FvH4_4g22630

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000644
Physical Location & Seq
Forward (+)
25371184 .. 25375414
4231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22630.t1

Sequence Viewer

Length: 2040 bp
ATGGCTGACGCCGGCGGCACCGTCCCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAAGCAGACGCCGTCGCCGGAGGAGATTCTCCACTGCAAGACGTGCACCTCCCCCTGGCACGTGTCCTGCCTCCCCTTCCAGCCCCACACTGTGGCCGAGGCTCTGGACTGGGAGTGTCCGGACTGTGCTGCTCCGGCTGAGGAGTCGTCTGGTCACGTGAATTCTGTCGGTGACATCGGAGGAGACGGAGGTCTGGTTGCGGCGATTAAAGCTTTAGAGGCGGACGAGTCATTGACGGAGAGCGAGAAGGCGAGGAAACGACAGGCGCTGCTGTCCAAAACAGCGTCGGTGCCGTCCGATGACGAGACGAAGATGAACGGTGGTAATGACGACGCACTGAAGCGGAGGTTTCGCTGCACCATCTGCATGGGAATTCCTGAGAGACCTGTTACGACACCATGCGGCCATAATTTCTGCCTGAAATGCTACAACAAACACGTTGCAGAATGCAAACGAAAAGGAGGAAAACTACAATGTGCAAATTGCCGCGGAACGATTACAGAGCATCTGAAAATCAACGAGATTCTGGTGAGGGCGATACGTAGGGCGATAGTAGACAGAACCCAGGTCGCAGGGGACAGCCAAAGCCGCGTGGTCCATTACCTTCACAACCAGGACCGTCCGGACCGAGCTTTCAGAACCGAGAGGGCTAAGAAGGCTGGAAATGCCAATGCCTCGGCCGGAAGAGTCTTCGTAACGGTTCCTAAGGACCATTTCGGGCCCATAACGGCCGAGCATGACCCGGAGAGGAATGAGGGTGTACTGGTGGGGAGGACATGGGAGAATCGACTGGAATGCGTGCAATGGGGCGTTCATCGGGCCCCCGTTGCTGGGATTTGCGGGCAGAGTAATCATGGCGCTCAGTCTATTGTGCTGTCCGGCGGTTACGAAGACGATGAGGATCACGGGGAGTGGTTCATTTACACCGGATGCGGTGGAAAAGATTTAGGAGGAAATAAGCGGACGAATAAAGAGCACAGTAGTGACCAGAAGTTTGTTTACAGGAATGAGTCGCTGAGGATAAGTTGCCGGATGGGTTATCCCGTGCGAGTAGTCAGAACCCACAAGGACGAGAGGTCATCATATGCGCCTAGAGAAAAAGGATTGCGATACGATGGGATCTACAGAATTGAGAAATGTTGGCTGAAGAAGGGAGCCCAGGGTTTCAAGGTATGCAGATATCTTTTCGTGAGGTGTGAAAATGAGCCTGCCCCTTGGACATGTGATGTTCTTGGGGACCGTCCGAGGCCTCTACCAGCTATCAAGGAGTTGAAAGATGCAACTGATATAACAGAAAGAGAAGGATCTCCGTCATGGGACTACGATGAGGAGAAGGAGTGCTGGATGTGGAAAAAGCCTCCACCACCTAGCAAGCAACGAGTTAAGGATAGCGGGGTTATAGAGGACGGGAAGAAAGTGAGAGTGAAGAGAGTTTATTGCCGGAGACAGAACATGGAAGAAGAGATTCGGACTGAGTTTGGCTGCCATATATGTAAAAAGGTTTTGACTTCCCCAGTTACGACACCATGTGCTCATAACTTCTGCAAAGCTTGCTTGGAAGGTGCCTTTGCTGGTATGAGTCATATAAAAGAGAGGACCTGCCAAGGTAGAAGAACACTGCGACCACGGAAGAATCTCATGAATTGCCCGCTATGTTCAACTGACATAGCTGAGTTTCTCCAAAATCTAGAGGTAAATACGGACCTTATGAATGCTATAGAAGAAATGCAGCAAAAATTGAAAGATATGGAAGAGGAAAAGAGAGATGAAGAAGTAGAAGCTCAGGAATCGGGAGAAATTGACAATGCTGGAAAAGAGACTGTGGATGAAGCCAAAGAAAGCATCTCACCAGCACCCGAGACTACCGAAACTACACCGCAACAAGCTTGTGAGAAAAAACCAACTCGTAAGCGAAAGATGTCGAACAACACCGAAATTGTGGTATGCTGGGGTAGCAGTGAGGAGCAAGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

680

Amino Acids

76.2

Weight (kDa)

6.99

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 140 - 183 1.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 140 - 183 1e-05 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 272 - 422 2.8e-49 SAD/SRA domain
zf-RING_UBOX PF13445 516 - 555 2e-07 RING-type zinc-finger
zf-C3HC4_2 PF13923 516 - 541 6.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1670
AccB1I GGYRCC 3 cut(s) 17, 352, 1625
AccB7I CCANNNNNTGG 1 cut(s) 154
AccI GTMKAC 1 cut(s) 618
AccII CGCG 2 cut(s) 552, 654
AccIII TCCGGA 2 cut(s) 181, 685
AclWI GGATC 3 cut(s) 972, 1190, 1375
AcoI YGGCCR 4 cut(s) 156, 466, 741, 792
AcsI RAATTY 2 cut(s) 223, 435
AcuI CTGAAG 2 cut(s) 422, 1229
AcvI CACGTG 2 cut(s) 124, 220
AcyI GRCGYC 2 cut(s) 9, 71
AdeI CACNNNGTG 2 cut(s) 154, 1592
AfaI GTAC 1 cut(s) 825
AfiI CCNNNNNNNGG 4 cut(s) 117, 154, 893, 894
AflIII ACRYGT 3 cut(s) 123, 499, 1283
AgsI TTSAA 4 cut(s) 1231, 1336, 1722, 1804
AhdI GACNNNNNGTC 1 cut(s) 1138
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 4 cut(s) 116, 627, 675, 1221
AleI CACNNNNGTG 1 cut(s) 1044
AluBI AGCT 7 cut(s) 275, 695, 1322, 1613, 1733, 1844, 1949
AluI AGCT 7 cut(s) 275, 695, 1322, 1613, 1733, 1844, 1949
Alw21I GWGCWC 3 cut(s) 110, 1041, 1597
Alw26I GTCTC 6 cut(s) 240, 362, 439, 1501, 1874, 1916
Alw44I GTGCAC 1 cut(s) 106
AlwI GGATC 3 cut(s) 972, 1190, 1375
AlwNI CAGNNNCTG 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 1919
Aor13HI TCCGGA 2 cut(s) 181, 685
AoxI GGCC 7 cut(s) 156, 466, 741, 782, 792, 882, 1310
ApaI GGGCCC 2 cut(s) 786, 886
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 5 cut(s) 191, 331, 417, 1545, 1792
ApoI RAATTY 2 cut(s) 223, 435
ArsI GACNNNNNNTTYG 2 cut(s) 1040, 1072
Asp700I GAANNNNTTC 1 cut(s) 1527
AspLEI GCGC 3 cut(s) 331, 923, 1153
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 3 cut(s) 245, 604, 1902
AvaI CYCGRG 1 cut(s) 1919
AvaII GGWCC 7 cut(s) 658, 679, 688, 772, 1300, 1659, 1765
AxyI CCTNAGG 1 cut(s) 768
BaeGI GKGCMC 3 cut(s) 110, 786, 886
BanI GGYRCC 3 cut(s) 17, 352, 1625
BanII GRGCYC 3 cut(s) 786, 886, 1222
BarI GAAGNNNNNNTAC 2 cut(s) 1046, 1078
BbrPI CACGTG 2 cut(s) 124, 220
BbsI GAAGAC 2 cut(s) 745, 960
Bbv12I GWGCWC 3 cut(s) 110, 1041, 1597
BbvCI CCTCAGC 2 cut(s) 201, 1079
BbvI GCAGC 5 cut(s) 178, 318, 404, 1532, 1804
BccI CCATC 3 cut(s) 431, 1090, 1172
BceAI ACGGC 4 cut(s) 58, 61, 340, 807
BcgI CGANNNNNNTGC 2 cut(s) 840, 874
BciT130I CCWGG 4 cut(s) 118, 629, 677, 1223
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 6 cut(s) 240, 362, 439, 1501, 1874, 1916
BfaI CTAG 3 cut(s) 1155, 1431, 1751
BfmI CTRYAG 2 cut(s) 1186, 1779
BfoI RGCGCY 2 cut(s) 332, 924
BfuAI ACCTGC 1 cut(s) 1670
Bme1390I CCNGG 5 cut(s) 118, 629, 677, 806, 1223
Bme18I GGWCC 7 cut(s) 658, 679, 688, 772, 1300, 1659, 1765
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmeT110I CYCGRG 1 cut(s) 1919
BmgBI CACGTC 1 cut(s) 105
BmiI GGNNCC 9 cut(s) 19, 354, 765, 784, 884, 885, 1219, 1301, 1627
BmrFI CCNGG 5 cut(s) 118, 629, 677, 806, 1223
BmrI ACTGGG 2 cut(s) 181, 1571
BmsI GCATC 4 cut(s) 577, 983, 1330, 1914
BmuI ACTGGG 2 cut(s) 181, 1571
BoxI GACNNNNGTC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 745, 960
Bpu10I CCTNAGC 3 cut(s) 201, 1079, 1845
BpuMI CCSGG 1 cut(s) 806
BsaAI YACGTR 3 cut(s) 124, 220, 605
BsaBI GATNNNNATC 1 cut(s) 963
BsaHI GRCGYC 2 cut(s) 9, 71
BsaI GGTCTC 1 cut(s) 439
BsaWI WCCGGW 3 cut(s) 181, 685, 989
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 1385, 1415
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 154, 893, 894
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 176, 831, 858, 1577
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 872
Bse8I GATNNNNATC 1 cut(s) 963
BseAI TCCGGA 2 cut(s) 181, 685
BseBI CCWGG 4 cut(s) 118, 629, 677, 1223
BseGI GGATG 4 cut(s) 998, 1101, 1413, 1894
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 4 cut(s) 117, 154, 893, 894
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 7 cut(s) 192, 432, 938, 1070, 1527, 1725, 1859
BseNI ACTGG 4 cut(s) 176, 831, 858, 1577
BseRI GAGGAG 5 cut(s) 98, 218, 258, 1406, 2039
BseSI GKGCMC 3 cut(s) 110, 786, 886
BseX3I CGGCCG 2 cut(s) 741, 792
BseXI GCAGC 5 cut(s) 178, 318, 404, 1532, 1804
BseYI CCCAGC 2 cut(s) 893, 2010
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 2 cut(s) 552, 654
Bsh1285I CGRYCG 2 cut(s) 744, 795
BshFI GGCC 7 cut(s) 158, 468, 743, 784, 794, 884, 1312
BshNI GGYRCC 3 cut(s) 17, 352, 1625
BsiEI CGRYCG 2 cut(s) 744, 795
BsiHKAI GWGCWC 3 cut(s) 110, 1041, 1597
BsiHKCI CYCGRG 1 cut(s) 1919
BslFI GGGAC 4 cut(s) 8, 653, 1313, 1394
BslI CCNNNNNNNGG 4 cut(s) 117, 154, 893, 894
BsmAI GTCTC 6 cut(s) 240, 362, 439, 1501, 1874, 1916
BsmBI CGTCTC 2 cut(s) 240, 362
BsmFI GGGAC 4 cut(s) 8, 653, 1313, 1394
BsmI GAATGC 3 cut(s) 515, 863, 1780
BsnI GGCC 7 cut(s) 158, 468, 743, 784, 794, 884, 1312
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 1919
Bsp120I GGGCCC 2 cut(s) 782, 882
Bsp1286I GDGCHC 6 cut(s) 110, 786, 886, 1041, 1222, 1597
Bsp13I TCCGGA 2 cut(s) 181, 685
Bsp143I GATC 3 cut(s) 964, 1182, 1367
BspANI GGCC 7 cut(s) 158, 468, 743, 784, 794, 884, 1312
BspCNI CTCAG 7 cut(s) 193, 433, 937, 1071, 1528, 1726, 1858
BspEI TCCGGA 2 cut(s) 181, 685
BspFNI CGCG 2 cut(s) 552, 654
BspHI TCATGA 1 cut(s) 1701
BspLI GGNNCC 9 cut(s) 19, 354, 765, 784, 884, 885, 1219, 1301, 1627
BspMI ACCTGC 1 cut(s) 1670
BspPI GGATC 3 cut(s) 972, 1190, 1375
BspT107I GGYRCC 3 cut(s) 17, 352, 1625
BspTNI GGTCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 872
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 4 cut(s) 176, 831, 858, 1577
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 3 cut(s) 964, 1182, 1367
BssNI GRCGYC 2 cut(s) 9, 71
BssT1I CCWWGG 2 cut(s) 1277, 1666
Bst2UI CCWGG 4 cut(s) 118, 629, 677, 1223
Bst4CI ACNGT 9 cut(s) 22, 154, 188, 383, 683, 763, 1043, 1304, 1885
Bst6I CTCTTC 4 cut(s) 742, 1484, 1518, 1809
BstACI GRCGYC 2 cut(s) 9, 71
BstAPI GCANNNNNTGC 4 cut(s) 60, 105, 426, 1614
BstBAI YACGTR 3 cut(s) 124, 220, 605
BstC8I GCNNGC 8 cut(s) 13, 65, 863, 905, 1272, 1436, 1615, 1712
BstDEI CTNAG 9 cut(s) 201, 441, 714, 768, 924, 1079, 1536, 1734, 1845
BstDSI CCRYGG 2 cut(s) 550, 1688
BstF5I GGATG 4 cut(s) 998, 1101, 1413, 1894
BstFNI CGCG 2 cut(s) 552, 654
BstH2I RGCGCY 2 cut(s) 332, 924
BstHHI GCGC 3 cut(s) 331, 923, 1153
BstKTI GATC 3 cut(s) 967, 1185, 1370
BstMAI GTCTC 6 cut(s) 240, 362, 439, 1501, 1874, 1916
BstMBI GATC 3 cut(s) 964, 1182, 1367
BstMCI CGRYCG 2 cut(s) 744, 795
BstNI CCWGG 4 cut(s) 118, 629, 677, 1223
BstNSI RCATGY 1 cut(s) 1287
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 5 cut(s) 116, 627, 675, 804, 1221
BstSFI CTRYAG 2 cut(s) 1186, 1779
BstSLI GKGCMC 3 cut(s) 110, 786, 886
BstSNI TACGTA 1 cut(s) 605
BstUI CGCG 2 cut(s) 552, 654
BstV1I GCAGC 5 cut(s) 178, 318, 404, 1532, 1804
BstV2I GAAGAC 2 cut(s) 745, 960
BstX2I RGATCY 2 cut(s) 1182, 1367
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 2 cut(s) 1182, 1367
BstZI CGGCCG 2 cut(s) 741, 792
Bsu36I CCTNAGG 1 cut(s) 768
BsuRI GGCC 7 cut(s) 158, 468, 743, 784, 794, 884, 1312
BtgI CCRYGG 2 cut(s) 550, 1688
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 4 cut(s) 998, 1101, 1413, 1894
BtsI GCAGTG 3 cut(s) 94, 1679, 2026
BtsIMutI CAGTG 5 cut(s) 94, 150, 398, 1679, 2026
BveI ACCTGC 1 cut(s) 1670
Cac8I GCNNGC 8 cut(s) 13, 65, 863, 905, 1272, 1436, 1615, 1712
CaiI CAGNNNCTG 1 cut(s) 331
CciI TCATGA 1 cut(s) 1701
CfoI GCGC 3 cut(s) 331, 923, 1153
Cfr10I RCCGGY 1 cut(s) 11
Cfr42I CCGCGG 1 cut(s) 553
CpoI CGGWCCG 1 cut(s) 688
CseI GACGC 4 cut(s) 17, 79, 336, 404
Csp6I GTAC 1 cut(s) 824
CspI CGGWCCG 1 cut(s) 688
CviQI GTAC 1 cut(s) 824
DdeI CTNAG 9 cut(s) 201, 441, 714, 768, 924, 1079, 1536, 1734, 1845
DpnI GATC 3 cut(s) 966, 1184, 1369
DpnII GATC 3 cut(s) 964, 1182, 1367
DraIII CACNNNGTG 2 cut(s) 154, 1592
DriI GACNNNNNGTC 1 cut(s) 1138
EaeI YGGCCR 4 cut(s) 156, 466, 741, 792
EagI CGGCCG 2 cut(s) 741, 792
Eam1104I CTCTTC 4 cut(s) 742, 1484, 1518, 1809
Eam1105I GACNNNNNGTC 1 cut(s) 1138
EarI CTCTTC 4 cut(s) 742, 1484, 1518, 1809
EciI GGCGGA 1 cut(s) 299
EclXI CGGCCG 2 cut(s) 741, 792
Eco105I TACGTA 1 cut(s) 605
Eco130I CCWWGG 2 cut(s) 1277, 1666
Eco147I AGGCCT 1 cut(s) 1312
Eco24I GRGCYC 3 cut(s) 786, 886, 1222
Eco31I GGTCTC 1 cut(s) 439
Eco32I GATATC 1 cut(s) 1244
Eco47I GGWCC 7 cut(s) 658, 679, 688, 772, 1300, 1659, 1765
Eco52I CGGCCG 2 cut(s) 741, 792
Eco57I CTGAAG 2 cut(s) 422, 1229
Eco72I CACGTG 2 cut(s) 124, 220
Eco81I CCTNAGG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 1919
EcoO109I RGGNCCY 2 cut(s) 883, 1659
EcoRI GAATTC 2 cut(s) 223, 435
EcoRII CCWGG 4 cut(s) 116, 627, 675, 1221
EcoRV GATATC 1 cut(s) 1244
EcoT14I CCWWGG 2 cut(s) 1277, 1666
EcoT38I GRGCYC 3 cut(s) 786, 886, 1222
ErhI CCWWGG 2 cut(s) 1277, 1666
Esp3I CGTCTC 2 cut(s) 240, 362
FaqI GGGAC 4 cut(s) 8, 653, 1313, 1394
FauI CCCGC 3 cut(s) 896, 1448, 1719
FauNDI CATATG 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 618
FokI GGATG 4 cut(s) 1005, 1108, 1420, 1901
FriOI GRGCYC 3 cut(s) 786, 886, 1222
FspBI CTAG 3 cut(s) 1155, 1431, 1751
GlaI GCGC 3 cut(s) 330, 922, 1152
GsaI CCCAGC 2 cut(s) 897, 2014
HaeII RGCGCY 2 cut(s) 332, 924
HaeIII GGCC 7 cut(s) 158, 468, 743, 784, 794, 884, 1312
HgaI GACGC 4 cut(s) 17, 79, 336, 404
HhaI GCGC 3 cut(s) 331, 923, 1153
Hin1I GRCGYC 2 cut(s) 9, 71
Hin6I GCGC 3 cut(s) 329, 921, 1151
HinP1I GCGC 3 cut(s) 329, 921, 1151
HindIII AAGCTT 3 cut(s) 273, 1611, 1947
HphI GGTGA 3 cut(s) 245, 604, 1902
Hpy166II GTNNAC 4 cut(s) 108, 619, 824, 1063
Hpy188I TCNGA 7 cut(s) 242, 361, 573, 701, 1121, 1308, 1533
Hpy188III TCNNGA 9 cut(s) 167, 182, 440, 686, 1252, 1702, 1751, 1847, 1854
Hpy8I GTNNAC 4 cut(s) 108, 619, 824, 1063
Hpy99I CGWCG 4 cut(s) 47, 79, 352, 398
HpyAV CCTTC 8 cut(s) 148, 304, 677, 712, 1207, 1358, 1390, 1616
HpyCH4III ACNGT 9 cut(s) 22, 154, 188, 383, 683, 763, 1043, 1304, 1885
HpyCH4IV ACGT 5 cut(s) 104, 123, 219, 501, 604
HpyF3I CTNAG 9 cut(s) 201, 441, 714, 768, 924, 1079, 1536, 1734, 1845
HpySE526I ACGT 5 cut(s) 104, 123, 219, 501, 604
Hsp92I GRCGYC 2 cut(s) 9, 71
HspAI GCGC 3 cut(s) 329, 921, 1151
Kpn2I TCCGGA 2 cut(s) 181, 685
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
KspI CCGCGG 1 cut(s) 553
Kzo9I GATC 3 cut(s) 964, 1182, 1367
LmnI GCTCC 3 cut(s) 199, 1217, 2026
Lsp1109I GCAGC 5 cut(s) 178, 318, 404, 1532, 1804
LweI GCATC 4 cut(s) 577, 983, 1330, 1914
MaeI CTAG 3 cut(s) 1155, 1431, 1751
MaeII ACGT 5 cut(s) 104, 123, 219, 501, 604
MaeIII GTNAC 7 cut(s) 215, 233, 451, 757, 947, 1046, 1579
MalI GATC 3 cut(s) 966, 1184, 1369
MboI GATC 3 cut(s) 964, 1182, 1367
MflI RGATCY 2 cut(s) 1182, 1367
MhlI GDGCHC 6 cut(s) 110, 786, 886, 1041, 1222, 1597
MluCI AATT 9 cut(s) 223, 435, 472, 544, 1191, 1705, 1799, 1860, 1998
MlyI GAGTC 5 cut(s) 215, 299, 759, 1082, 1651
MreI CGCCGGCG 1 cut(s) 11
MroI TCCGGA 2 cut(s) 181, 685
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 1527
MseI TTAA 2 cut(s) 270, 1446
MslI CAYNNNNRTG 3 cut(s) 53, 428, 1044
MspA1I CMGCKG 1 cut(s) 552
MspR9I CCNGG 5 cut(s) 118, 629, 677, 806, 1223
Mva1269I GAATGC 3 cut(s) 515, 863, 1780
MvaI CCWGG 4 cut(s) 118, 629, 677, 1223
MvnI CGCG 2 cut(s) 552, 654
NaeI GCCGGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 806
NdeI CATATG 1 cut(s) 1147
NdeII GATC 3 cut(s) 964, 1182, 1367
NgoMIV GCCGGC 1 cut(s) 11
NlaIV GGNNCC 9 cut(s) 19, 354, 765, 784, 884, 885, 1219, 1301, 1627
NmeAIII GCCGAG 3 cut(s) 184, 719, 820
NmuCI GTSAC 3 cut(s) 215, 233, 1046
NspI RCATGY 1 cut(s) 1287
OliI CACNNNNGTG 1 cut(s) 1044
PagI TCATGA 1 cut(s) 1701
PasI CCCWGGG 1 cut(s) 1222
PceI AGGCCT 1 cut(s) 1312
PciI ACATGT 1 cut(s) 1283
PctI GAATGC 3 cut(s) 515, 863, 1780
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 1527
PfeI GAWTC 6 cut(s) 88, 586, 847, 1528, 1696, 1850
PflFI GACNNNGTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 154
PleI GAGTC 5 cut(s) 214, 298, 758, 1081, 1650
PmaCI CACGTG 2 cut(s) 124, 220
PmlI CACGTG 2 cut(s) 124, 220
PpsI GAGTC 5 cut(s) 214, 298, 758, 1081, 1650
Ppu21I YACGTR 3 cut(s) 124, 220, 605
PpuMI RGGWCCY 1 cut(s) 1659
PscI ACATGT 1 cut(s) 1283
PshAI GACNNNNGTC 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 1659
Psp6I CCWGG 4 cut(s) 116, 627, 675, 1221
PspCI CACGTG 2 cut(s) 124, 220
PspFI CCCAGC 2 cut(s) 893, 2010
PspGI CCWGG 4 cut(s) 116, 627, 675, 1221
PspN4I GGNNCC 9 cut(s) 19, 354, 765, 784, 884, 885, 1219, 1301, 1627
PspOMI GGGCCC 2 cut(s) 782, 882
PspPPI RGGWCCY 1 cut(s) 1659
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 1182, 1367
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 1 cut(s) 825
RsaNI GTAC 1 cut(s) 824
RseI CAYNNNNRTG 3 cut(s) 53, 428, 1044
Rsr2I CGGWCCG 1 cut(s) 688
RsrII CGGWCCG 1 cut(s) 688
SacII CCGCGG 1 cut(s) 553
SaqAI TTAA 2 cut(s) 270, 1446
Sau3AI GATC 3 cut(s) 964, 1182, 1367
SchI GAGTC 5 cut(s) 215, 299, 759, 1082, 1651
ScrFI CCNGG 5 cut(s) 118, 629, 677, 806, 1223
SduI GDGCHC 6 cut(s) 110, 786, 886, 1041, 1222, 1597
SfaNI GCATC 4 cut(s) 577, 983, 1330, 1914
SfcI CTRYAG 2 cut(s) 1186, 1779
Sfr303I CCGCGG 1 cut(s) 553
SgrAI CRCCGGYG 1 cut(s) 11
SgrBI CCGCGG 1 cut(s) 553
SinI GGWCC 7 cut(s) 658, 679, 688, 772, 1300, 1659, 1765
SmiMI CAYNNNNRTG 3 cut(s) 53, 428, 1044
SnaBI TACGTA 1 cut(s) 605
Sse9I AATT 9 cut(s) 223, 435, 472, 544, 1191, 1705, 1799, 1860, 1998
SseBI AGGCCT 1 cut(s) 1312
SspMI CTAG 3 cut(s) 1155, 1431, 1751
StuI AGGCCT 1 cut(s) 1312
StyD4I CCNGG 5 cut(s) 116, 627, 675, 804, 1221
StyI CCWWGG 2 cut(s) 1277, 1666
TaaI ACNGT 9 cut(s) 22, 154, 188, 383, 683, 763, 1043, 1304, 1885
TaiI ACGT 5 cut(s) 107, 126, 222, 504, 607
TaqI TCGA 2 cut(s) 850, 1985
TaqII GACCGA 1 cut(s) 705
TasI AATT 9 cut(s) 223, 435, 472, 544, 1191, 1705, 1799, 1860, 1998
TatI WGTACW 1 cut(s) 823
TauI GCSGC 5 cut(s) 18, 266, 468, 552, 654
TfiI GAWTC 6 cut(s) 88, 586, 847, 1528, 1696, 1850
Tru1I TTAA 2 cut(s) 270, 1446
Tru9I TTAA 2 cut(s) 270, 1446
TscAI CASTG 5 cut(s) 101, 157, 405, 1686, 2026
TseFI GTSAC 3 cut(s) 215, 233, 1046
TseI GCWGC 5 cut(s) 191, 331, 417, 1545, 1792
Tsp45I GTSAC 3 cut(s) 215, 233, 1046
TspDTI ATGAA 7 cut(s) 392, 866, 970, 1718, 1787, 1845, 1905
TspGWI ACGGA 5 cut(s) 264, 314, 1362, 1705, 1778
TspRI CASTG 5 cut(s) 101, 157, 405, 1686, 2026
Tth111I GACNNNGTC 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 154
VneI GTGCAC 1 cut(s) 106
VpaK11BI GGWCC 7 cut(s) 658, 679, 688, 772, 1300, 1659, 1765
XapI RAATTY 2 cut(s) 223, 435
XbaI TCTAGA 1 cut(s) 1750
XceI RCATGY 1 cut(s) 1287
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 1 cut(s) 1527
XspI CTAG 3 cut(s) 1155, 1431, 1751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.