Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

22919487 .. 22924024

Gene Structure 4538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3651 bp

ATGTTGACAAAGTTCGAAACCAAAAGTAACAGAGTTAAGGGACTGAGTTTTCACCCTAAACGACCATGGATTCTCGCGAGTTTGCACAGTGGCGTGATCCAGCTCTGGGATTATCGTATGGGTACTTTGATCGATAGATTCGACGAACACGAAGGACCTGTTCGTGGTGTTCATTTCCACAATTCTCAGCCTCTCTTCGTCTCCGGAGGGGATGATTACAAGATTAAAGTGTGGAACTACAAAAACCACAGGTGCCTTTTCACTCTTCTAGGGCATCTTGATTATATCCGCACGGTTCAGTTCCATCATGAGTACCCATGGATTGTGAGTGCAAGTGATGATCAAACTATCCGTATATGGAACTGGCAATCACGGACTTGTGTTTCTGTATTGACTGGTCACAATCATTATGTTATGTGTGCTTCTTTCCATCCGAAAGAAGACCTCGTCGTATCAGCTTCGTTAGATCAGACTGTTCGTGTTTGGGATATTGGTGCTCTTAGGAAGAAGACTGTATCTCCTGCTGATGATATCATGAGGTTGACTCAGATGAATAGTGATCTTTTTGGTGGAGTTGATGCCATTGTCAAGTACGTTCTTGAAGGTCATGATAGAGGTGTAAACTGGGCTGCTTTTCATCCCACCCTGCCTCTTATTGTCTCGGGTGCAGATGACCGCCAAGTAAAGCTGTGGCGTATGAATGAAACTAAAGCTTGGGAGGTGGATACATTGCGAGGCCATATGAATAACGTTTCATCTGTTATGTTCCATGCAAAACAGGACATAATTGTATCAAACTCTGAAGATAAGAGCATCCGTGTCTGGGATGCTACCAAGCGAACTGGACTTCAGACTTTCCGTCGTGAACATGATAGATTCTGGATTCTTGCAGTTCACCCTGAGATGAATCTACTAGCAGCAGGACATGACAGTGGCATGATTGTGTTCAAGCTTGAGAGAGAACGTCCTGCATTTGCTTTGAGTGGGGATTCTTTGTTCTATGCCAAGGATAGATTCTTGCGGTACTATGAATATTCAACTCAAAGGGATTCCCAAGTTATCCCTATACGGCGTCCGGGTACTCCAAGCTTGAATCAAAGTCCTAGGACTCTATCATACAGTCCCACTGAAAATGCAGTTTTGATCTGCTCAGATCTGGATGGTGGTTCGTATGAGTTGTACATCATACCGAAAGATAGTGTTGGCAGGAGTGACGTTGTGCAAGATGCAAAGAGAGGGACAGGTGGCTCTGCAGTATTCATTGCCCGTAACCGATTTGCTGTTCTCGAGAAAAGCACCAGCCAAGTGCTAGTCAAGAATCTAAAGAATGAGGTGGTTAAAAAGAGTCCTCTGCCTATTCCCACAGATGCTATCTTTTATGCTGGGACTGGGAATTTGCTTTGTAGATCTGAGGATAAAGTAGTTATCTTTGACCTCCAGCAAAGGCTTGTTCTTGGTGAGCTTCAGACACCATTTGTTAGGTACGTTGTTTGGTCCAGTGATATGGAGAGTGTTGCTTTGCTCAGCAAACATACTATCATTATCGCGAGCAAAAAACTTGTTCTCCAGTGCACGCTTCATGAGACGATACGTGTGAAAAGTGGAGCTTGGGACGATAATGGTGTCTTCATTTACACAACTTTGAATCATATCAAGTACTGTCTTCCTAATGGAGATAGTGGAATCATCCGAACCCTGGATGTCCCAATCTATATCACCAAGGTGTCTGGTAATACAATCTTTTGCTTGGATCGGGATGGCAAAAACAAGGCTATCACCATTAATGCAACCGAGTACATTTTCAAGCTTTCACTGCTGAGGAAGAGATATGATCATGTCATGAGCATGATAAAGAACTCTCAGCTATGTGGACAGGCTATGATTGCTTACCTGCAGCAGAAAGGATTCCCTGAAGTTGCCCTCCATTTTGTTGAAGATGAGAGGATCCGATTCAATCTGGCTCTTGAAAGTGGCAACATCAGTGTGGCTGTTGCATCCGCTACACAGATTAACGAGAAAGACCACTGGTATAGACTTGGAGTGGAGGCTCTTCGCCAAGGTAATTCTGGAATTGTTGAGTTTGCATACCAGCAGACAAAGAACTTTGAGAGGTTATCTTTTCTTTATCTCATTACTGGAAATTTGGACAAGCTTTCAAAGTTGATGAAGATTGCAGAAGTGAAGAACAACGTAATGGGACAGTTTCACAATGCTCTCTACCTAGGAGATGTTAAAGAGCGTGTTAAGATACTGGAGAATGCTGGTCATTTGCCTCTAGCTTATATCACAGCTTCGGTTCATGGTTTAAATGACATTGCTGAGCGACTGGCAACTGAGTTAGGAGACAACGTGCCCTCATTGCCTGAAGGAAAAACTCCATCGCTTCTAATGCCACCGACACCCATCATGTGTGGTGGTGATTGGCCTCTTCTTAGAGTGATGAAAGGAATATTTGAAGGAGGACTTGAGAGTGCAGACAGAGGAGGTACTGTTGATGAAGAAGATGTTGAAGGGGATTGGGGTGAGGAACTTGACATTAATGTTGATGGAATGGAGAACAGAGATATTGAAGACATTTTGGCGGCTGCAGAAGCAGGTGAAGAAGAAAACGATGAGGAAGGTGGATGGGGACTTGAAGACTTGGTGCTCCCACCAGAGCTTGACACTCCTAAAGCCTCTGCTAATGCACGTTCATCTGTTTTTGTGACACCTCCCCAAGGTATGCCCGTAAGTCAGAGCTGGAGCCAGAAATCTTCTCTTGCTGCTGAGCAAGCCGCAGCGGGAAGCTTCGACACTGCAATGCGTCTGCTCCACAGACAGCTTGGTATCAAGAACTTTACACCTTTGAAATCGATGTTTCTAGATCTGTTCAATGGCAGCCATAGCTATCTGCGTGCTTTTTCTTCATGTCCTGTGGTTCCACTTGCCATTGAGCGTGGATGGAGCGAGTCTTCCAGTCCCAACGTCCGTAGCCCACCAGCTCTTGTTTATGATTTCTCTCAGCTAGACGAGAAGCTCAAATCCGGCTACAAAGCTACAACAACTGGGAAATTCACTGAGGCTCTCCGTCTCTTCCTTTCTATCCTGCACACCATCCCTCTAGTGGTAGTCGAGACAAGAAGAGAAGTGGATGAGGTCAAGGAATTAATCGTTATCGTTAAAGAATATGTCCTTGGTCTTCAAATGGAGCTCAAGAGGAGAGAGATGAAAGATGATCCGGTGAGGCAGCAAGAGCTCGCTGCTTACTTCACTCACTGCAACCTCCAAACACCTCACTTACGGCTTGCGCTGCTTAGTGCAATGGGTGTCTGCTACAAGGCAAAGAACCTCGCCACTGCTTCTAATTTCGCCAGAAGACTGTTGGAAACAAGCCCAGTTGATAGCCAAGCCAAGATGGCTAGACAAGTTGTGCAAGCCGCTGAACGTAACATGACCGATGAAACAAAGCTTAACTACGACTTCAGGAACCCTTTTGTGGTATGTGGTTCCACATATGTCCCGATCTACAGAGGACAGAAAGACGTCTCATGTCCTTACTGCACCGCCCGGTTTGTACCAAACCAGGAAGGAAACATCTGCACGGTCTGTGATCTAGCAGTGATTGGCGCAGACGCATCTGGTTTGTTATGCTCTCCATCTCAAGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

1216

Amino Acids

136.56

Weight (kDa)

6.51

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	2 - 79	1.8e-08	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	3 - 89	4.7e-11	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 162	1.6e-16	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	4 - 164	1.5e-33	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	6 - 128	1.8e-18	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	10 - 82	2.8e-06	WDR3 second beta-propeller domain
WDR55	PF24796	11 - 166	3.7e-13	WDR55
Beta-prop_EML_2	PF23414	13 - 265	2e-18	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	26 - 122	5e-08	G protein beta WD-40 repeat protein
WD40	PF00400	42 - 79	4.2e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	47 - 166	4.1e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	49 - 165	4.9e-17	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	52 - 130	5.4e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	60 - 167	2.7e-21	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	64 - 166	1.1e-08	TEP-1 second beta-propeller
Beta-prop_SCAP	PF24017	66 - 164	1.7e-06	SCAP Beta-propeller
Beta-prop_WDR5	PF25175	71 - 166	8.7e-28	WDR5 beta-propeller domain
WD40	PF00400	84 - 121	3e-08	WD domain, G-beta repeat
EIF3I	PF24805	88 - 164	1e-05	EIF3I
Beta-prop_WDR3_2nd	PF25172	88 - 163	1.1e-08	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	90 - 162	2.2e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	96 - 166	8.7e-13	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	108 - 166	7.9e-13	THOC3 beta-propeller domain
WD40	PF00400	126 - 163	1.1e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	182 - 306	5.1e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	195 - 317	8e-20	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	196 - 312	6.9e-21	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	197 - 292	4.7e-07	TEP-1 second beta-propeller
WD40_Prp19	PF24814	198 - 314	4.7e-19	Prp19 WD40 domain
WD40	PF00400	198 - 231	1.8e-06	WD domain, G-beta repeat
WD40_Gbeta	PF25391	199 - 290	9.6e-06	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	203 - 316	1.4e-15	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	206 - 316	8.8e-06	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	207 - 315	7.6e-10	WDR55
Beta-prop_EML_2	PF23414	211 - 317	4.7e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	211 - 287	4.8e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	215 - 317	5.5e-11	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	223 - 317	1.8e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	241 - 276	6.2e-06	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	340 - 584	1.2e-69	COPA/B second beta-propeller
TPR_COPA_B	PF23953	613 - 771	2.5e-19	COPA/B TPR domain
COPI_C	PF06957	815 - 1216	1.5e-173	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2585
AatII	GACGTC	1 cut(s)	3525
Acc36I	ACCTGC	2 cut(s)	1899, 2585
AccB1I	GGYRCC	1 cut(s)	252
AccII	CGCG	2 cut(s)	77, 1547
AccIII	TCCGGA	1 cut(s)	203
AciI	CCGC	9 cut(s)	289, 676, 1021, 1998, 2582, 2775, 2780, 3417, 3543
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	5 cut(s)	91, 1758, 1939, 1952, 3209
AcsI	RAATTY	3 cut(s)	1393, 2140, 3050
AcuI	CTGAAG	6 cut(s)	822, 833, 1448, 1932, 2385, 3445
AcyI	GRCGYC	2 cut(s)	1072, 3522
AfiI	CCNNNNNNNGG	7 cut(s)	106, 164, 823, 1696, 2717, 3103, 3475
AflIII	ACRYGT	1 cut(s)	1591
AhdI	GACNNNNNGTC	1 cut(s)	858
AjnI	CCWGG	2 cut(s)	1695, 3561
AjuI	GAANNNNNNNTTGG	4 cut(s)	998, 1030, 3156, 3188
AleI	CACNNNNGTG	1 cut(s)	1721
AloI	GAACNNNNNNTCC	2 cut(s)	980, 1012
Alw21I	GWGCWC	5 cut(s)	499, 1574, 2649, 3192, 3237
Alw26I	GTCTC	7 cut(s)	205, 664, 1577, 2337, 3074, 3107, 3529
Alw44I	GTGCAC	1 cut(s)	1570
AlwI	GGATC	5 cut(s)	91, 1758, 1939, 1952, 3209
Ama87I	CYCGRG	2 cut(s)	661, 1286
Aor13HI	TCCGGA	1 cut(s)	203
AoxI	GGCC	2 cut(s)	736, 2423
ApaLI	GTGCAC	1 cut(s)	1570
ApoI	RAATTY	3 cut(s)	1393, 2140, 3050
ArsI	GACNNNNNNTTYG	2 cut(s)	1378, 1410
AseI	ATTAAT	3 cut(s)	1782, 2538, 3146
Asp700I	GAANNNNTTC	1 cut(s)	1904
AspA2I	CCTAGG	2 cut(s)	1103, 2221
AspLEI	GCGC	2 cut(s)	3289, 3608
AspS9I	GGNCC	2 cut(s)	155, 1494
AsuC2I	CCSGG	2 cut(s)	1077, 3547
AsuHPI	GGTGA	9 cut(s)	44, 887, 1469, 1708, 1768, 2429, 2534, 2609, 3232
AsuII	TTCGAA	1 cut(s)	15
AvaI	CYCGRG	2 cut(s)	661, 1286
AvaII	GGWCC	2 cut(s)	155, 1494
AvrII	CCTAGG	2 cut(s)	1103, 2221
BaeGI	GKGCMC	2 cut(s)	1574, 2355
BamHI	GGATCC	1 cut(s)	1944
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	3192, 3237
BbsI	GAAGAC	9 cut(s)	447, 515, 1618, 1655, 2577, 2643, 2943, 3170, 3361
Bbv12I	GWGCWC	5 cut(s)	499, 1574, 2649, 3192, 3237
BbvCI	CCTCAGC	1 cut(s)	1817
BceAI	ACGGC	2 cut(s)	1085, 3296
BciT130I	CCWGG	2 cut(s)	1697, 3563
BciVI	GTATCC	1 cut(s)	718
BclI	TGATCA	2 cut(s)	340, 1831
BcnI	CCSGG	2 cut(s)	1077, 3547
BcoDI	GTCTC	7 cut(s)	205, 664, 1577, 2337, 3074, 3107, 3529
BfmI	CTRYAG	4 cut(s)	1251, 1892, 2586, 3505
BfuAI	ACCTGC	2 cut(s)	1899, 2585
BfuI	GTATCC	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	3395
BglII	AGATCT	3 cut(s)	1153, 1406, 2863
BlnI	CCTAGG	2 cut(s)	1103, 2221
BlpI	GCTNAGC	3 cut(s)	1523, 2319, 2766
BmcAI	AGTACT	1 cut(s)	1658
Bme1390I	CCNGG	4 cut(s)	1077, 1697, 3547, 3563
Bme18I	GGWCC	2 cut(s)	155, 1494
BmeRI	GACNNNNNGTC	1 cut(s)	858
BmeT110I	CYCGRG	2 cut(s)	661, 1286
BmgT120I	GGNCC	2 cut(s)	155, 1494
BmiI	GGNNCC	6 cut(s)	254, 1946, 2744, 2919, 3467, 3487
BmrFI	CCNGG	4 cut(s)	1077, 1697, 3547, 3563
BmrI	ACTGGG	4 cut(s)	634, 1398, 3054, 3368
BmsI	GCATC	8 cut(s)	283, 568, 817, 822, 1216, 1357, 2003, 3623
BmuI	ACTGGG	4 cut(s)	634, 1398, 3054, 3368
BpiI	GAAGAC	9 cut(s)	447, 515, 1618, 1655, 2577, 2643, 2943, 3170, 3361
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	4 cut(s)	1421, 1550, 2273, 2761
Bpu10I	CCTNAGC	1 cut(s)	1817
Bpu1102I	GCTNAGC	3 cut(s)	1523, 2319, 2766
Bpu14I	TTCGAA	1 cut(s)	15
BpuEI	CTTGAG	4 cut(s)	974, 2486, 3176, 3624
BpuMI	CCSGG	2 cut(s)	1077, 3547
Bsa29I	ATCGAT	2 cut(s)	132, 2852
BsaAI	YACGTR	1 cut(s)	1592
BsaHI	GRCGYC	2 cut(s)	1072, 3522
BsaWI	WCCGGW	3 cut(s)	203, 3217, 3645
BsaXI	ACNNNNNCTCC	8 cut(s)	502, 532, 1548, 1578, 2334, 2364, 2475, 2505
Bsc4I	CCNNNNNNNGG	7 cut(s)	106, 164, 823, 1696, 2717, 3103, 3475
Bse3DI	GCAATG	6 cut(s)	728, 1260, 2313, 2357, 2805, 3306
BseAI	TCCGGA	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	1697, 3563
BseCI	ATCGAT	2 cut(s)	132, 2852
BseLI	CCNNNNNNNGG	7 cut(s)	106, 164, 823, 1696, 2717, 3103, 3475
BseMI	GCAATG	6 cut(s)	728, 1260, 2313, 2357, 2805, 3306
BseRI	GAGGAG	2 cut(s)	2496, 3211
BseSI	GKGCMC	2 cut(s)	1574, 2355
BseYI	CCCAGC	1 cut(s)	1382
BsgI	GTGCAG	5 cut(s)	687, 2493, 3071, 3523, 3562
Bsh1236I	CGCG	2 cut(s)	77, 1547
BshFI	GGCC	2 cut(s)	738, 2425
BshNI	GGYRCC	1 cut(s)	252
BshVI	ATCGAT	2 cut(s)	132, 2852
BsiHKAI	GWGCWC	5 cut(s)	499, 1574, 2649, 3192, 3237
BsiHKCI	CYCGRG	2 cut(s)	661, 1286
BsiSI	CCGG	6 cut(s)	204, 1076, 3024, 3218, 3547, 3646
BslI	CCNNNNNNNGG	7 cut(s)	106, 164, 823, 1696, 2717, 3103, 3475
BsmAI	GTCTC	7 cut(s)	205, 664, 1577, 2337, 3074, 3107, 3529
BsmBI	CGTCTC	4 cut(s)	205, 1577, 3074, 3529
BsmI	GAATGC	1 cut(s)	2263
BsnI	GGCC	2 cut(s)	738, 2425
BsoBI	CYCGRG	2 cut(s)	661, 1286
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	6 cut(s)	499, 1574, 2355, 2649, 3192, 3237
Bsp13I	TCCGGA	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	1179
Bsp1720I	GCTNAGC	3 cut(s)	1523, 2319, 2766
Bsp19I	CCATGG	2 cut(s)	65, 317
Bsp68I	TCGCGA	2 cut(s)	77, 1547
BspACI	CCGC	9 cut(s)	289, 676, 1021, 1998, 2582, 2775, 2780, 3417, 3543
BspANI	GGCC	2 cut(s)	738, 2425
BspDI	ATCGAT	2 cut(s)	132, 2852
BspEI	TCCGGA	1 cut(s)	203
BspFNI	CGCG	2 cut(s)	77, 1547
BspHI	TCATGA	5 cut(s)	307, 534, 607, 1579, 1839
BspLI	GGNNCC	6 cut(s)	254, 1946, 2744, 2919, 3467, 3487
BspMAI	CTGCAG	3 cut(s)	1255, 1896, 2590
BspMI	ACCTGC	2 cut(s)	1899, 2585
BspPI	GGATC	5 cut(s)	91, 1758, 1939, 1952, 3209
BspQI	GCTCTTC	1 cut(s)	2055
BspT104I	TTCGAA	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	252
BsrDI	GCAATG	6 cut(s)	728, 1260, 2313, 2357, 2805, 3306
BsrGI	TGTACA	1 cut(s)	1179
BssNI	GRCGYC	2 cut(s)	1072, 3522
BssT1I	CCWWGG	9 cut(s)	65, 317, 1005, 1103, 1719, 2056, 2221, 2716, 3172
Bst2UI	CCWGG	2 cut(s)	1697, 3563
Bst6I	CTCTTC	7 cut(s)	200, 270, 1817, 2055, 2433, 3077, 3115
BstACI	GRCGYC	2 cut(s)	1072, 3522
BstAUI	TGTACA	1 cut(s)	1179
BstBAI	YACGTR	1 cut(s)	1592
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	7 cut(s)	1549, 1574, 2772, 2895, 3237, 3285, 3414
BstDSI	CCRYGG	2 cut(s)	65, 317
BstENI	CCTNNNNNAGG	1 cut(s)	2715
BstFNI	CGCG	2 cut(s)	77, 1547
BstHHI	GCGC	2 cut(s)	3289, 3608
BstMAI	GTCTC	7 cut(s)	205, 664, 1577, 2337, 3074, 3107, 3529
BstNI	CCWGG	2 cut(s)	1697, 3563
BstSCI	CCNGG	4 cut(s)	1075, 1695, 3545, 3561
BstSFI	CTRYAG	4 cut(s)	1251, 1892, 2586, 3505
BstSLI	GKGCMC	2 cut(s)	1574, 2355
BstUI	CGCG	2 cut(s)	77, 1547
BstV2I	GAAGAC	9 cut(s)	447, 515, 1618, 1655, 2577, 2643, 2943, 3170, 3361
BstX2I	RGATCY	4 cut(s)	1153, 1406, 1944, 2863
BstXI	CCANNNNNNTGG	1 cut(s)	1504
BstYI	RGATCY	4 cut(s)	1153, 1406, 1944, 2863
Bsu15I	ATCGAT	2 cut(s)	132, 2852
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	2 cut(s)	738, 2425
BsuTUI	ATCGAT	2 cut(s)	132, 2852
BtgI	CCRYGG	2 cut(s)	65, 317
BtgZI	GCGATG	1 cut(s)	2364
BtsI	GCAGTG	5 cut(s)	1811, 2793, 3253, 3333, 3603
BtuMI	TCGCGA	2 cut(s)	77, 1547
BveI	ACCTGC	2 cut(s)	1899, 2585
Cac8I	GCNNGC	7 cut(s)	1549, 1574, 2772, 2895, 3237, 3285, 3414
CciI	TCATGA	5 cut(s)	307, 534, 607, 1579, 1839
CfoI	GCGC	2 cut(s)	3289, 3608
Cfr13I	GGNCC	2 cut(s)	155, 1494
ClaI	ATCGAT	2 cut(s)	132, 2852
CseI	GACGC	3 cut(s)	1061, 2792, 3620
DraI	TTTAAA	1 cut(s)	2307
DriI	GACNNNNNGTC	1 cut(s)	858
Eam1104I	CTCTTC	7 cut(s)	200, 270, 1817, 2055, 2433, 3077, 3115
Eam1105I	GACNNNNNGTC	1 cut(s)	858
EarI	CTCTTC	7 cut(s)	200, 270, 1817, 2055, 2433, 3077, 3115
Ecl136II	GAGCTC	2 cut(s)	3190, 3235
Eco130I	CCWWGG	9 cut(s)	65, 317, 1005, 1103, 1719, 2056, 2221, 2716, 3172
Eco24I	GRGCYC	2 cut(s)	3192, 3237
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	155, 1494
Eco53kI	GAGCTC	2 cut(s)	3190, 3235
Eco57I	CTGAAG	6 cut(s)	822, 833, 1448, 1932, 2385, 3445
Eco88I	CYCGRG	2 cut(s)	661, 1286
EcoICRI	GAGCTC	2 cut(s)	3190, 3235
EcoNI	CCTNNNNNAGG	1 cut(s)	2715
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	1695, 3561
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	9 cut(s)	65, 317, 1005, 1103, 1719, 2056, 2221, 2716, 3172
EcoT38I	GRGCYC	2 cut(s)	3192, 3237
ErhI	CCWWGG	9 cut(s)	65, 317, 1005, 1103, 1719, 2056, 2221, 2716, 3172
Esp3I	CGTCTC	4 cut(s)	205, 1577, 3074, 3529
FalI	AAGNNNNNCTT	4 cut(s)	1591, 1623, 2448, 2480
FauI	CCCGC	1 cut(s)	2773
FauNDI	CATATG	2 cut(s)	741, 3493
FbaI	TGATCA	2 cut(s)	340, 1831
FriOI	GRGCYC	2 cut(s)	3192, 3237
GlaI	GCGC	2 cut(s)	3288, 3607
GsaI	CCCAGC	1 cut(s)	1386
GsuI	CTGGAG	4 cut(s)	1421, 1550, 2273, 2761
HaeIII	GGCC	2 cut(s)	738, 2425
HapII	CCGG	6 cut(s)	204, 1076, 3024, 3218, 3547, 3646
HgaI	GACGC	3 cut(s)	1061, 2792, 3620
HhaI	GCGC	2 cut(s)	3289, 3608
Hin1I	GRCGYC	2 cut(s)	1072, 3522
Hin6I	GCGC	2 cut(s)	3287, 3606
HinP1I	GCGC	2 cut(s)	3287, 3606
HincII	GTYRAC	2 cut(s)	6, 543
HindII	GTYRAC	2 cut(s)	6, 543
HindIII	AAGCTT	7 cut(s)	711, 950, 1087, 1805, 2150, 2785, 3446
HpaII	CCGG	6 cut(s)	204, 1076, 3024, 3218, 3547, 3646
HphI	GGTGA	9 cut(s)	44, 887, 1469, 1708, 1768, 2429, 2534, 2609, 3232
Hpy166II	GTNNAC	7 cut(s)	6, 543, 622, 866, 895, 1572, 1871
Hpy8I	GTNNAC	7 cut(s)	6, 543, 622, 866, 895, 1572, 1871
Hpy99I	CGWCG	3 cut(s)	146, 452, 864
HpyAV	CCTTC	7 cut(s)	146, 596, 2360, 2450, 2504, 2612, 3560
Hsp92I	GRCGYC	2 cut(s)	1072, 3522
HspAI	GCGC	2 cut(s)	3287, 3606
Kpn2I	TCCGGA	1 cut(s)	203
Ksp22I	TGATCA	2 cut(s)	340, 1831
LguI	GCTCTTC	1 cut(s)	2055
LmnI	GCTCC	6 cut(s)	1604, 2652, 2742, 2814, 2943, 3187
LweI	GCATC	8 cut(s)	283, 568, 817, 822, 1216, 1357, 2003, 3623
MaeIII	GTNAC	6 cut(s)	26, 398, 1211, 1268, 2704, 3425
MflI	RGATCY	4 cut(s)	1153, 1406, 1944, 2863
MhlI	GDGCHC	6 cut(s)	499, 1574, 2355, 2649, 3192, 3237
MluCI	AATT	9 cut(s)	181, 786, 1393, 2062, 2070, 2140, 3050, 3143, 3343
MlyI	GAGTC	4 cut(s)	538, 1102, 1354, 2957
MmeI	TCCRAC	1 cut(s)	3342
MroI	TCCGGA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	1904
MslI	CAYNNNNRTG	6 cut(s)	930, 941, 1721, 1844, 1982, 2798
MspA1I	CMGCKG	2 cut(s)	2780, 3419
MspI	CCGG	6 cut(s)	204, 1076, 3024, 3218, 3547, 3646
MspR9I	CCNGG	4 cut(s)	1077, 1697, 3547, 3563
Mva1269I	GAATGC	1 cut(s)	2263
MvaI	CCWGG	2 cut(s)	1697, 3563
MvnI	CGCG	2 cut(s)	77, 1547
NciI	CCSGG	2 cut(s)	1077, 3547
NcoI	CCATGG	2 cut(s)	65, 317
NdeI	CATATG	2 cut(s)	741, 3493
NlaIV	GGNNCC	6 cut(s)	254, 1946, 2744, 2919, 3467, 3487
NmuCI	GTSAC	3 cut(s)	398, 1211, 2704
NruI	TCGCGA	2 cut(s)	77, 1547
NspV	TTCGAA	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	1721
PaeR7I	CTCGAG	1 cut(s)	1286
PagI	TCATGA	5 cut(s)	307, 534, 607, 1579, 1839
PaqCI	CACCTGC	1 cut(s)	2585
PciSI	GCTCTTC	1 cut(s)	2055
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 147
PctI	GAATGC	1 cut(s)	2263
PdmI	GAANNNNTTC	1 cut(s)	1904
PflFI	GACNNNGTC	1 cut(s)	446
PleI	GAGTC	4 cut(s)	538, 1102, 1353, 2956
PpsI	GAGTC	4 cut(s)	538, 1102, 1353, 2956
Ppu21I	YACGTR	1 cut(s)	1592
PpuMI	RGGWCCY	1 cut(s)	155
PshBI	ATTAAT	3 cut(s)	1782, 2538, 3146
Psp124BI	GAGCTC	2 cut(s)	3192, 3237
Psp1406I	AACGTT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	1695, 3561
PspFI	CCCAGC	1 cut(s)	1382
PspGI	CCWGG	2 cut(s)	1695, 3561
PspN4I	GGNNCC	6 cut(s)	254, 1946, 2744, 2919, 3467, 3487
PspPI	GGNCC	2 cut(s)	155, 1494
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	3 cut(s)	1255, 1896, 2590
PsuI	RGATCY	4 cut(s)	1153, 1406, 1944, 2863
PsyI	GACNNNGTC	1 cut(s)	446
RruI	TCGCGA	2 cut(s)	77, 1547
RseI	CAYNNNNRTG	6 cut(s)	930, 941, 1721, 1844, 1982, 2798
SacI	GAGCTC	2 cut(s)	3192, 3237
SapI	GCTCTTC	1 cut(s)	2055
Sau96I	GGNCC	2 cut(s)	155, 1494
ScaI	AGTACT	1 cut(s)	1658
SchI	GAGTC	4 cut(s)	538, 1102, 1354, 2957
ScrFI	CCNGG	4 cut(s)	1077, 1697, 3547, 3563
SduI	GDGCHC	6 cut(s)	499, 1574, 2355, 2649, 3192, 3237
SfaNI	GCATC	8 cut(s)	283, 568, 817, 822, 1216, 1357, 2003, 3623
SfcI	CTRYAG	4 cut(s)	1251, 1892, 2586, 3505
Sfr274I	CTCGAG	1 cut(s)	1286
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	2 cut(s)	155, 1494
SlaI	CTCGAG	1 cut(s)	1286
SmiMI	CAYNNNNRTG	6 cut(s)	930, 941, 1721, 1844, 1982, 2798
SmlI	CTYRAG	5 cut(s)	953, 1286, 2465, 3191, 3639
SmoI	CTYRAG	5 cut(s)	953, 1286, 2465, 3191, 3639
Sse9I	AATT	9 cut(s)	181, 786, 1393, 2062, 2070, 2140, 3050, 3143, 3343
SsiI	CCGC	9 cut(s)	289, 676, 1021, 1998, 2582, 2775, 2780, 3417, 3543
SspI	AATATT	2 cut(s)	1034, 2451
SstI	GAGCTC	2 cut(s)	3192, 3237
StyD4I	CCNGG	4 cut(s)	1075, 1695, 3545, 3561
StyI	CCWWGG	9 cut(s)	65, 317, 1005, 1103, 1719, 2056, 2221, 2716, 3172
TaqI	TCGA	7 cut(s)	15, 132, 141, 1287, 2790, 2852, 3111
TaqII	GACCGA	1 cut(s)	3449
TasI	AATT	9 cut(s)	181, 786, 1393, 2062, 2070, 2140, 3050, 3143, 3343
TatI	WGTACW	3 cut(s)	1179, 1656, 1794
TauI	GCSGC	3 cut(s)	2585, 2777, 3419
TseFI	GTSAC	3 cut(s)	398, 1211, 2704
Tsp45I	GTSAC	3 cut(s)	398, 1211, 2704
TspGWI	ACGGA	6 cut(s)	341, 388, 806, 848, 2957, 3056
Tth111I	GACNNNGTC	1 cut(s)	446
VneI	GTGCAC	1 cut(s)	1570
VpaK11BI	GGWCC	2 cut(s)	155, 1494
VspI	ATTAAT	3 cut(s)	1782, 2538, 3146
XagI	CCTNNNNNAGG	1 cut(s)	2715
XapI	RAATTY	3 cut(s)	1393, 2140, 3050
XbaI	TCTAGA	1 cut(s)	2860
XcmI	CCANNNNNNNNNTGG	4 cut(s)	2063, 2819, 3100, 3358
XhoI	CTCGAG	1 cut(s)	1286
XmaJI	CCTAGG	2 cut(s)	1103, 2221
XmnI	GAANNNNTTC	1 cut(s)	1904
ZraI	GACGTC	1 cut(s)	3523
ZrmI	AGTACT	1 cut(s)	1658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.