RchiOBHm_Chr4g0428861

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000644
Physical Location & Seq
Forward (+)
53785985 .. 53789920
3936 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39771

Sequence Viewer

Length: 2070 bp
ATGGCTGACGTCGACGTCTCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAATCAGATGCCGTCGCCGGAGGAGATTCTCCCCTGCAACACATGCACCTCCCCCTGGCACGTGTCCTGTCTCTCTGTCCGTCCCGATACTGTGGCCGAGGCTCTGGACTGGGAGTGTCCGGACTGTGCTCCGGCGGCCGATTCCGAGCAGGCTGCTGTGAATCCTGTCGGCGGCAGAGGTGACGGAGGCGACGACGGTCTCATAGCCGCTATCAAAGCCCTGGAGGCCGACGAGTCATTGACGGAGAGAGAAAAGGCCAGGAAACGACAGGCGTTGATGTCCAAAACCGCATTGCTGCCGTCCGATAGCGATGGCGCAGATTCCGAGAAAAAGATGAACGGTGGTAATGACGCACTCCTACGGAGCTTTTGCTGCACGATTTGCATGCATCTTCCTGAGAGACCCGTTACGACACCTTGCGGTCACAATTTCTGCCTGAAATGCTACGACAGATACGTAGCACAAGGAAAACGACAATGTGCAAATTGCCGCCAACCGATTCCACCGTCTCTGAGAATCAACGAGGTTCTTGTGAGGGCGATTCGTAGAGCGAACGTAGACAAACGCGCCACCGCAGGCGACGGCCAACGCCCCGTGGCGCATTACCTTCACAACCAGGACCGCCCGGACAAAGCATTCAGAAGCGAGCGAGCGAAGAAGGCTGGAAATGCTAATGCCTCGAGTGGAAGAATATTTGTTACGACTGCTAAGGACCATTTTGGTCCCATAACGGCCGAGTATGACCCAGAGAGGAATGAGGGTGTGTTGGTGGGGAGGACTTGGCAGTATAGGATGGAATGCAGGCAATGGGGGATTCATCGCTCTGTGGTTGCAGGGATTTCGGGGCAGTGTAGGCATGGGGCTCAGTCGGTAGTTTTGTCCGGAGGATATGAAGACGATGAGGACCACGGCGAGTGGTTCATTTATACCGGAAGTGGCGGAAAAGATTTAAGTGGAAATAAACGGACGAACAAAGAACACAGTAAAGACCAGGAGTTTACGCACATGAATGAGGCGCTGAGGTTAAGTTGCAGAATGGGTTATCCAGTGCGAGTAGTGAGATCCCACAAAGAGAAGCGGTCTTCATATGCGCCTAGAGAAGCAGTGGTGCGATACGATGGGATTTACAGAATTGAAAAATGTTGGCGAAAGAAAGGAACGCAGGGATTTAAGGTATGCAGATACCTTTTCATGAGATGTGATAACGAACCTGCTCCTTGGACATGTGATGTTCATGGGGACCGACCAAGGCCTCTGCCATTTATAAAGGAGTTGAAAGGGGCAACCGATATAACAGAAAGAAAAGGATCTCCATCGTGGGACTACGATGAAGAAAAAGAGTGCTGGTTGTGGAAAAAGCCTCCACCACTTAGCAAGCAACCAGTGGAGGATAGTGGGGATGCAGAGGAGGGGAAGAAAGTAAAAGTGAAGAGAGCTTATATGCAGAGACAGATTATGGAAGAAGAGATCCAGAGAGAGTTTGGCTGTCATATATGTCATAAGGTTTTGACTTCCCCTGTTACAACACCATGCGCTCACAACTTCTGCAAAGCATGCTTAGAAGGTGCCTTTGCTGGTTTGACTTATATAAAAGAGAGGACATGCCATGGAAGAAGAACACTGAGACCACAAAAGAATGTCATGAATTGCCCGCTGTGTTCGACTGACATAGCTGAGTTTCTCCAAAATCTAAAGGTTAATACGGATCTCATGAATGCCATAGAAGACATGCAGCAGAAATTGGAAGATTTGGAAGAGGAAGAGGAAGCTGAAAAGGAAGTAGAAGATCAGGAACAGGAAGAAATTGACAATGACGGTAAAGAGACTGTGGATGAAGCCAAAGAAAGCATCTCACCAGCACCCCAGACTGAAACTACACCGCAAGAAGCTTGTGAGCAAAAGAAGCCAACTCGTAAGCGAAAGAAGTCAAACAATGCCGAAAATGCGGTGGATGGTCATGCTGGGGTAACGGCCAGGAGGAGTAAGAAGAGTAAAATGGCAGTGGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

689

Amino Acids

77.3

Weight (kDa)

6.56

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 143 - 186 3.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 144 - 182 1.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 144 - 182 5.6e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 271 - 421 1.7e-51 SAD/SRA domain
zf-RING_UBOX PF13445 515 - 542 7e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
AasI GACNNNNNNGTC 1 cut(s) 14
AatII GACGTC 2 cut(s) 12, 18
Acc36I ACCTGC 1 cut(s) 1276
AccB1I GGYRCC 1 cut(s) 1622
AccI GTMKAC 2 cut(s) 12, 615
AccII CGCG 1 cut(s) 624
AccIII TCCGGA 2 cut(s) 175, 938
AclWI GGATC 4 cut(s) 1113, 1372, 1519, 1770
AcoI YGGCCR 5 cut(s) 150, 192, 640, 789, 2028
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 2 cut(s) 9, 15
AfiI CCNNNNNNNGG 2 cut(s) 111, 227
AflIII ACRYGT 2 cut(s) 117, 1280
AgsI TTSAA 2 cut(s) 1193, 1333
AjnI CCWGG 6 cut(s) 110, 276, 314, 672, 1047, 2030
AluBI AGCT 5 cut(s) 423, 1493, 1730, 1826, 1946
AluI AGCT 5 cut(s) 423, 1493, 1730, 1826, 1946
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 8 cut(s) 22, 131, 260, 451, 570, 1498, 1675, 1874
AlwI GGATC 4 cut(s) 1113, 1372, 1519, 1770
Ama87I CYCGRG 1 cut(s) 736
Aor13HI TCCGGA 2 cut(s) 175, 938
AoxI GGCC 8 cut(s) 150, 192, 282, 312, 640, 789, 1307, 2028
ApeKI GCWGC 4 cut(s) 209, 352, 429, 1789
AspLEI GCGC 6 cut(s) 374, 626, 658, 1075, 1150, 1592
AspS9I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 248, 1902
AvaI CYCGRG 1 cut(s) 736
AvaII GGWCC 5 cut(s) 676, 769, 779, 961, 1297
BanI GGYRCC 1 cut(s) 1622
BanII GRGCYC 1 cut(s) 922
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 3 cut(s) 957, 1131, 1788
Bbv12I GWGCWC 1 cut(s) 187
BbvCI CCTCAGC 1 cut(s) 1076
BbvI GCAGC 4 cut(s) 196, 339, 416, 1801
BccI CCATC 5 cut(s) 362, 844, 1169, 1378, 2003
BceAI ACGGC 7 cut(s) 52, 55, 340, 655, 804, 982, 2043
BcgI CGANNNNNNTGC 6 cut(s) 191, 225, 424, 458, 879, 913
BciT130I CCWGG 6 cut(s) 112, 278, 316, 674, 1049, 2032
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 8 cut(s) 22, 131, 260, 451, 570, 1498, 1675, 1874
BfaI CTAG 1 cut(s) 1152
BfoI RGCGCY 1 cut(s) 1076
BfuAI ACCTGC 1 cut(s) 1276
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 8 cut(s) 192, 210, 229, 264, 353, 430, 547, 1790
BlsI GCNGC 8 cut(s) 193, 211, 230, 265, 354, 431, 548, 1791
Bme1390I CCNGG 7 cut(s) 112, 278, 316, 674, 683, 1049, 2032
Bme18I GGWCC 5 cut(s) 676, 769, 779, 961, 1297
BmeT110I CYCGRG 1 cut(s) 736
BmgT120I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
BmiI GGNNCC 3 cut(s) 781, 1298, 1624
BmrFI CCNGG 7 cut(s) 112, 278, 316, 674, 683, 1049, 2032
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 4 cut(s) 54, 454, 1447, 1914
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 252
BpiI GAAGAC 3 cut(s) 957, 1131, 1788
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 2 cut(s) 765, 1076
BpuMI CCSGG 1 cut(s) 683
BsaAI YACGTR 2 cut(s) 118, 514
BsaBI GATNNNNATC 1 cut(s) 1369
BsaHI GRCGYC 2 cut(s) 9, 15
BsaI GGTCTC 3 cut(s) 260, 451, 1675
BsaJI CCNNGG 8 cut(s) 110, 153, 276, 651, 964, 1274, 1304, 1663
BsaWI WCCGGW 3 cut(s) 175, 938, 986
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 227
Bse1I ACTGG 3 cut(s) 170, 1103, 1439
Bse3DI GCAATG 2 cut(s) 347, 869
Bse8I GATNNNNATC 1 cut(s) 1369
BseAI TCCGGA 2 cut(s) 175, 938
BseBI CCWGG 6 cut(s) 112, 278, 316, 674, 1049, 2032
BseDI CCNNGG 8 cut(s) 110, 153, 276, 651, 964, 1274, 1304, 1663
BseGI GGATG 4 cut(s) 855, 1462, 1894, 2014
BseJI GATNNNNATC 1 cut(s) 1369
BseLI CCNNNNNNNGG 2 cut(s) 111, 227
BseMI GCAATG 2 cut(s) 347, 869
BseMII CTCAG 6 cut(s) 444, 560, 935, 1067, 1670, 1722
BseNI ACTGG 3 cut(s) 170, 1103, 1439
BseRI GAGGAG 3 cut(s) 92, 1478, 2050
BseX3I CGGCCG 2 cut(s) 192, 789
BseXI GCAGC 4 cut(s) 196, 339, 416, 1801
BseYI CCCAGC 1 cut(s) 2018
BsgI GTGCAG 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 624
Bsh1285I CGRYCG 2 cut(s) 195, 792
BshFI GGCC 8 cut(s) 152, 194, 284, 314, 642, 791, 1309, 2030
BshNI GGYRCC 1 cut(s) 1622
BsiEI CGRYCG 2 cut(s) 195, 792
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 6 cut(s) 74, 176, 188, 683, 939, 987
BslFI GGGAC 4 cut(s) 123, 765, 1310, 1391
BslI CCNNNNNNNGG 2 cut(s) 111, 227
BsmAI GTCTC 8 cut(s) 22, 131, 260, 451, 570, 1498, 1675, 1874
BsmBI CGTCTC 2 cut(s) 22, 570
BsmFI GGGAC 4 cut(s) 123, 765, 1310, 1391
BsmI GAATGC 3 cut(s) 692, 860, 1777
BsnI GGCC 8 cut(s) 152, 194, 284, 314, 642, 791, 1309, 2030
Bso31I GGTCTC 3 cut(s) 260, 451, 1675
BsoBI CYCGRG 1 cut(s) 736
Bsp1286I GDGCHC 2 cut(s) 187, 922
Bsp13I TCCGGA 2 cut(s) 175, 938
Bsp143I GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
Bsp19I CCATGG 1 cut(s) 1663
BspANI GGCC 8 cut(s) 152, 194, 284, 314, 642, 791, 1309, 2030
BspCNI CTCAG 6 cut(s) 445, 561, 934, 1068, 1671, 1723
BspEI TCCGGA 2 cut(s) 175, 938
BspFNI CGCG 1 cut(s) 624
BspHI TCATGA 3 cut(s) 1248, 1698, 1767
BspLI GGNNCC 3 cut(s) 781, 1298, 1624
BspMI ACCTGC 1 cut(s) 1276
BspPI GGATC 4 cut(s) 1113, 1372, 1519, 1770
BspT107I GGYRCC 1 cut(s) 1622
BspTNI GGTCTC 3 cut(s) 260, 451, 1675
BsrDI GCAATG 2 cut(s) 347, 869
BsrI ACTGG 3 cut(s) 170, 1103, 1439
BssECI CCNNGG 8 cut(s) 110, 153, 276, 651, 964, 1274, 1304, 1663
BssMI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
BssNI GRCGYC 2 cut(s) 9, 15
BssT1I CCWWGG 3 cut(s) 1274, 1304, 1663
Bst2UI CCWGG 6 cut(s) 112, 278, 316, 674, 1049, 2032
Bst4CI ACNGT 8 cut(s) 148, 182, 254, 398, 564, 1040, 1874, 1885
Bst6I CTCTTC 5 cut(s) 1481, 1515, 1806, 1812, 2039
BstACI GRCGYC 2 cut(s) 9, 15
BstAPI GCANNNNNTGC 4 cut(s) 54, 99, 438, 1611
BstBAI YACGTR 2 cut(s) 118, 514
BstC8I GCNNGC 9 cut(s) 207, 443, 634, 704, 708, 860, 1433, 1612, 1709
BstDEI CTNAG 9 cut(s) 453, 569, 765, 921, 1076, 1427, 1615, 1679, 1731
BstDSI CCRYGG 3 cut(s) 651, 964, 1663
BstF5I GGATG 4 cut(s) 855, 1462, 1894, 2014
BstFNI CGCG 1 cut(s) 624
BstH2I RGCGCY 1 cut(s) 1076
BstHHI GCGC 6 cut(s) 374, 626, 658, 1075, 1150, 1592
BstKTI GATC 5 cut(s) 1121, 1367, 1527, 1765, 1846
BstMAI GTCTC 8 cut(s) 22, 131, 260, 451, 570, 1498, 1675, 1874
BstMBI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
BstMCI CGRYCG 2 cut(s) 195, 792
BstNI CCWGG 6 cut(s) 112, 278, 316, 674, 1049, 2032
BstNSI RCATGY 6 cut(s) 102, 445, 1284, 1614, 1662, 1789
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 7 cut(s) 110, 276, 314, 672, 681, 1047, 2030
BstSNI TACGTA 1 cut(s) 514
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 4 cut(s) 196, 339, 416, 1801
BstV2I GAAGAC 3 cut(s) 957, 1131, 1788
BstX2I RGATCY 4 cut(s) 1118, 1364, 1524, 1762
BstYI RGATCY 4 cut(s) 1118, 1364, 1524, 1762
BstZI CGGCCG 2 cut(s) 192, 789
BsuRI GGCC 8 cut(s) 152, 194, 284, 314, 642, 791, 1309, 2030
BtgI CCRYGG 3 cut(s) 651, 964, 1663
BtgZI GCGATG 2 cut(s) 381, 860
BtsCI GGATG 4 cut(s) 855, 1462, 1894, 2014
BtsI GCAGTG 3 cut(s) 911, 1167, 2064
BtsIMutI CAGTG 6 cut(s) 911, 1110, 1167, 1446, 1676, 2064
BveI ACCTGC 1 cut(s) 1276
Cac8I GCNNGC 9 cut(s) 207, 443, 634, 704, 708, 860, 1433, 1612, 1709
CciI TCATGA 3 cut(s) 1248, 1698, 1767
CfoI GCGC 6 cut(s) 374, 626, 658, 1075, 1150, 1592
Cfr13I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
CseI GACGC 1 cut(s) 416
DdeI CTNAG 9 cut(s) 453, 569, 765, 921, 1076, 1427, 1615, 1679, 1731
DpnI GATC 5 cut(s) 1120, 1366, 1526, 1764, 1845
DpnII GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 5 cut(s) 150, 192, 640, 789, 2028
EagI CGGCCG 2 cut(s) 192, 789
Eam1104I CTCTTC 5 cut(s) 1481, 1515, 1806, 1812, 2039
EarI CTCTTC 5 cut(s) 1481, 1515, 1806, 1812, 2039
EciI GGCGGA 1 cut(s) 1011
EclXI CGGCCG 2 cut(s) 192, 789
Eco105I TACGTA 1 cut(s) 514
Eco130I CCWWGG 3 cut(s) 1274, 1304, 1663
Eco147I AGGCCT 1 cut(s) 1309
Eco24I GRGCYC 1 cut(s) 922
Eco31I GGTCTC 3 cut(s) 260, 451, 1675
Eco47I GGWCC 5 cut(s) 676, 769, 779, 961, 1297
Eco52I CGGCCG 2 cut(s) 192, 789
Eco72I CACGTG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 736
EcoRII CCWGG 6 cut(s) 110, 276, 314, 672, 1047, 2030
EcoT14I CCWWGG 3 cut(s) 1274, 1304, 1663
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 922
ErhI CCWWGG 3 cut(s) 1274, 1304, 1663
Esp3I CGTCTC 2 cut(s) 22, 570
FaqI GGGAC 4 cut(s) 123, 765, 1310, 1391
FauI CCCGC 1 cut(s) 1716
FauNDI CATATG 1 cut(s) 1144
FblI GTMKAC 2 cut(s) 12, 615
Fnu4HI GCNGC 8 cut(s) 192, 210, 229, 264, 353, 430, 547, 1790
FokI GGATG 4 cut(s) 862, 1469, 1901, 2021
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 8 cut(s) 192, 210, 229, 264, 353, 430, 547, 1790
FspBI CTAG 1 cut(s) 1152
GlaI GCGC 6 cut(s) 373, 625, 657, 1074, 1149, 1591
GluI GCNGC 8 cut(s) 192, 210, 229, 264, 353, 430, 547, 1790
GsaI CCCAGC 1 cut(s) 2022
GsuI CTGGAG 1 cut(s) 299
HaeII RGCGCY 1 cut(s) 1076
HaeIII GGCC 8 cut(s) 152, 194, 284, 314, 642, 791, 1309, 2030
HapII CCGG 6 cut(s) 74, 176, 188, 683, 939, 987
HgaI GACGC 1 cut(s) 416
HhaI GCGC 6 cut(s) 374, 626, 658, 1075, 1150, 1592
Hin1I GRCGYC 2 cut(s) 9, 15
Hin6I GCGC 6 cut(s) 372, 624, 656, 1073, 1148, 1590
HinP1I GCGC 6 cut(s) 372, 624, 656, 1073, 1148, 1590
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 1944
HinfI GANTC 9 cut(s) 82, 197, 217, 290, 377, 556, 573, 598, 871
HpaII CCGG 6 cut(s) 74, 176, 188, 683, 939, 987
HphI GGTGA 2 cut(s) 248, 1902
Hpy166II GTNNAC 3 cut(s) 13, 616, 1056
Hpy188I TCNGA 7 cut(s) 63, 202, 361, 382, 570, 698, 2069
Hpy8I GTNNAC 3 cut(s) 13, 616, 1056
Hpy99I CGWCG 8 cut(s) 14, 17, 41, 73, 251, 254, 290, 641
HpyAV CCTTC 3 cut(s) 674, 709, 1613
HpyCH4III ACNGT 8 cut(s) 148, 182, 254, 398, 564, 1040, 1874, 1885
HpyCH4IV ACGT 5 cut(s) 9, 15, 117, 513, 612
HpyF3I CTNAG 9 cut(s) 453, 569, 765, 921, 1076, 1427, 1615, 1679, 1731
HpySE526I ACGT 5 cut(s) 9, 15, 117, 513, 612
Hsp92I GRCGYC 2 cut(s) 9, 15
HspAI GCGC 6 cut(s) 372, 624, 656, 1073, 1148, 1590
Kpn2I TCCGGA 2 cut(s) 175, 938
Kzo9I GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
LmnI GCTCC 3 cut(s) 190, 420, 1276
Lsp1109I GCAGC 4 cut(s) 196, 339, 416, 1801
LweI GCATC 4 cut(s) 54, 454, 1447, 1914
MaeI CTAG 1 cut(s) 1152
MaeII ACGT 5 cut(s) 9, 15, 117, 513, 612
MaeIII GTNAC 6 cut(s) 236, 463, 479, 754, 1576, 2023
MalI GATC 5 cut(s) 1120, 1366, 1526, 1764, 1845
MboI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
MflI RGATCY 4 cut(s) 1118, 1364, 1524, 1762
MhlI GDGCHC 2 cut(s) 187, 922
MluCI AATT 6 cut(s) 484, 541, 1188, 1702, 1796, 1860
MlyI GAGTC 1 cut(s) 299
Mph1103I ATGCAT 1 cut(s) 447
MroI TCCGGA 2 cut(s) 175, 938
MseI TTAA 4 cut(s) 1007, 1082, 1227, 1755
MslI CAYNNNNRTG 2 cut(s) 47, 1065
MspA1I CMGCKG 1 cut(s) 1711
MspI CCGG 6 cut(s) 74, 176, 188, 683, 939, 987
MspR9I CCNGG 7 cut(s) 112, 278, 316, 674, 683, 1049, 2032
Mva1269I GAATGC 3 cut(s) 692, 860, 1777
MvaI CCWGG 6 cut(s) 112, 278, 316, 674, 1049, 2032
MvnI CGCG 1 cut(s) 624
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 1663
NdeI CATATG 1 cut(s) 1144
NdeII GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
NlaIV GGNNCC 3 cut(s) 781, 1298, 1624
NmeAIII GCCGAG 2 cut(s) 178, 817
NmuCI GTSAC 2 cut(s) 236, 479
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 6 cut(s) 102, 445, 1284, 1614, 1662, 1789
PaeI GCATGC 2 cut(s) 445, 1614
PaeR7I CTCGAG 1 cut(s) 736
PagI TCATGA 3 cut(s) 1248, 1698, 1767
PceI AGGCCT 1 cut(s) 1309
PciI ACATGT 1 cut(s) 1280
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 246, 510
PctI GAATGC 3 cut(s) 692, 860, 1777
PfeI GAWTC 8 cut(s) 82, 197, 217, 377, 556, 573, 598, 871
PkrI GCNGC 8 cut(s) 193, 211, 230, 265, 354, 431, 548, 1791
PleI GAGTC 1 cut(s) 298
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 2 cut(s) 118, 514
PscI ACATGT 1 cut(s) 1280
PshAI GACNNNNGTC 1 cut(s) 252
PsiI TTATAA 1 cut(s) 1322
Psp6I CCWGG 6 cut(s) 110, 276, 314, 672, 1047, 2030
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 2018
PspGI CCWGG 6 cut(s) 110, 276, 314, 672, 1047, 2030
PspN4I GGNNCC 3 cut(s) 781, 1298, 1624
PspPI GGNCC 5 cut(s) 676, 769, 779, 961, 1297
PspXI VCTCGAGB 1 cut(s) 736
PsuI RGATCY 4 cut(s) 1118, 1364, 1524, 1762
RseI CAYNNNNRTG 2 cut(s) 47, 1065
SalI GTCGAC 1 cut(s) 11
SaqAI TTAA 4 cut(s) 1007, 1082, 1227, 1755
SatI GCNGC 8 cut(s) 192, 210, 229, 264, 353, 430, 547, 1790
Sau3AI GATC 5 cut(s) 1118, 1364, 1524, 1762, 1843
Sau96I GGNCC 5 cut(s) 676, 769, 779, 961, 1297
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 7 cut(s) 112, 278, 316, 674, 683, 1049, 2032
SduI GDGCHC 2 cut(s) 187, 922
SfaNI GCATC 4 cut(s) 54, 454, 1447, 1914
Sfr274I CTCGAG 1 cut(s) 736
SgrDI CGTCGACG 1 cut(s) 11
SinI GGWCC 5 cut(s) 676, 769, 779, 961, 1297
SlaI CTCGAG 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 47, 1065
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SnaBI TACGTA 1 cut(s) 514
SphI GCATGC 2 cut(s) 445, 1614
Sse9I AATT 6 cut(s) 484, 541, 1188, 1702, 1796, 1860
SseBI AGGCCT 1 cut(s) 1309
SspI AATATT 1 cut(s) 750
SspMI CTAG 1 cut(s) 1152
StuI AGGCCT 1 cut(s) 1309
StyD4I CCNGG 7 cut(s) 110, 276, 314, 672, 681, 1047, 2030
StyI CCWWGG 3 cut(s) 1274, 1304, 1663
TaaI ACNGT 8 cut(s) 148, 182, 254, 398, 564, 1040, 1874, 1885
TaiI ACGT 5 cut(s) 12, 18, 120, 516, 615
TaqI TCGA 3 cut(s) 12, 737, 1718
TaqII GACCGA 1 cut(s) 1314
TasI AATT 6 cut(s) 484, 541, 1188, 1702, 1796, 1860
TauI GCSGC 4 cut(s) 194, 231, 266, 549
TfiI GAWTC 8 cut(s) 82, 197, 217, 377, 556, 573, 598, 871
Tru1I TTAA 4 cut(s) 1007, 1082, 1227, 1755
Tru9I TTAA 4 cut(s) 1007, 1082, 1227, 1755
TscAI CASTG 6 cut(s) 911, 1110, 1167, 1446, 1683, 2064
TseFI GTSAC 2 cut(s) 236, 479
TseI GCWGC 4 cut(s) 209, 352, 429, 1789
Tsp45I GTSAC 2 cut(s) 236, 479
TspGWI ACGGA 7 cut(s) 10, 125, 255, 314, 433, 1036, 1775
TspRI CASTG 6 cut(s) 911, 1110, 1167, 1446, 1683, 2064
VpaK11BI GGWCC 5 cut(s) 676, 769, 779, 961, 1297
XceI RCATGY 6 cut(s) 102, 445, 1284, 1614, 1662, 1789
XcmI CCANNNNNNNNNTGG 1 cut(s) 1535
XhoI CTCGAG 1 cut(s) 736
XmiI GTMKAC 2 cut(s) 12, 615
XspI CTAG 1 cut(s) 1152
ZraI GACGTC 2 cut(s) 10, 16
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.