Rh4CG308300

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000644
Physical Location & Seq
Forward (+)
56992949 .. 56998789
5841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG308300.1

Sequence Viewer

Length: 2067 bp
ATGGCTGACGCCTCCGTCTCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAAGCAGATGCCGTCGCCGGAGGAGATTCTCCCCTGCAACACATGCACCTCCCCCTGGCACGTGTCCTGTCTCTCCGTCCGTCCCGATACTGTGGCCGAGGCTCTGGACTGGGAGTGTCCGGACTGTGCTCCGGCGGCAGATTCCGAGCAGGCTGCTGTGAATTCTGTCGGCGCCAGAGGTGACGGAGGCGACGACGACGGTCTCATCGCCGCTATCAAAGCCCTGGAGGCCGACGAGTCTTTGACGGAGAGAGAAAAGGCCAGGAAACGACAGGCGTTGATGTCCAAAACCGCATTGCTGCCGTCCGATAGCGATGGCGCTGATTCCGAGAAAAAGATGAACGGTGGTAATGACGCACTCCTACGGAGCTTTTGCTGCACCATTTGCATGCATCTTCCTGAGAGACCCGTTACGACACCTTGCGGTCACAATTTCTGCCTGAAATGCTACGACAGATACGTAGGACAAGGAAAACGACAATGTGCAAATTGCCGCCAACCGATTCCGTCGTCTCTGAGAATCAACGAGGTTCTTGTGAGGGCGATTCGTAGAGCGAACGTAGACAAACGCGCCACCGCAGGCGAAGGCCAACGCCCCGTGGCGCATTACCTCCACAACCAGGACCGCCCGGACAAAGCATTCAGAAGCGAGCGAGCGAAGAAGGCTGGAAATGCTAATGCTTCGAGTGGAAGAATATTTGTTACGACGGCTAAGGACCATTTTGGTCCCATAACGGCCGAGTATGACCCAGAGAGGAATGAGGGTGTGTCGGTGGGGAGGACTTGGCAGTATAGGATGGAATGCAGGCAATGGGGGATTCATCGCTCTGTGGTTGCAGGGATTGCGGGGCAGAGTAGGCATGGGGCTCAGTCGGTAGTTTTGTCCGGAGGATATGAAGACGATGAGGACCACGGCGAGTGGTTCATTTATACCGGAAGTGGTGGAAAAGATTTAAGTGGAAATAAACGGACGAACAAGGAGCACAGTAAAGACCAGGAGTTTACGCACATGAATGAGGCGCTGAGGTTAAGTTGCAGAATGGGTTATCCAGTGCGAGTAGTGAGATCCCACAAAGAGAAGCGGTCTTCATATGCGCCTAGAGAAGCAGTGGTGCGATACGATGGGATTTACAGAATTGAAAAATGTTGGCGAAAGAAAGGAACGCAGGGATTTAAGGTATGCAGATACCTTTTCATGAGATGTGATAACGAACCTGCTCCTTGGACATGTGATGTTCATGGGGACCGACCAAGGCCTCTGCCATTTATAAAGGAGTTGAAAGGGGCAACCGATATAACAGAAAGAAAAGGATCTCCATCGTGGGACTACGATGAAGAAAAAGAGTGCTGGTTGTGGAAAAAGCCTCCACCACTTAGCAAGCAACCAGTGGAGGATAGTGGGGATGCAGAGGAGGGGAAGAAAGTAAAAGTGAAGAGAGCTTATATGCAGAGACAGATTATGGAAGAAGAGATCCAGAGAGAGTTTGGCTGTCATATATGTCATAAGGTTTTAACTTCCCCTGTTACAACACCATGCGCTCACAACTTCTGCAAAGCATGCTTAGAAGGTGCCTTTGCTGGTTTGACTTATATAAAAGAGAGGACATGCCATGGAAGAAGAACACTGAGACCACAAAAGAATGTCATGAATTGCCCGCTGTGTTCGACTGACATAGCTGAGTTTCTCCAAAATCTAAAGGTTAATACGGATCTCATGAATGCCATAAAAGACATGCAGCAGAAATTGGAAGATTTGGAAGAGGAAGAGGAAGCTGAAAAGGAAGTAGAAGATCAGGAACAGGAAGAAATTGACAATGACGGTAAAGAGACTGTGGATGAAGCCAAAGAAAGCATCTCACCAGCACCCCACACTGAAACTGCACCGCAAGAAGCTTGTGAGCAAAAGAAACCAACTCGTAAGCGAAAGAAGTCAAACAATGCCGAAAATGCGGTGGATGCTGGGGTAACGGCCAGGAGGAGTAAGAAGAGTAAAATGGCAGTGGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

688

Amino Acids

77.1

Weight (kDa)

6.98

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 144 - 188 1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 145 - 183 1.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 145 - 178 8.3e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 272 - 422 2.9e-52 SAD/SRA domain
zf-RING_UBOX PF13445 516 - 543 7e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1325
AasI GACNNNNNNGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 1279
AccB1I GGYRCC 2 cut(s) 227, 1625
AccI GTMKAC 1 cut(s) 618
AccII CGCG 1 cut(s) 627
AccIII TCCGGA 2 cut(s) 175, 941
AclWI GGATC 4 cut(s) 1116, 1375, 1522, 1773
AcoI YGGCCR 3 cut(s) 150, 792, 2025
AcsI RAATTY 1 cut(s) 217
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 2 cut(s) 9, 228
AfiI CCNNNNNNNGG 2 cut(s) 111, 676
AflIII ACRYGT 2 cut(s) 117, 1283
AgsI TTSAA 2 cut(s) 1196, 1336
AjnI CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2027
AluBI AGCT 5 cut(s) 426, 1496, 1733, 1829, 1949
AluI AGCT 5 cut(s) 426, 1496, 1733, 1829, 1949
Alw21I GWGCWC 2 cut(s) 187, 1041
Alw26I GTCTC 8 cut(s) 22, 131, 263, 454, 573, 1501, 1678, 1877
AlwI GGATC 4 cut(s) 1116, 1375, 1522, 1773
Aor13HI TCCGGA 2 cut(s) 175, 941
AoxI GGCC 7 cut(s) 150, 285, 315, 643, 792, 1310, 2025
ApeKI GCWGC 4 cut(s) 209, 355, 432, 1792
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
AspS9I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 2 cut(s) 248, 1905
AvaII GGWCC 5 cut(s) 679, 772, 782, 964, 1300
BanI GGYRCC 2 cut(s) 227, 1625
BanII GRGCYC 1 cut(s) 925
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 2 cut(s) 960, 1134
Bbv12I GWGCWC 2 cut(s) 187, 1041
BbvCI CCTCAGC 1 cut(s) 1079
BbvI GCAGC 4 cut(s) 196, 342, 419, 1804
BccI CCATC 4 cut(s) 365, 847, 1172, 1381
BceAI ACGGC 7 cut(s) 52, 55, 343, 780, 807, 985, 2040
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2029
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 8 cut(s) 22, 131, 263, 454, 573, 1501, 1678, 1877
BfaI CTAG 1 cut(s) 1155
BfoI RGCGCY 3 cut(s) 231, 378, 1079
BfuAI ACCTGC 1 cut(s) 1279
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1793
BlsI GCNGC 7 cut(s) 193, 211, 268, 357, 434, 551, 1794
Bme1390I CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2029
Bme18I GGWCC 5 cut(s) 679, 772, 782, 964, 1300
BmgT120I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
BmiI GGNNCC 4 cut(s) 229, 784, 1301, 1627
BmrFI CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2029
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 5 cut(s) 54, 457, 1450, 1917, 2002
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 960, 1134
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 2 cut(s) 768, 1079
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 2 cut(s) 118, 517
BsaBI GATNNNNATC 1 cut(s) 1372
BsaHI GRCGYC 2 cut(s) 9, 228
BsaI GGTCTC 3 cut(s) 263, 454, 1678
BsaJI CCNNGG 8 cut(s) 110, 153, 279, 654, 967, 1277, 1307, 1666
BsaWI WCCGGW 3 cut(s) 175, 941, 989
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 676
Bse1I ACTGG 3 cut(s) 170, 1106, 1442
Bse3DI GCAATG 2 cut(s) 350, 872
Bse8I GATNNNNATC 1 cut(s) 1372
BseAI TCCGGA 2 cut(s) 175, 941
BseBI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2029
BseDI CCNNGG 8 cut(s) 110, 153, 279, 654, 967, 1277, 1307, 1666
BseGI GGATG 4 cut(s) 858, 1465, 1897, 2017
BseJI GATNNNNATC 1 cut(s) 1372
BseLI CCNNNNNNNGG 2 cut(s) 111, 676
BseMI GCAATG 2 cut(s) 350, 872
BseMII CTCAG 6 cut(s) 447, 563, 938, 1070, 1673, 1725
BseNI ACTGG 3 cut(s) 170, 1106, 1442
BseRI GAGGAG 3 cut(s) 92, 1481, 2047
BseX3I CGGCCG 1 cut(s) 792
BseXI GCAGC 4 cut(s) 196, 342, 419, 1804
BseYI CCCAGC 1 cut(s) 2015
BsgI GTGCAG 2 cut(s) 418, 1920
Bsh1236I CGCG 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 7 cut(s) 152, 287, 317, 645, 794, 1312, 2027
BshNI GGYRCC 2 cut(s) 227, 1625
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 2 cut(s) 187, 1041
BsiSI CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
BslFI GGGAC 4 cut(s) 123, 768, 1313, 1394
BslI CCNNNNNNNGG 2 cut(s) 111, 676
BsmAI GTCTC 8 cut(s) 22, 131, 263, 454, 573, 1501, 1678, 1877
BsmBI CGTCTC 2 cut(s) 22, 573
BsmFI GGGAC 4 cut(s) 123, 768, 1313, 1394
BsmI GAATGC 3 cut(s) 695, 863, 1780
BsnI GGCC 7 cut(s) 152, 287, 317, 645, 794, 1312, 2027
Bso31I GGTCTC 3 cut(s) 263, 454, 1678
Bsp1286I GDGCHC 3 cut(s) 187, 925, 1041
Bsp13I TCCGGA 2 cut(s) 175, 941
Bsp143I GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
Bsp19I CCATGG 1 cut(s) 1666
BspANI GGCC 7 cut(s) 152, 287, 317, 645, 794, 1312, 2027
BspCNI CTCAG 6 cut(s) 448, 564, 937, 1071, 1674, 1726
BspEI TCCGGA 2 cut(s) 175, 941
BspFNI CGCG 1 cut(s) 627
BspHI TCATGA 3 cut(s) 1251, 1701, 1770
BspLI GGNNCC 4 cut(s) 229, 784, 1301, 1627
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 4 cut(s) 1116, 1375, 1522, 1773
BspT107I GGYRCC 2 cut(s) 227, 1625
BspTNI GGTCTC 3 cut(s) 263, 454, 1678
BsrDI GCAATG 2 cut(s) 350, 872
BsrI ACTGG 3 cut(s) 170, 1106, 1442
BssECI CCNNGG 8 cut(s) 110, 153, 279, 654, 967, 1277, 1307, 1666
BssMI GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
BssNI GRCGYC 2 cut(s) 9, 228
BssT1I CCWWGG 3 cut(s) 1277, 1307, 1666
Bst2UI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2029
Bst4CI ACNGT 7 cut(s) 148, 182, 257, 401, 1043, 1877, 1888
Bst6I CTCTTC 5 cut(s) 1484, 1518, 1809, 1815, 2036
BstACI GRCGYC 2 cut(s) 9, 228
BstAPI GCANNNNNTGC 5 cut(s) 54, 99, 441, 899, 1614
BstBAI YACGTR 2 cut(s) 118, 517
BstDEI CTNAG 9 cut(s) 456, 572, 768, 924, 1079, 1430, 1618, 1682, 1734
BstDSI CCRYGG 3 cut(s) 654, 967, 1666
BstF5I GGATG 4 cut(s) 858, 1465, 1897, 2017
BstFNI CGCG 1 cut(s) 627
BstH2I RGCGCY 3 cut(s) 231, 378, 1079
BstHHI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
BstKTI GATC 5 cut(s) 1124, 1370, 1530, 1768, 1849
BstMAI GTCTC 8 cut(s) 22, 131, 263, 454, 573, 1501, 1678, 1877
BstMBI GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
BstMCI CGRYCG 1 cut(s) 795
BstNI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2029
BstNSI RCATGY 6 cut(s) 102, 448, 1287, 1617, 1665, 1792
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 7 cut(s) 110, 279, 317, 675, 684, 1050, 2027
BstSNI TACGTA 1 cut(s) 517
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 4 cut(s) 196, 342, 419, 1804
BstV2I GAAGAC 2 cut(s) 960, 1134
BstX2I RGATCY 4 cut(s) 1121, 1367, 1527, 1765
BstYI RGATCY 4 cut(s) 1121, 1367, 1527, 1765
BstZI CGGCCG 1 cut(s) 792
BsuRI GGCC 7 cut(s) 152, 287, 317, 645, 794, 1312, 2027
BtgI CCRYGG 3 cut(s) 654, 967, 1666
BtgZI GCGATG 3 cut(s) 247, 384, 863
BtsCI GGATG 4 cut(s) 858, 1465, 1897, 2017
BtsI GCAGTG 2 cut(s) 1170, 2061
BtsIMutI CAGTG 6 cut(s) 1113, 1170, 1449, 1679, 1926, 2061
BveI ACCTGC 1 cut(s) 1279
CciI TCATGA 3 cut(s) 1251, 1701, 1770
CfoI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
Cfr13I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
CseI GACGC 2 cut(s) 17, 419
DdeI CTNAG 9 cut(s) 456, 572, 768, 924, 1079, 1430, 1618, 1682, 1734
DinI GGCGCC 1 cut(s) 229
DpnI GATC 5 cut(s) 1123, 1369, 1529, 1767, 1848
DpnII GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 3 cut(s) 150, 792, 2025
EagI CGGCCG 1 cut(s) 792
Eam1104I CTCTTC 5 cut(s) 1484, 1518, 1809, 1815, 2036
EarI CTCTTC 5 cut(s) 1484, 1518, 1809, 1815, 2036
EclXI CGGCCG 1 cut(s) 792
Eco105I TACGTA 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 1277, 1307, 1666
Eco147I AGGCCT 1 cut(s) 1312
Eco24I GRGCYC 1 cut(s) 925
Eco31I GGTCTC 3 cut(s) 263, 454, 1678
Eco47I GGWCC 5 cut(s) 679, 772, 782, 964, 1300
Eco52I CGGCCG 1 cut(s) 792
Eco72I CACGTG 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 217
EcoRII CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2027
EcoT14I CCWWGG 3 cut(s) 1277, 1307, 1666
EcoT22I ATGCAT 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 925
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 3 cut(s) 1277, 1307, 1666
Esp3I CGTCTC 2 cut(s) 22, 573
FaqI GGGAC 4 cut(s) 123, 768, 1313, 1394
FauI CCCGC 2 cut(s) 895, 1719
FauNDI CATATG 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1793
FokI GGATG 4 cut(s) 865, 1472, 1904, 2024
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1793
FspBI CTAG 1 cut(s) 1155
GlaI GCGC 7 cut(s) 229, 376, 628, 660, 1077, 1152, 1594
GluI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1793
GsaI CCCAGC 1 cut(s) 2019
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 3 cut(s) 231, 378, 1079
HaeIII GGCC 7 cut(s) 152, 287, 317, 645, 794, 1312, 2027
HapII CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
HgaI GACGC 2 cut(s) 17, 419
HhaI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
Hin1I GRCGYC 2 cut(s) 9, 228
Hin6I GCGC 7 cut(s) 228, 375, 627, 659, 1076, 1151, 1593
HinP1I GCGC 7 cut(s) 228, 375, 627, 659, 1076, 1151, 1593
HindIII AAGCTT 1 cut(s) 1947
HinfI GANTC 8 cut(s) 82, 197, 293, 380, 559, 576, 601, 874
HpaII CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
HphI GGTGA 2 cut(s) 248, 1905
Hpy166II GTNNAC 2 cut(s) 619, 1059
Hpy188I TCNGA 6 cut(s) 202, 364, 385, 573, 701, 2066
Hpy8I GTNNAC 2 cut(s) 619, 1059
Hpy99I CGWCG 8 cut(s) 41, 73, 251, 254, 257, 293, 568, 766
HpyAV CCTTC 3 cut(s) 635, 712, 1616
HpyCH4III ACNGT 7 cut(s) 148, 182, 257, 401, 1043, 1877, 1888
HpyCH4IV ACGT 3 cut(s) 117, 516, 615
HpyF3I CTNAG 9 cut(s) 456, 572, 768, 924, 1079, 1430, 1618, 1682, 1734
HpySE526I ACGT 3 cut(s) 117, 516, 615
Hsp92I GRCGYC 2 cut(s) 9, 228
HspAI GCGC 7 cut(s) 228, 375, 627, 659, 1076, 1151, 1593
KasI GGCGCC 1 cut(s) 227
Kpn2I TCCGGA 2 cut(s) 175, 941
Kzo9I GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
LmnI GCTCC 4 cut(s) 190, 423, 1036, 1279
Lsp1109I GCAGC 4 cut(s) 196, 342, 419, 1804
LweI GCATC 5 cut(s) 54, 457, 1450, 1917, 2002
MaeI CTAG 1 cut(s) 1155
MaeII ACGT 3 cut(s) 117, 516, 615
MaeIII GTNAC 6 cut(s) 236, 466, 482, 757, 1579, 2020
MalI GATC 5 cut(s) 1123, 1369, 1529, 1767, 1848
MboI GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
MflI RGATCY 4 cut(s) 1121, 1367, 1527, 1765
MhlI GDGCHC 3 cut(s) 187, 925, 1041
MluCI AATT 7 cut(s) 217, 487, 544, 1191, 1705, 1799, 1863
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 450
MroI TCCGGA 2 cut(s) 175, 941
MseI TTAA 5 cut(s) 1010, 1085, 1230, 1568, 1758
MslI CAYNNNNRTG 3 cut(s) 47, 443, 1068
MspA1I CMGCKG 1 cut(s) 1714
MspI CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
MspR9I CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2029
Mva1269I GAATGC 3 cut(s) 695, 863, 1780
MvaI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2029
MvnI CGCG 1 cut(s) 627
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 1666
NdeI CATATG 1 cut(s) 1147
NdeII GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
NlaIV GGNNCC 4 cut(s) 229, 784, 1301, 1627
NmeAIII GCCGAG 2 cut(s) 178, 820
NmuCI GTSAC 2 cut(s) 236, 482
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 6 cut(s) 102, 448, 1287, 1617, 1665, 1792
PaeI GCATGC 2 cut(s) 448, 1617
PagI TCATGA 3 cut(s) 1251, 1701, 1770
PceI AGGCCT 1 cut(s) 1312
PciI ACATGT 1 cut(s) 1283
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 513
PctI GAATGC 3 cut(s) 695, 863, 1780
PfeI GAWTC 7 cut(s) 82, 197, 380, 559, 576, 601, 874
PkrI GCNGC 7 cut(s) 193, 211, 268, 357, 434, 551, 1794
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 231
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 2 cut(s) 118, 517
PscI ACATGT 1 cut(s) 1283
PshAI GACNNNNGTC 1 cut(s) 255
PsiI TTATAA 1 cut(s) 1325
Psp6I CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2027
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 2015
PspGI CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2027
PspN4I GGNNCC 4 cut(s) 229, 784, 1301, 1627
PspPI GGNCC 5 cut(s) 679, 772, 782, 964, 1300
PsuI RGATCY 4 cut(s) 1121, 1367, 1527, 1765
RseI CAYNNNNRTG 3 cut(s) 47, 443, 1068
SaqAI TTAA 5 cut(s) 1010, 1085, 1230, 1568, 1758
SatI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1793
Sau3AI GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
Sau96I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2029
SduI GDGCHC 3 cut(s) 187, 925, 1041
SfaNI GCATC 5 cut(s) 54, 457, 1450, 1917, 2002
SfoI GGCGCC 1 cut(s) 229
SinI GGWCC 5 cut(s) 679, 772, 782, 964, 1300
SmiMI CAYNNNNRTG 3 cut(s) 47, 443, 1068
SnaBI TACGTA 1 cut(s) 517
SphI GCATGC 2 cut(s) 448, 1617
Sse9I AATT 7 cut(s) 217, 487, 544, 1191, 1705, 1799, 1863
SseBI AGGCCT 1 cut(s) 1312
SspDI GGCGCC 1 cut(s) 227
SspI AATATT 1 cut(s) 753
SspMI CTAG 1 cut(s) 1155
StuI AGGCCT 1 cut(s) 1312
StyD4I CCNGG 7 cut(s) 110, 279, 317, 675, 684, 1050, 2027
StyI CCWWGG 3 cut(s) 1277, 1307, 1666
TaaI ACNGT 7 cut(s) 148, 182, 257, 401, 1043, 1877, 1888
TaiI ACGT 3 cut(s) 120, 519, 618
TaqI TCGA 2 cut(s) 740, 1721
TaqII GACCGA 1 cut(s) 1317
TasI AATT 7 cut(s) 217, 487, 544, 1191, 1705, 1799, 1863
TauI GCSGC 3 cut(s) 194, 269, 552
TfiI GAWTC 7 cut(s) 82, 197, 380, 559, 576, 601, 874
Tru1I TTAA 5 cut(s) 1010, 1085, 1230, 1568, 1758
Tru9I TTAA 5 cut(s) 1010, 1085, 1230, 1568, 1758
TscAI CASTG 6 cut(s) 1113, 1170, 1449, 1686, 1933, 2061
TseFI GTSAC 2 cut(s) 236, 482
TseI GCWGC 4 cut(s) 209, 355, 432, 1792
Tsp45I GTSAC 2 cut(s) 236, 482
TspRI CASTG 6 cut(s) 1113, 1170, 1449, 1686, 1933, 2061
VpaK11BI GGWCC 5 cut(s) 679, 772, 782, 964, 1300
XapI RAATTY 1 cut(s) 217
XceI RCATGY 6 cut(s) 102, 448, 1287, 1617, 1665, 1792
XcmI CCANNNNNNNNNTGG 1 cut(s) 1538
XmiI GTMKAC 1 cut(s) 618
XspI CTAG 1 cut(s) 1155
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.