 cut(s) 173, 248, 1190
Bme18I GGWCC 5 cut(s) 76, 93, 752, 1267, 2174
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 6 cut(s) 76, 93, 614, 752, 1267, 2174
BmiI GGNNCC 6 cut(s) 346, 615, 920, 1268, 2142, 2239
BmrFI CCNGG 3 cut(s) 173, 248, 1190
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 5 cut(s) 253, 558, 1726, 1921, 2158
BmuI ACTGGG 1 cut(s) 702
BoxI GACNNNNGTC 1 cut(s) 98
BplI GAGNNNNNCTC 4 cut(s) 1094, 1126, 1476, 1508
BpmI CTGGAG 2 cut(s) 143, 2127
Bpu10I CCTNAGC 3 cut(s) 621, 1296, 1875
Bpu1102I GCTNAGC 1 cut(s) 1945
Bpu14I TTCGAA 1 cut(s) 1645
BpuMI CCSGG 2 cut(s) 173, 248
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 933
BsaHI GRCGYC 3 cut(s) 39, 62, 345
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 5 cut(s) 107, 787, 886, 1189, 1244
BsaWI WCCGGW 4 cut(s) 415, 2011, 2074, 2176
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 246, 475, 1130
Bse118I RCCGGY 5 cut(s) 202, 347, 1206, 1269, 2137
Bse1I ACTGG 3 cut(s) 160, 697, 2144
Bse21I CCTNAGG 1 cut(s) 1713
Bse8I GATNNNNATC 1 cut(s) 933
BseBI CCWGG 1 cut(s) 1190
BseDI CCNNGG 5 cut(s) 107, 787, 886, 1189, 1244
BseGI GGATG 3 cut(s) 268, 385, 1741
BseJI GATNNNNATC 1 cut(s) 933
BseLI CCNNNNNNNGG 4 cut(s) 29, 246, 475, 1130
BseMII CTCAG 7 cut(s) 600, 768, 1116, 1287, 1727, 1866, 1959
BseNI ACTGG 3 cut(s) 160, 697, 2144
BseRI GAGGAG 1 cut(s) 1370
BseSI GKGCMC 3 cut(s) 173, 847, 895
BseX3I CGGCCG 2 cut(s) 204, 216
BseXI GCAGC 8 cut(s) 6, 107, 292, 694, 1355, 1496, 1655, 2201
BseYI CCCAGC 1 cut(s) 810
BsgI GTGCAG 1 cut(s) 1224
Bsh1236I CGCG 1 cut(s) 242
Bsh1285I CGRYCG 3 cut(s) 207, 219, 255
BshFI GGCC 5 cut(s) 206, 218, 444, 616, 1273
BshNI GGYRCC 2 cut(s) 344, 918
BsiEI CGRYCG 3 cut(s) 207, 219, 255
BsiHKAI GWGCWC 3 cut(s) 847, 895, 1561
BslFI GGGAC 5 cut(s) 115, 120, 1280, 1361, 1896
BslI CCNNNNNNNGG 4 cut(s) 29, 246, 475, 1130
BsmAI GTCTC 3 cut(s) 27, 226, 415
BsmBI CGTCTC 2 cut(s) 27, 226
BsmFI GGGAC 5 cut(s) 115, 120, 1280, 1361, 1896
BsmI GAATGC 2 cut(s) 812, 1977
BsnI GGCC 5 cut(s) 206, 218, 444, 616, 1273
Bso31I GGTCTC 1 cut(s) 415
Bsp119I TTCGAA 1 cut(s) 1645
Bsp1286I GDGCHC 4 cut(s) 173, 847, 895, 1561
Bsp1720I GCTNAGC 1 cut(s) 1945
Bsp19I CCATGG 2 cut(s) 886, 1244
BspACI CCGC 9 cut(s) 240, 260, 266, 315, 511, 547, 679, 1138, 1521
BspANI GGCC 5 cut(s) 206, 218, 444, 616, 1273
BspCNI CTCAG 7 cut(s) 601, 769, 1117, 1288, 1726, 1867, 1958
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 1530
BspLI GGNNCC 6 cut(s) 346, 615, 920, 1268, 2142, 2239
BspMAI CTGCAG 1 cut(s) 92
BspMI ACCTGC 5 cut(s) 95, 104, 769, 1246, 1847
BspPI GGATC 5 cut(s) 238, 767, 942, 1014, 1703
BspQI GCTCTTC 1 cut(s) 1117
BspT104I TTCGAA 1 cut(s) 1645
BspT107I GGYRCC 2 cut(s) 344, 918
BspTI CTTAAG 2 cut(s) 1495, 1751
BspTNI GGTCTC 1 cut(s) 415
BsrBI CCGCTC 2 cut(s) 315, 679
BsrFI RCCGGY 5 cut(s) 202, 347, 1206, 1269, 2137
BsrI ACTGG 3 cut(s) 160, 697, 2144
BssAI RCCGGY 5 cut(s) 202, 347, 1206, 1269, 2137
BssECI CCNNGG 5 cut(s) 107, 787, 886, 1189, 1244
BssNAI GTATAC 1 cut(s) 628
BssNI GRCGYC 3 cut(s) 39, 62, 345
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 3 cut(s) 787, 886, 1244
Bst1107I GTATAC 1 cut(s) 628
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 1190
Bst4CI ACNGT 6 cut(s) 179, 837, 879, 897, 1411, 1480
Bst6I CTCTTC 5 cut(s) 1117, 1761, 1767, 2022, 2085
BstACI GRCGYC 3 cut(s) 39, 62, 345
BstAFI CTTAAG 2 cut(s) 1495, 1751
BstAPI GCANNNNNTGC 2 cut(s) 51, 96
BstBAI YACGTR 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 1645
BstC8I GCNNGC 9 cut(s) 17, 47, 147, 204, 230, 349, 618, 681, 2162
BstDEI CTNAG 9 cut(s) 585, 609, 621, 777, 1125, 1296, 1713, 1875, 1945
BstDSI CCRYGG 3 cut(s) 107, 886, 1244
BstENI CCTNNNNNAGG 1 cut(s) 1128
BstF5I GGATG 3 cut(s) 268, 385, 1741
BstFNI CGCG 1 cut(s) 242
BstH2I RGCGCY 4 cut(s) 272, 348, 1111, 1593
BstHHI GCGC 6 cut(s) 7, 271, 347, 685, 1110, 1592
BstMAI GTCTC 3 cut(s) 27, 226, 415
BstMCI CGRYCG 3 cut(s) 207, 219, 255
BstNI CCWGG 1 cut(s) 1190
BstNSI RCATGY 1 cut(s) 49
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 171, 246, 1188
BstSFI CTRYAG 2 cut(s) 88, 1153
BstSLI GKGCMC 3 cut(s) 173, 847, 895
BstSNI TACGTA 1 cut(s) 578
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 8 cut(s) 6, 107, 292, 694, 1355, 1496, 1655, 2201
BstX2I RGATCY 1 cut(s) 1708
BstXI CCANNNNNNTGG 3 cut(s) 580, 863, 2060
BstYI RGATCY 1 cut(s) 1708
BstZ17I GTATAC 1 cut(s) 628
BstZI CGGCCG 2 cut(s) 204, 216
Bsu36I CCTNAGG 1 cut(s) 1713
BsuI GTATCC 1 cut(s) 1083
BsuRI GGCC 5 cut(s) 206, 218, 444, 616, 1273
BtgI CCRYGG 3 cut(s) 107, 886, 1244
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 268, 385, 1741
BtsIMutI CAGTG 4 cut(s) 167, 842, 1807, 1836
BveI ACCTGC 5 cut(s) 95, 104, 769, 1246, 1847
Cac8I GCNNGC 9 cut(s) 17, 47, 147, 204, 230, 349, 618, 681, 2162
CaiI CAGNNNCTG 2 cut(s) 96, 307
CciI TCATGA 1 cut(s) 1530
CfoI GCGC 6 cut(s) 7, 271, 347, 685, 1110, 1592
Cfr10I RCCGGY 5 cut(s) 202, 347, 1206, 1269, 2137
Cfr13I GGNCC 6 cut(s) 76, 93, 614, 752, 1267, 2174
CseI GACGC 3 cut(s) 28, 70, 88
Csp6I GTAC 3 cut(s) 495, 919, 1079
CviAII CATG 9 cut(s) 24, 46, 438, 857, 887, 938, 1245, 1262, 1531
CviQI GTAC 3 cut(s) 495, 919, 1079
DdeI CTNAG 9 cut(s) 585, 609, 621, 777, 1125, 1296, 1713, 1875, 1945
DinI GGCGCC 1 cut(s) 346
DraIII CACNNNGTG 3 cut(s) 108, 440, 1556
EaeI YGGCCR 3 cut(s) 204, 216, 442
EagI CGGCCG 2 cut(s) 204, 216
Eam1104I CTCTTC 5 cut(s) 1117, 1761, 1767, 2022, 2085
EarI CTCTTC 5 cut(s) 1117, 1761, 1767, 2022, 2085
EciI GGCGGA 1 cut(s) 275
EclXI CGGCCG 2 cut(s) 204, 216
Eco105I TACGTA 1 cut(s) 578
Eco130I CCWWGG 3 cut(s) 787, 886, 1244
Eco31I GGTCTC 1 cut(s) 415
Eco32I GATATC 1 cut(s) 1690
Eco47I GGWCC 5 cut(s) 76, 93, 752, 1267, 2174
Eco47III AGCGCT 1 cut(s) 1109
Eco52I CGGCCG 2 cut(s) 204, 216
Eco57I CTGAAG 5 cut(s) 1322, 1812, 2046, 2109, 2235
Eco81I CCTNAGG 1 cut(s) 1713
EcoNI CCTNNNNNAGG 1 cut(s) 1128
EcoO109I RGGNCCY 2 cut(s) 93, 614
EcoRI GAATTC 1 cut(s) 1502
EcoRII CCWGG 1 cut(s) 1188
EcoRV GATATC 1 cut(s) 1690
EcoT14I CCWWGG 3 cut(s) 787, 886, 1244
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
ErhI CCWWGG 3 cut(s) 787, 886, 1244
Esp3I CGTCTC 2 cut(s) 27, 226
FaeI CATG 9 cut(s) 27, 49, 441, 860, 890, 941, 1248, 1265, 1534
FaqI GGGAC 5 cut(s) 115, 120, 1280, 1361, 1896
FatI CATG 9 cut(s) 23, 45, 437, 856, 886, 937, 1244, 1261, 1530
FauI CCCGC 4 cut(s) 308, 554, 672, 1514
FauNDI CATATG 2 cut(s) 601, 1117
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 2 cut(s) 627, 832
FokI GGATG 3 cut(s) 275, 392, 1748
FspBI CTAG 2 cut(s) 1275, 2199
GlaI GCGC 6 cut(s) 6, 270, 346, 684, 1109, 1591
GsaI CCCAGC 1 cut(s) 814
GsuI CTGGAG 2 cut(s) 143, 2127
HaeII RGCGCY 4 cut(s) 272, 348, 1111, 1593
HaeIII GGCC 5 cut(s) 206, 218, 444, 616, 1273
HgaI GACGC 3 cut(s) 28, 70, 88
HhaI GCGC 6 cut(s) 7, 271, 347, 685, 1110, 1592
Hin1I GRCGYC 3 cut(s) 39, 62, 345
Hin1II CATG 9 cut(s) 27, 49, 441, 860, 890, 941, 1248, 1265, 1534
Hin6I GCGC 6 cut(s) 5, 269, 345, 683, 1108, 1590
HinP1I GCGC 6 cut(s) 5, 269, 345, 683, 1108, 1590
HincII GTYRAC 3 cut(s) 542, 833, 1864
HindII GTYRAC 3 cut(s) 542, 833, 1864
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 7 cut(s) 140, 1149, 1185, 1424, 1745, 1784, 1909
HpaI GTTAAC 1 cut(s) 1864
HphI GGTGA 8 cut(s) 76, 1380, 1624, 1729, 1949, 2001, 2064, 2127
Hpy166II GTNNAC 7 cut(s) 364, 542, 628, 833, 845, 893, 1864
Hpy188I TCNGA 6 cut(s) 641, 1416, 1484, 1696, 1822, 2269
Hpy188III TCNNGA 8 cut(s) 137, 469, 776, 912, 1446, 1531, 1706, 1901
Hpy8I GTNNAC 7 cut(s) 364, 542, 628, 833, 845, 893, 1864
Hpy99I CGWCG 3 cut(s) 32, 64, 70
HpyCH4III ACNGT 6 cut(s) 179, 837, 879, 897, 1411, 1480
HpyCH4IV ACGT 3 cut(s) 9, 114, 577
HpyF3I CTNAG 9 cut(s) 585, 609, 621, 777, 1125, 1296, 1713, 1875, 1945
HpySE526I ACGT 3 cut(s) 9, 114, 577
Hsp92I GRCGYC 3 cut(s) 39, 62, 345
Hsp92II CATG 9 cut(s) 27, 49, 441, 860, 890, 941, 1248, 1265, 1534
HspAI GCGC 6 cut(s) 5, 269, 345, 683, 1108, 1590
KasI GGCGCC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 922
KroI GCCGGC 2 cut(s) 202, 347
KroNI GCCGGC 2 cut(s) 204, 349
Ksp22I TGATCA 1 cut(s) 742
KspAI GTTAAC 1 cut(s) 1864
LguI GCTCTTC 1 cut(s) 1117
LmnI GCTCC 3 cut(s) 277, 304, 2146
Lsp1109I GCAGC 8 cut(s) 6, 107, 292, 694, 1355, 1496, 1655, 2201
LweI GCATC 5 cut(s) 253, 558, 1726, 1921, 2158
MaeI CTAG 2 cut(s) 1275, 2199
MaeII ACGT 3 cut(s) 9, 114, 577
MaeIII GTNAC 8 cut(s) 100, 427, 604, 727, 1226, 1386, 1746, 1755
MbiI CCGCTC 2 cut(s) 315, 679
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 1 cut(s) 1708
MhlI GDGCHC 4 cut(s) 173, 847, 895, 1561
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 9 cut(s) 391, 448, 553, 732, 1158, 1502, 1816, 1830, 1972
MluNI TGGCCA 1 cut(s) 444
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 3 cut(s) 1158, 1754, 1918
MmeI TCCRAC 3 cut(s) 460, 1151, 1910
Mox20I TGGCCA 1 cut(s) 444
MroNI GCCGGC 2 cut(s) 202, 347
MroXI GAANNNNTTC 1 cut(s) 464
MscI TGGCCA 1 cut(s) 444
MseI TTAA 5 cut(s) 1197, 1496, 1730, 1752, 1863
MslI CAYNNNNRTG 3 cut(s) 578, 1841, 2121
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 5 cut(s) 19, 120, 740, 1509, 1790
MspCI CTTAAG 2 cut(s) 1495, 1751
MspR9I CCNGG 3 cut(s) 173, 248, 1190
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 2 cut(s) 812, 1977
MvaI CCWGG 1 cut(s) 1190
MvnI CGCG 1 cut(s) 242
NaeI GCCGGC 2 cut(s) 204, 349
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 2 cut(s) 173, 248
NcoI CCATGG 2 cut(s) 886, 1244
NdeI CATATG 2 cut(s) 601, 1117
NgoMIV GCCGGC 2 cut(s) 202, 347
NlaIII CATG 9 cut(s) 27, 49, 441, 860, 890, 941, 1248, 1265, 1534
NlaIV GGNNCC 6 cut(s) 346, 615, 920, 1268, 2142, 2239
NmuCI GTSAC 6 cut(s) 100, 727, 1226, 1386, 1746, 1755
NspI RCATGY 1 cut(s) 49
NspV TTCGAA 1 cut(s) 1645
PaeI GCATGC 1 cut(s) 49
PagI TCATGA 1 cut(s) 1530
PaqCI CACCTGC 2 cut(s) 95, 1847
PciSI GCTCTTC 1 cut(s) 1117
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 2 cut(s) 812, 1977
PdiI GCCGGC 2 cut(s) 204, 349
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 4 cut(s) 140, 1185, 1424, 1784
PflFI GACNNNGTC 2 cut(s) 38, 64
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 3 cut(s) 1157, 1753, 1917
PluTI GGCGCC 1 cut(s) 348
PpsI GAGTC 3 cut(s) 1157, 1753, 1917
Ppu21I YACGTR 1 cut(s) 578
PpuMI RGGWCCY 1 cut(s) 93
PshAI GACNNNNGTC 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 1188
PspFI CCCAGC 1 cut(s) 810
PspGI CCWGG 1 cut(s) 1188
PspN4I GGNNCC 6 cut(s) 346, 615, 920, 1268, 2142, 2239
PspPI GGNCC 6 cut(s) 76, 93, 614, 752, 1267, 2174
PspPPI RGGWCCY 1 cut(s) 93
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 2 cut(s) 96, 307
PsuI RGATCY 1 cut(s) 1708
PsyI GACNNNGTC 2 cut(s) 38, 64
PvuI CGATCG 1 cut(s) 255
PvuII CAGCTG 5 cut(s) 19, 120, 740, 1509, 1790
RsaI GTAC 3 cut(s) 496, 920, 1080
RsaNI GTAC 3 cut(s) 495, 919, 1079
RseI CAYNNNNRTG 3 cut(s) 578, 1841, 2121
SalI GTCGAC 1 cut(s) 831
SapI GCTCTTC 1 cut(s) 1117
SaqAI TTAA 5 cut(s) 1197, 1496, 1730, 1752, 1863
Sau96I GGNCC 6 cut(s) 76, 93, 614, 752, 1267, 2174
SbfI CCTGCAGG 1 cut(s) 92
SchI GAGTC 3 cut(s) 1158, 1754, 1918
ScrFI CCNGG 3 cut(s) 173, 248, 1190
SdaI CCTGCAGG 1 cut(s) 92
SduI GDGCHC 4 cut(s) 173, 847, 895, 1561
SfaNI GCATC 5 cut(s) 253, 558, 1726, 1921, 2158
SfcI CTRYAG 2 cut(s) 88, 1153
SfoI GGCGCC 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 1645
SinI GGWCC 5 cut(s) 76, 93, 752, 1267, 2174
SmiMI CAYNNNNRTG 3 cut(s) 578, 1841, 2121
SmlI CTYRAG 2 cut(s) 1495, 1751
SmoI CTYRAG 2 cut(s) 1495, 1751
SnaBI TACGTA 1 cut(s) 578
SphI GCATGC 1 cut(s) 49
Sse8387I CCTGCAGG 1 cut(s) 92
Sse9I AATT 9 cut(s) 391, 448, 553, 732, 1158, 1502, 1816, 1830, 1972
SsiI CCGC 9 cut(s) 240, 260, 266, 315, 511, 547, 679, 1138, 1521
SspDI GGCGCC 1 cut(s) 344
SspI AATATT 1 cut(s) 1474
SspMI CTAG 2 cut(s) 1275, 2199
StyD4I CCNGG 3 cut(s) 171, 246, 1188
StyI CCWWGG 3 cut(s) 787, 886, 1244
TaaI ACNGT 6 cut(s) 179, 837, 879, 897, 1411, 1480
TaiI ACGT 3 cut(s) 12, 117, 580
TaqI TCGA 4 cut(s) 255, 832, 1435, 1645
TasI AATT 9 cut(s) 391, 448, 553, 732, 1158, 1502, 1816, 1830, 1972
TauI GCSGC 3 cut(s) 242, 269, 513
TfiI GAWTC 4 cut(s) 140, 1185, 1424, 1784
Tru1I TTAA 5 cut(s) 1197, 1496, 1730, 1752, 1863
Tru9I TTAA 5 cut(s) 1197, 1496, 1730, 1752, 1863
TscAI CASTG 4 cut(s) 167, 842, 1807, 1843
TseFI GTSAC 6 cut(s) 100, 727, 1226, 1386, 1746, 1755
TseI GCWGC 8 cut(s) 19, 120, 280, 707, 1368, 1509, 1668, 2189
Tsp45I GTSAC 6 cut(s) 100, 727, 1226, 1386, 1746, 1755
TspDTI ATGAA 6 cut(s) 1104, 1248, 1272, 1779, 2052, 2115
TspGWI ACGGA 2 cut(s) 45, 290
TspRI CASTG 4 cut(s) 167, 842, 1807, 1843
Tth111I GACNNNGTC 2 cut(s) 38, 64
Vha464I CTTAAG 2 cut(s) 1495, 1751
VneI GTGCAC 2 cut(s) 843, 891
VpaK11BI GGWCC 5 cut(s) 76, 93, 752, 1267, 2174
XagI CCTNNNNNAGG 1 cut(s) 1128
XapI RAATTY 1 cut(s) 1502
XceI RCATGY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 2 cut(s) 476, 1963
XmiI GTMKAC 2 cut(s) 627, 832
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 2 cut(s) 1275, 2199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.