Rw4G024840

SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000644
Physical Location & Seq
Forward (+)
50779996 .. 50783540
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024840.1

Sequence Viewer

Length: 2055 bp
ATGGCTGACGTCTCCGTCTCCGTTCTTCCCTGCAACGACGGCATTTGCATGATGTGCAACCAGATGCCGTCGCCGGAGGAGATTCTCCCCTGCAACACATGCACCTCCCCCTGGCACGTGTCCTGTCTCTCCGTCCGTCCCGATACTGTGGCCGAGGCTCTGGACTGGGAGTGTCCGGACTGTGCTCCGGCGGCCGATTCCGAGCAGGCTGCTGTGAATTCTGTCGGCGCCAGAGGTGACGGAGGCGACGACGACGGTCTCATCGCCGCTATCAAAGCCCTGGAGGCCGACGAGTCACTGACGGAGAGAGAAAAGGCCAGGAAACGACAGGCGTTGATGTCCAAAACCGCATTGCTGCCGTCCGATAGCGATGGCGCTGATTCCGAGAAAAAGATGAACGGTGGTAATGACGCACTCCTACGGAGCTTTTGCTGCACCATTTGCATGCATCTTCCTGAGAGACCCGTTACGACACCTTGCGGTCACAATTTCTGCCTGAAATGCTACGACAGATACGTAGGACAAGGAAAACGACAATGTGCAAATTGCCGCCAACCGATTCCATCGTCTCTGAGAATCAACGAGGTTCTTGTGAGGGCGATTCGTAGAGCGAACGTAGACAAACGCGCCACCGCAGGCGACGGCCAACGCCCCGTGGCGCAATACCTCCACAACCAGGACCGCCCGGACAAAGCATTCAGAAGCGAGCGAGCGAAGAAGGCTGGAAATGCCAATGCCTCGAGTGGAAGAATATTTGTTACGACTGCTAAGGACCATTTTGGTCCCATAACGGCCGAGTATGACCCAGAGAGGAATGAGGGTGTGTCGGTGGGGAGGACTTGGCAGTATAGGATGGAATGCAGGCAATGGGGGATTCATCGCTCTGTGGTTGCAGGGATTTCGGGGCAGAGTAGGCATGGGGCTCAGTCGGTAGTTTTGTCCGGAGGATATGAAGACGATGAGGACCACGGCGAGTGGTTCATTTATACCGGAAGTGGTGGAAAAGATTTAAGTGGAAATAAACGGACGAACAAGGAACACAGTAAAGACCAGGAGTTTACGCACATGAATGAGGCGCTGAGGTTAAGTTGCAGAATGGGTTATCCAGTGCGAGTAGTGAGATCCCACAAAGAGAAGCGGTCTTCATATGCGCCTAGAGAAGCAGTGGTGCGATACGATGGGATTTACAGAATTGAAAAATGTTGGCGAAAGAAAGGAACGCAGGGATTCAAGGTATGCAGATACCTTTTCATGAGATGTGATAACGAACCTGCTCCTTGGACATGTGATGTTCATGGGGACCGACCAAGGCCTCTGCCATTTATAAAGGAGTTGAAAGGGGCAACCGATATAACAGAAAGAAAAGGATCTCCATCGTGGGAGTACGATGAAGAAAAAGAGTGCTGGTTGTGGAAAAAGCCTCCACCACTTAGCAAGCAACCAGTGGAGGATAGTGGGGATGCAGAGGAGGGGAAGAAAGTAAAAGTGAAGAGAGCTTATATGCAGAGACAGATTATGGAAGAAGAGATCCAGAGAGAGTTTGGCTGTCATATATGTCATAAGGTTTTGAATTCCCCTGTTACAACACCATGCGCTCACAACTTCTGCAAAGCATGCTTAGAAGGTGCCTTTGCTGGTTTGACTTATAAAAGAGAGGACATGCCATGGAAGAAGACACTGAGACCACAAAAGAATGTCATGAATTGCCCGCTGTGTTCGACTGACATAGCTGAGTTTCTCCAAAATCTAAAGGTTAATACGGATCTCATGAATGCCATAAAAGACATGCAGCAGAAATTGGAAGATTTGGAAGAGGAAGAGGAAGCTGAAAAGGAAGTAGAAGATCAGGAACAGGAAGAAATTGACAATGACGGTAAAGAGACTGTGGATGAAGCCAAAGAAAGCATCTCACCAGCACCCCAGACTGAAACTACACCGCAAGAAGATTGTGAGCAAAAGAAACCAACTCGTAAGCGAAAGAAGTCAAACAATGCCGAAAATGCGGTGGATGGTCATGCTGGGGTAACGGCCAGGAGGAGTAAGAAGAGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006464 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008327 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010216 GO:0010228 GO:0010424 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031935 GO:0031937 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032501 GO:0032502 GO:0032776 GO:0033043 GO:0033044 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0090304 GO:0090308 GO:0090309 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905269 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAD_SRA zf-C3HC4 zf-RING_UBOX

Protein Analysis

684

Amino Acids

76.88

Weight (kDa)

6.51

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 144 - 188 1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 145 - 183 1.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 145 - 183 1e-05 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 145 - 178 8.3e-06 zinc finger of C3HC4-type, RING
SAD_SRA PF02182 272 - 422 2.5e-52 SAD/SRA domain
zf-RING_UBOX PF13445 516 - 549 8.4e-07 RING-type zinc-finger
zf-C3HC4_2 PF13923 516 - 541 6.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1325, 1647
AasI GACNNNNNNGTC 1 cut(s) 14
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 1279
AccB1I GGYRCC 2 cut(s) 227, 1625
AccI GTMKAC 1 cut(s) 618
AccII CGCG 1 cut(s) 627
AccIII TCCGGA 2 cut(s) 175, 941
AclWI GGATC 4 cut(s) 1116, 1375, 1522, 1770
AcoI YGGCCR 5 cut(s) 150, 192, 643, 792, 2028
AcsI RAATTY 2 cut(s) 217, 1570
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 2 cut(s) 9, 228
AfaI GTAC 1 cut(s) 1385
AfiI CCNNNNNNNGG 2 cut(s) 111, 676
AflIII ACRYGT 2 cut(s) 117, 1283
AgsI TTSAA 4 cut(s) 1196, 1231, 1336, 1570
AjnI CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2030
AluBI AGCT 4 cut(s) 426, 1496, 1730, 1826
AluI AGCT 4 cut(s) 426, 1496, 1730, 1826
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 9 cut(s) 16, 22, 131, 263, 454, 573, 1501, 1675, 1874
AlwI GGATC 4 cut(s) 1116, 1375, 1522, 1770
Ama87I CYCGRG 1 cut(s) 739
Aor13HI TCCGGA 2 cut(s) 175, 941
AoxI GGCC 8 cut(s) 150, 192, 285, 315, 643, 792, 1310, 2028
ApeKI GCWGC 4 cut(s) 209, 355, 432, 1789
ApoI RAATTY 2 cut(s) 217, 1570
AspLEI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
AspS9I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 2 cut(s) 248, 1902
AvaI CYCGRG 1 cut(s) 739
AvaII GGWCC 5 cut(s) 679, 772, 782, 964, 1300
BanI GGYRCC 2 cut(s) 227, 1625
BanII GRGCYC 1 cut(s) 925
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 3 cut(s) 960, 1134, 1679
Bbv12I GWGCWC 1 cut(s) 187
BbvCI CCTCAGC 1 cut(s) 1079
BbvI GCAGC 4 cut(s) 196, 342, 419, 1801
BccI CCATC 6 cut(s) 365, 571, 847, 1172, 1381, 2003
BceAI ACGGC 7 cut(s) 52, 55, 343, 658, 807, 985, 2043
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 882, 916
BciT130I CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2032
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 9 cut(s) 16, 22, 131, 263, 454, 573, 1501, 1675, 1874
BfaI CTAG 1 cut(s) 1155
BfoI RGCGCY 3 cut(s) 231, 378, 1079
BfuAI ACCTGC 1 cut(s) 1279
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1790
BlsI GCNGC 7 cut(s) 193, 211, 268, 357, 434, 551, 1791
Bme1390I CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2032
Bme18I GGWCC 5 cut(s) 679, 772, 782, 964, 1300
BmeT110I CYCGRG 1 cut(s) 739
BmgT120I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
BmiI GGNNCC 4 cut(s) 229, 784, 1301, 1627
BmrFI CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2032
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 4 cut(s) 54, 457, 1450, 1914
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 255
BpiI GAAGAC 3 cut(s) 960, 1134, 1679
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 2 cut(s) 768, 1079
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 2 cut(s) 118, 517
BsaBI GATNNNNATC 1 cut(s) 1372
BsaHI GRCGYC 2 cut(s) 9, 228
BsaI GGTCTC 3 cut(s) 263, 454, 1675
BsaJI CCNNGG 8 cut(s) 110, 153, 279, 654, 967, 1277, 1307, 1664
BsaWI WCCGGW 3 cut(s) 175, 941, 989
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 676
Bse1I ACTGG 3 cut(s) 170, 1106, 1442
Bse3DI GCAATG 2 cut(s) 350, 872
Bse8I GATNNNNATC 1 cut(s) 1372
BseAI TCCGGA 2 cut(s) 175, 941
BseBI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2032
BseDI CCNNGG 8 cut(s) 110, 153, 279, 654, 967, 1277, 1307, 1664
BseGI GGATG 4 cut(s) 858, 1465, 1894, 2014
BseJI GATNNNNATC 1 cut(s) 1372
BseLI CCNNNNNNNGG 2 cut(s) 111, 676
BseMI GCAATG 2 cut(s) 350, 872
BseMII CTCAG 6 cut(s) 447, 563, 938, 1070, 1670, 1722
BseNI ACTGG 3 cut(s) 170, 1106, 1442
BseRI GAGGAG 3 cut(s) 92, 1481, 2050
BseX3I CGGCCG 2 cut(s) 192, 792
BseXI GCAGC 4 cut(s) 196, 342, 419, 1801
BseYI CCCAGC 1 cut(s) 2018
BsgI GTGCAG 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 627
Bsh1285I CGRYCG 2 cut(s) 195, 795
BshFI GGCC 8 cut(s) 152, 194, 287, 317, 645, 794, 1312, 2030
BshNI GGYRCC 2 cut(s) 227, 1625
BsiEI CGRYCG 2 cut(s) 195, 795
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 739
BsiSI CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
BslFI GGGAC 3 cut(s) 123, 768, 1313
BslI CCNNNNNNNGG 2 cut(s) 111, 676
BsmAI GTCTC 9 cut(s) 16, 22, 131, 263, 454, 573, 1501, 1675, 1874
BsmBI CGTCTC 3 cut(s) 16, 22, 573
BsmFI GGGAC 3 cut(s) 123, 768, 1313
BsmI GAATGC 3 cut(s) 695, 863, 1777
BsnI GGCC 8 cut(s) 152, 194, 287, 317, 645, 794, 1312, 2030
Bso31I GGTCTC 3 cut(s) 263, 454, 1675
BsoBI CYCGRG 1 cut(s) 739
Bsp1286I GDGCHC 2 cut(s) 187, 925
Bsp13I TCCGGA 2 cut(s) 175, 941
Bsp143I GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
Bsp19I CCATGG 1 cut(s) 1664
BspANI GGCC 8 cut(s) 152, 194, 287, 317, 645, 794, 1312, 2030
BspCNI CTCAG 6 cut(s) 448, 564, 937, 1071, 1671, 1723
BspEI TCCGGA 2 cut(s) 175, 941
BspFNI CGCG 1 cut(s) 627
BspHI TCATGA 3 cut(s) 1251, 1698, 1767
BspLI GGNNCC 4 cut(s) 229, 784, 1301, 1627
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 4 cut(s) 1116, 1375, 1522, 1770
BspT107I GGYRCC 2 cut(s) 227, 1625
BspTNI GGTCTC 3 cut(s) 263, 454, 1675
BsrDI GCAATG 2 cut(s) 350, 872
BsrI ACTGG 3 cut(s) 170, 1106, 1442
BssECI CCNNGG 8 cut(s) 110, 153, 279, 654, 967, 1277, 1307, 1664
BssMI GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
BssNI GRCGYC 2 cut(s) 9, 228
BssT1I CCWWGG 3 cut(s) 1277, 1307, 1664
Bst2UI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2032
Bst4CI ACNGT 7 cut(s) 148, 182, 257, 401, 1043, 1874, 1885
Bst6I CTCTTC 5 cut(s) 1484, 1518, 1806, 1812, 2039
BstACI GRCGYC 2 cut(s) 9, 228
BstAPI GCANNNNNTGC 4 cut(s) 54, 99, 441, 1614
BstBAI YACGTR 2 cut(s) 118, 517
BstC8I GCNNGC 9 cut(s) 207, 446, 637, 707, 711, 863, 1436, 1615, 1709
BstDEI CTNAG 9 cut(s) 456, 572, 768, 924, 1079, 1430, 1618, 1679, 1731
BstDSI CCRYGG 3 cut(s) 654, 967, 1664
BstF5I GGATG 4 cut(s) 858, 1465, 1894, 2014
BstFNI CGCG 1 cut(s) 627
BstH2I RGCGCY 3 cut(s) 231, 378, 1079
BstHHI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
BstKTI GATC 5 cut(s) 1124, 1370, 1530, 1765, 1846
BstMAI GTCTC 9 cut(s) 16, 22, 131, 263, 454, 573, 1501, 1675, 1874
BstMBI GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
BstMCI CGRYCG 2 cut(s) 195, 795
BstNI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2032
BstNSI RCATGY 6 cut(s) 102, 448, 1287, 1617, 1663, 1789
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 7 cut(s) 110, 279, 317, 675, 684, 1050, 2030
BstSNI TACGTA 1 cut(s) 517
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 4 cut(s) 196, 342, 419, 1801
BstV2I GAAGAC 3 cut(s) 960, 1134, 1679
BstX2I RGATCY 4 cut(s) 1121, 1367, 1527, 1762
BstYI RGATCY 4 cut(s) 1121, 1367, 1527, 1762
BstZI CGGCCG 2 cut(s) 192, 792
BsuRI GGCC 8 cut(s) 152, 194, 287, 317, 645, 794, 1312, 2030
BtgI CCRYGG 3 cut(s) 654, 967, 1664
BtgZI GCGATG 3 cut(s) 247, 384, 863
BtsCI GGATG 4 cut(s) 858, 1465, 1894, 2014
BtsI GCAGTG 1 cut(s) 1170
BtsIMutI CAGTG 5 cut(s) 296, 1113, 1170, 1449, 1676
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 9 cut(s) 207, 446, 637, 707, 711, 863, 1436, 1615, 1709
CciI TCATGA 3 cut(s) 1251, 1698, 1767
CfoI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
Cfr13I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 1384
CviQI GTAC 1 cut(s) 1384
DdeI CTNAG 9 cut(s) 456, 572, 768, 924, 1079, 1430, 1618, 1679, 1731
DinI GGCGCC 1 cut(s) 229
DpnI GATC 5 cut(s) 1123, 1369, 1529, 1764, 1845
DpnII GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 5 cut(s) 150, 192, 643, 792, 2028
EagI CGGCCG 2 cut(s) 192, 792
Eam1104I CTCTTC 5 cut(s) 1484, 1518, 1806, 1812, 2039
EarI CTCTTC 5 cut(s) 1484, 1518, 1806, 1812, 2039
EclXI CGGCCG 2 cut(s) 192, 792
Eco105I TACGTA 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 1277, 1307, 1664
Eco147I AGGCCT 1 cut(s) 1312
Eco24I GRGCYC 1 cut(s) 925
Eco31I GGTCTC 3 cut(s) 263, 454, 1675
Eco47I GGWCC 5 cut(s) 679, 772, 782, 964, 1300
Eco52I CGGCCG 2 cut(s) 192, 792
Eco72I CACGTG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 739
EcoRI GAATTC 2 cut(s) 217, 1570
EcoRII CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2030
EcoT14I CCWWGG 3 cut(s) 1277, 1307, 1664
EcoT22I ATGCAT 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 925
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 3 cut(s) 1277, 1307, 1664
Esp3I CGTCTC 3 cut(s) 16, 22, 573
FaqI GGGAC 3 cut(s) 123, 768, 1313
FauI CCCGC 1 cut(s) 1716
FauNDI CATATG 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1790
FokI GGATG 4 cut(s) 865, 1472, 1901, 2021
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1790
FspBI CTAG 1 cut(s) 1155
GlaI GCGC 7 cut(s) 229, 376, 628, 660, 1077, 1152, 1594
GluI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1790
GsaI CCCAGC 1 cut(s) 2022
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 3 cut(s) 231, 378, 1079
HaeIII GGCC 8 cut(s) 152, 194, 287, 317, 645, 794, 1312, 2030
HapII CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
HgaI GACGC 1 cut(s) 419
HhaI GCGC 7 cut(s) 230, 377, 629, 661, 1078, 1153, 1595
Hin1I GRCGYC 2 cut(s) 9, 228
Hin6I GCGC 7 cut(s) 228, 375, 627, 659, 1076, 1151, 1593
HinP1I GCGC 7 cut(s) 228, 375, 627, 659, 1076, 1151, 1593
HinfI GANTC 9 cut(s) 82, 197, 293, 380, 559, 576, 601, 874, 1227
HpaII CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
HphI GGTGA 2 cut(s) 248, 1902
Hpy166II GTNNAC 2 cut(s) 619, 1059
Hpy188I TCNGA 5 cut(s) 202, 364, 385, 573, 701
Hpy8I GTNNAC 2 cut(s) 619, 1059
Hpy99I CGWCG 7 cut(s) 41, 73, 251, 254, 257, 293, 644
HpyAV CCTTC 2 cut(s) 712, 1616
HpyCH4III ACNGT 7 cut(s) 148, 182, 257, 401, 1043, 1874, 1885
HpyCH4IV ACGT 4 cut(s) 9, 117, 516, 615
HpyF3I CTNAG 9 cut(s) 456, 572, 768, 924, 1079, 1430, 1618, 1679, 1731
HpySE526I ACGT 4 cut(s) 9, 117, 516, 615
Hsp92I GRCGYC 2 cut(s) 9, 228
HspAI GCGC 7 cut(s) 228, 375, 627, 659, 1076, 1151, 1593
KasI GGCGCC 1 cut(s) 227
Kpn2I TCCGGA 2 cut(s) 175, 941
Kzo9I GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
LmnI GCTCC 3 cut(s) 190, 423, 1279
Lsp1109I GCAGC 4 cut(s) 196, 342, 419, 1801
LweI GCATC 4 cut(s) 54, 457, 1450, 1914
MaeI CTAG 1 cut(s) 1155
MaeII ACGT 4 cut(s) 9, 117, 516, 615
MaeIII GTNAC 7 cut(s) 236, 294, 466, 482, 757, 1579, 2023
MalI GATC 5 cut(s) 1123, 1369, 1529, 1764, 1845
MboI GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
MflI RGATCY 4 cut(s) 1121, 1367, 1527, 1762
MhlI GDGCHC 2 cut(s) 187, 925
MluCI AATT 8 cut(s) 217, 487, 544, 1191, 1570, 1702, 1796, 1860
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 450
MroI TCCGGA 2 cut(s) 175, 941
MseI TTAA 3 cut(s) 1010, 1085, 1755
MslI CAYNNNNRTG 3 cut(s) 47, 443, 1068
MspA1I CMGCKG 1 cut(s) 1711
MspI CCGG 6 cut(s) 74, 176, 188, 686, 942, 990
MspR9I CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2032
Mva1269I GAATGC 3 cut(s) 695, 863, 1777
MvaI CCWGG 6 cut(s) 112, 281, 319, 677, 1052, 2032
MvnI CGCG 1 cut(s) 627
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 1664
NdeI CATATG 1 cut(s) 1147
NdeII GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
NlaIV GGNNCC 4 cut(s) 229, 784, 1301, 1627
NmeAIII GCCGAG 2 cut(s) 178, 820
NmuCI GTSAC 3 cut(s) 236, 294, 482
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 6 cut(s) 102, 448, 1287, 1617, 1663, 1789
PaeI GCATGC 2 cut(s) 448, 1617
PaeR7I CTCGAG 1 cut(s) 739
PagI TCATGA 3 cut(s) 1251, 1698, 1767
PceI AGGCCT 1 cut(s) 1312
PciI ACATGT 1 cut(s) 1283
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 513
PctI GAATGC 3 cut(s) 695, 863, 1777
PfeI GAWTC 8 cut(s) 82, 197, 380, 559, 576, 601, 874, 1227
PkrI GCNGC 7 cut(s) 193, 211, 268, 357, 434, 551, 1791
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 231
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 2 cut(s) 118, 517
PscI ACATGT 1 cut(s) 1283
PshAI GACNNNNGTC 1 cut(s) 255
PsiI TTATAA 2 cut(s) 1325, 1647
Psp6I CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2030
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 2018
PspGI CCWGG 6 cut(s) 110, 279, 317, 675, 1050, 2030
PspN4I GGNNCC 4 cut(s) 229, 784, 1301, 1627
PspPI GGNCC 5 cut(s) 679, 772, 782, 964, 1300
PspXI VCTCGAGB 1 cut(s) 739
PsuI RGATCY 4 cut(s) 1121, 1367, 1527, 1762
RsaI GTAC 1 cut(s) 1385
RsaNI GTAC 1 cut(s) 1384
RseI CAYNNNNRTG 3 cut(s) 47, 443, 1068
SaqAI TTAA 3 cut(s) 1010, 1085, 1755
SatI GCNGC 7 cut(s) 192, 210, 267, 356, 433, 550, 1790
Sau3AI GATC 5 cut(s) 1121, 1367, 1527, 1762, 1843
Sau96I GGNCC 5 cut(s) 679, 772, 782, 964, 1300
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 7 cut(s) 112, 281, 319, 677, 686, 1052, 2032
SduI GDGCHC 2 cut(s) 187, 925
SfaNI GCATC 4 cut(s) 54, 457, 1450, 1914
SfoI GGCGCC 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 739
SinI GGWCC 5 cut(s) 679, 772, 782, 964, 1300
SlaI CTCGAG 1 cut(s) 739
SmiMI CAYNNNNRTG 3 cut(s) 47, 443, 1068
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SnaBI TACGTA 1 cut(s) 517
SphI GCATGC 2 cut(s) 448, 1617
Sse9I AATT 8 cut(s) 217, 487, 544, 1191, 1570, 1702, 1796, 1860
SseBI AGGCCT 1 cut(s) 1312
SspDI GGCGCC 1 cut(s) 227
SspI AATATT 1 cut(s) 753
SspMI CTAG 1 cut(s) 1155
StuI AGGCCT 1 cut(s) 1312
StyD4I CCNGG 7 cut(s) 110, 279, 317, 675, 684, 1050, 2030
StyI CCWWGG 3 cut(s) 1277, 1307, 1664
TaaI ACNGT 7 cut(s) 148, 182, 257, 401, 1043, 1874, 1885
TaiI ACGT 4 cut(s) 12, 120, 519, 618
TaqI TCGA 2 cut(s) 740, 1718
TaqII GACCGA 1 cut(s) 1317
TasI AATT 8 cut(s) 217, 487, 544, 1191, 1570, 1702, 1796, 1860
TauI GCSGC 3 cut(s) 194, 269, 552
TfiI GAWTC 8 cut(s) 82, 197, 380, 559, 576, 601, 874, 1227
Tru1I TTAA 3 cut(s) 1010, 1085, 1755
Tru9I TTAA 3 cut(s) 1010, 1085, 1755
TscAI CASTG 5 cut(s) 303, 1113, 1170, 1449, 1683
TseFI GTSAC 3 cut(s) 236, 294, 482
TseI GCWGC 4 cut(s) 209, 355, 432, 1789
Tsp45I GTSAC 3 cut(s) 236, 294, 482
TspGWI ACGGA 9 cut(s) 4, 10, 121, 125, 255, 317, 436, 1039, 1775
TspRI CASTG 5 cut(s) 303, 1113, 1170, 1449, 1683
VpaK11BI GGWCC 5 cut(s) 679, 772, 782, 964, 1300
XapI RAATTY 2 cut(s) 217, 1570
XceI RCATGY 6 cut(s) 102, 448, 1287, 1617, 1663, 1789
XcmI CCANNNNNNNNNTGG 1 cut(s) 1538
XhoI CTCGAG 1 cut(s) 739
XmiI GTMKAC 1 cut(s) 618
XspI CTAG 1 cut(s) 1155
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.