Rroxscaffold_6G00391750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000644
Physical Location & Seq
Forward (+)
10448751 .. 10465218
16468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391750.1

Sequence Viewer

Length: 585 bp
ATGTTCTTCCTCGACGCCGGCTCCAACTCGACTCCGGCAGATCGAATCCTCGCAAGGGAGCTTAGTGAACGAATCAACGCTTTGACACCGAAATTTGATTTCAATGCGGGTGAACCTTGTCGGTCATCATGTTCCTACCCCAACTCCGACTTCGACTCCCTTCGATTTTCTCCCCCAATGACTGACTTGATTGTTACAAATCCAACCACGGTCTTCTCGCCAACCCAACATCGAAGATCGCATGTTGATCGTGCTCGTTCGTTCTCACACTTCCGGTCCGATTTGAGTCAACCCACCGCCATGTGGATTCGGCTCCTCTCAATTGACCAAACCCCATGCCCCGCATCCTTCCTCTCTCTCTGCACGCACCGTGGAGGCCTTGAATCTCCGGCCACCGATTTCACAACACAATCACCATCTCATGAACAAGAAACCAAATTTCCAACCAAAAACCCAAACCATGAGGCCAAGCCTTTTCTGTTCTTCAAATCGGCTAGTTCGATCGGAAACCGGACTCCATCATGTTCTTCCCTCGACGCCCGCTCCAACTCGACTCCGGGATCGAATCCTCGCAAGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

8.71

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 543
AciI CCGC 4 cut(s) 107, 297, 342, 541
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 2 cut(s) 92, 437
AcyI GRCGYC 2 cut(s) 15, 537
AfiI CCNNNNNNNGG 3 cut(s) 55, 303, 575
AgsI TTSAA 3 cut(s) 103, 383, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 2 cut(s) 61, 581
AluI AGCT 2 cut(s) 61, 581
Alw21I GWGCWC 1 cut(s) 256
AlwI GGATC 1 cut(s) 568
AoxI GGCC 3 cut(s) 376, 390, 465
ApoI RAATTY 2 cut(s) 92, 437
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 122, 405
AvaII GGWCC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 2 cut(s) 424, 526
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BcnI CCSGG 1 cut(s) 558
BfaI CTAG 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 22, 314
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 558
BsaHI GRCGYC 2 cut(s) 15, 537
BsaJI CCNNGG 2 cut(s) 207, 370
BsaWI WCCGGW 2 cut(s) 273, 510
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 128, 140, 158, 170, 527, 557
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 303, 575
Bse118I RCCGGY 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 207, 370
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 3 cut(s) 55, 303, 575
BseRI GAGGAG 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 3 cut(s) 378, 392, 467
BsiEI CGRYCG 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 6 cut(s) 18, 35, 274, 389, 511, 557
BslI CCNNNNNNNGG 3 cut(s) 55, 303, 575
BsnI GGCC 3 cut(s) 378, 392, 467
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 5 cut(s) 40, 236, 247, 501, 560
BspACI CCGC 4 cut(s) 107, 297, 342, 541
BspANI GGCC 3 cut(s) 378, 392, 467
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 22, 314
BspPI GGATC 1 cut(s) 568
BsrBI CCGCTC 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 207, 370
BssMI GATC 5 cut(s) 40, 236, 247, 501, 560
BssNI GRCGYC 2 cut(s) 15, 537
Bst4CI ACNGT 2 cut(s) 211, 371
BstACI GRCGYC 2 cut(s) 15, 537
BstC8I GCNNGC 3 cut(s) 19, 365, 541
BstDEI CTNAG 2 cut(s) 62, 582
BstDSI CCRYGG 2 cut(s) 207, 370
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 5 cut(s) 43, 239, 250, 504, 563
BstMBI GATC 5 cut(s) 40, 236, 247, 501, 560
BstMCI CGRYCG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 3 cut(s) 378, 392, 467
BtgI CCRYGG 2 cut(s) 207, 370
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 19, 365, 541
CciI TCATGA 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 276
CpoI CGGWCCG 1 cut(s) 276
CseI GACGC 2 cut(s) 23, 545
CspI CGGWCCG 1 cut(s) 276
CviAII CATG 7 cut(s) 129, 242, 301, 336, 422, 461, 522
CviJI RGCY 9 cut(s) 21, 61, 313, 378, 392, 467, 472, 494, 581
CviKI_1 RGCY 9 cut(s) 21, 61, 313, 378, 392, 467, 472, 494, 581
DdeI CTNAG 2 cut(s) 62, 582
DpnI GATC 5 cut(s) 42, 238, 249, 503, 562
DpnII GATC 5 cut(s) 40, 236, 247, 501, 560
EaeI YGGCCR 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 276
FaeI CATG 7 cut(s) 132, 245, 304, 339, 425, 464, 525
FaiI YATR 7 cut(s) 130, 243, 302, 337, 423, 462, 523
FatI CATG 7 cut(s) 128, 241, 300, 335, 421, 460, 521
FauI CCCGC 3 cut(s) 100, 349, 548
FokI GGATG 1 cut(s) 331
FspBI CTAG 1 cut(s) 495
HaeIII GGCC 3 cut(s) 378, 392, 467
HapII CCGG 6 cut(s) 18, 35, 274, 389, 511, 557
HgaI GACGC 2 cut(s) 23, 545
Hin1I GRCGYC 2 cut(s) 15, 537
Hin1II CATG 7 cut(s) 132, 245, 304, 339, 425, 464, 525
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HpaII CCGG 6 cut(s) 18, 35, 274, 389, 511, 557
HphI GGTGA 2 cut(s) 122, 405
Hpy166II GTNNAC 3 cut(s) 68, 113, 290
Hpy188I TCNGA 3 cut(s) 148, 280, 506
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 3 cut(s) 68, 113, 290
Hpy99I CGWCG 2 cut(s) 17, 539
HpyAV CCTTC 2 cut(s) 170, 358
HpyCH4III ACNGT 2 cut(s) 211, 371
HpyCH4V TGCA 1 cut(s) 363
HpyF3I CTNAG 2 cut(s) 62, 582
Hsp92I GRCGYC 2 cut(s) 15, 537
Hsp92II CATG 7 cut(s) 132, 245, 304, 339, 425, 464, 525
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 40, 236, 247, 501, 560
LmnI GCTCC 5 cut(s) 26, 58, 318, 548, 578
LpnPI CCDG 6 cut(s) 31, 48, 287, 402, 524, 570
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 193
MalI GATC 5 cut(s) 42, 238, 249, 503, 562
MbiI CCGCTC 1 cut(s) 543
MboI GATC 5 cut(s) 40, 236, 247, 501, 560
MboII GAAGA 4 cut(s) 205, 246, 475, 519
MfeI CAATTG 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 92, 321, 437
MlyI GAGTC 5 cut(s) 25, 149, 295, 508, 547
MmeI TCCRAC 5 cut(s) 48, 171, 227, 467, 570
MnlI CCTC 8 cut(s) 20, 59, 326, 362, 368, 457, 542, 579
MroNI GCCGGC 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 6 cut(s) 18, 35, 274, 389, 511, 557
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 321
NaeI GCCGGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 558
NdeII GATC 5 cut(s) 40, 236, 247, 501, 560
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 7 cut(s) 132, 245, 304, 339, 425, 464, 525
NlaIV GGNNCC 2 cut(s) 22, 314
NspI RCATGY 1 cut(s) 245
PagI TCATGA 1 cut(s) 421
PceI AGGCCT 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PdiI GCCGGC 1 cut(s) 19
PfeI GAWTC 5 cut(s) 45, 72, 307, 383, 565
PfoI TCCNGGA 1 cut(s) 556
Ple19I CGATCG 1 cut(s) 504
PleI GAGTC 5 cut(s) 25, 149, 294, 508, 547
PpsI GAGTC 5 cut(s) 25, 149, 294, 508, 547
PspN4I GGNNCC 2 cut(s) 22, 314
PspPI GGNCC 1 cut(s) 276
PvuI CGATCG 1 cut(s) 504
RseI CAYNNNNRTG 1 cut(s) 299
Rsr2I CGGWCCG 1 cut(s) 276
RsrII CGGWCCG 1 cut(s) 276
Sau3AI GATC 5 cut(s) 40, 236, 247, 501, 560
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 5 cut(s) 25, 149, 295, 508, 547
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 256
SetI ASST 3 cut(s) 63, 118, 583
SfaNI GCATC 1 cut(s) 353
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 3 cut(s) 92, 321, 437
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 4 cut(s) 107, 297, 342, 541
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 211, 371
TaqII GACCGA 1 cut(s) 111
TasI AATT 3 cut(s) 92, 321, 437
TfiI GAWTC 5 cut(s) 45, 72, 307, 383, 565
TspDTI ATGAA 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 92, 437
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.