Rroxscaffold_2G00112620

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000644
Physical Location & Seq
Forward (+)
37893825 .. 37907649
13825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112620.1

Sequence Viewer

Length: 255 bp
ATGGAAGAGATTCTGACAGGGTTTAGCTGCCTCATATGTCAGAAGGTTTTGACTACCCCAATTACGATACCATGTACTCATAACTTCTGTAAAGCTTGCATGGAAGGTGCCTTTGCTGGTATAAGTTATATAAAGAGAGGGACCTGCCAGGGTAAAAGAACACTGCCACAGAAACTTTCTTCGAGTGTTGACCTGAAGTTTGACCGTCGGCTCGAGGAGGAAGGGGGTACCTGCAGAAAACTCTCCGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

84

Amino Acids

9.28

Weight (kDa)

8.53

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_UBOX PF13445 10 - 37 8.5e-08 RING-type zinc-finger
zf-C3HC4_2 PF13923 10 - 35 6.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 10 - 36 6.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 152, 239
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 2 cut(s) 107, 227
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 76, 229
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 27, 95
AluI AGCT 2 cut(s) 27, 95
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp700I GAANNNNTTC 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 2 cut(s) 107, 227
BbvI GCAGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 232
BfuAI ACCTGC 2 cut(s) 152, 239
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 3 cut(s) 109, 142, 229
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 14
BshNI GGYRCC 2 cut(s) 107, 227
BsiHKCI CYCGRG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 212
BspLI GGNNCC 3 cut(s) 109, 142, 229
BspMAI CTGCAG 1 cut(s) 236
BspMI ACCTGC 2 cut(s) 152, 239
BspT107I GGYRCC 2 cut(s) 107, 227
BssECI CCNNGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
BveI ACCTGC 2 cut(s) 152, 239
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 75, 228
CviAII CATG 2 cut(s) 72, 100
CviJI RGCY 3 cut(s) 27, 95, 211
CviKI_1 RGCY 3 cut(s) 27, 95, 211
CviQI GTAC 2 cut(s) 75, 228
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 75, 103
FaiI YATR 8 cut(s) 35, 37, 73, 81, 101, 122, 129, 131
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 71, 99
FauNDI CATATG 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 75, 103
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 15, 42, 247
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 3 cut(s) 37, 98, 215
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 99, 234
Hsp92II CATG 2 cut(s) 75, 103
KpnI GGTACC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 3, 102, 134, 157, 161, 206, 244
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 17, 171
MluCI AATT 1 cut(s) 60
MnlI CCTC 4 cut(s) 41, 131, 208, 211
MroXI GAANNNNTTC 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NdeI CATATG 1 cut(s) 35
NlaIII CATG 2 cut(s) 75, 103
NlaIV GGNNCC 3 cut(s) 109, 142, 229
PaeR7I CTCGAG 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 109, 142, 229
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 212
PstI CTGCAG 1 cut(s) 236
RsaI GTAC 2 cut(s) 76, 229
RsaNI GTAC 2 cut(s) 75, 228
SatI GCNGC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 149
SetI ASST 7 cut(s) 29, 48, 97, 109, 146, 195, 233
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 182, 213
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 27
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.