MD10G1250100.v1.1

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
34279938 .. 34281142
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1250100.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGCCAATCATCTGCGGAGGAGATTGGCCCTTGTTGAGGGTCATGAGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAAGAATATTGAGGAAGATTATGAAGAGGCTGCAGATGCTGATTGGGGAGAGGAGTTGGATCTTGTTGACATTGATACTCCAAAAACTGCCAGCAATGCCCGTTCTTCTGTGTTTGTTGCCCCAACTCCAGGTATGCCTGTAAGCCAAACCTGGTCCCAGAAATCATCTCTTGTTGCTGAACATGCTACTGCTGGGAATTTCGATATTGCAATGCGTTTGTTGAGCAGGGAGCTGGGTGTAAAGAACTTTGATCCCTTGAGACAATTATTTCTCGATTTACACATGGGCAGTCATATGTATCTACATGCCTTCTCGGCAGCTCATGTGCTCACCGTGGCCATTGAGAGGGGATGGAGTGAATCAGCTACACCTAAAGTTAGGGGTCCTCCTGCTCTTGTATTTAAATTCTCAGAGCTAGAAGAGAAGCTTAAGGCGGGTTACAAGGCCACAACGCAAGGGAAATTTGCTGATGCTTTACGTCTTCTCCTTGGTATTCTGTATACTATTCCTCTGATCGTAGTTGATTCAAAGAGAGAGGTTGATGAAGTAAAAGAATTAATTATCATTGTAAAGGAGTATGTTCTAGGTTTGAAGATGGAGATTAAGAGGAAGGAACTTAAAGGCGATCCGGTTCGCCAACAGGAGCTAGCTGCTTACTTCACCCACTGCAACCTTCAGATGCCTCACTTGAGACTTGCATTACTAAATGCCATGAGTGTTTGCTATAAGGCTGGTAATCTCAACACGGCAGCTAACTTTGCCAGGCGACTTTTGGAAACCAACCCCACCATTGAAAACCATGCAAAGACTGCAAGACAAATCCTGCAAGCTGCCGAAAAGAACATGACTGATGCAACCCAGCTAAACTATGATTTCAGAAACCCATTTGTCGTTTGTGGGGCAACATACTTGCCTATTTACCGTGGACAGAAGGATGTGTCATGCCCATACTGCAGTTCTCGGTTTGTTCCGGACCAGGAAGGGAAGCTCTGTTCTTTTGTGATCTTTCAGTGGTTGGATCAGATGCATCTGGTTTGCTCTGTTCTCCTACCCAGATAA

Protein Analysis

380

Amino Acids

42.46

Weight (kDa)

6.33

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COPI_C PF06957 33 - 359 1.6e-142 Coatomer (COPI) alpha subunit C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 581
AccIII TCCGGA 1 cut(s) 1051
AciI CCGC 2 cut(s) 15, 515
AclWI GGATC 4 cut(s) 147, 326, 701, 1107
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 3 cut(s) 277, 485, 542
AcuI CTGAAG 1 cut(s) 740
AfiI CCNNNNNNNGG 3 cut(s) 36, 209, 426
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 3 cut(s) 609, 673, 875
AjnI CCWGG 4 cut(s) 208, 230, 842, 1056
AloI GAACNNNNNNTCC 2 cut(s) 1057, 1089
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 334, 766
AlwI GGATC 4 cut(s) 147, 326, 701, 1107
AlwNI CAGNNNCTG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 1051
AoxI GGCC 3 cut(s) 26, 417, 525
ApeKI GCWGC 5 cut(s) 110, 398, 731, 830, 911
ApoI RAATTY 3 cut(s) 277, 485, 542
AseI ATTAAT 1 cut(s) 638
AspS9I GGNCC 4 cut(s) 27, 234, 464, 1054
AsuHPI GGTGA 2 cut(s) 403, 733
AsuNHI GCTAGC 1 cut(s) 727
AvaII GGWCC 3 cut(s) 234, 464, 1054
BalI TGGCCA 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 5 cut(s) 97, 410, 718, 842, 898
BccI CCATC 2 cut(s) 426, 670
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 4 cut(s) 210, 232, 844, 1058
BcoDI GTCTC 2 cut(s) 334, 766
BfaI CTAG 3 cut(s) 497, 665, 728
BfmI CTRYAG 2 cut(s) 111, 1033
BfrI CTTAAG 1 cut(s) 509
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 5 cut(s) 111, 399, 732, 831, 912
BlsI GCNGC 5 cut(s) 112, 400, 733, 832, 913
Bme1390I CCNGG 4 cut(s) 210, 232, 844, 1058
Bme18I GGWCC 3 cut(s) 234, 464, 1054
BmgT120I GGNCC 4 cut(s) 27, 234, 464, 1054
BmiI GGNNCC 2 cut(s) 236, 465
BmrFI CCNGG 4 cut(s) 210, 232, 844, 1058
BmsI GCATC 6 cut(s) 106, 541, 750, 922, 1095, 1117
BmtI GCTAGC 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 358, 790
BsaJI CCNNGG 3 cut(s) 414, 568, 1003
BsaWI WCCGGW 2 cut(s) 709, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 209, 426
Bse3DI GCAATG 2 cut(s) 181, 297
BseAI TCCGGA 1 cut(s) 1051
BseBI CCWGG 4 cut(s) 210, 232, 844, 1058
BseDI CCNNGG 3 cut(s) 414, 568, 1003
BseGI GGATG 2 cut(s) 437, 1021
BseLI CCNNNNNNNGG 3 cut(s) 36, 209, 426
BseMI GCAATG 2 cut(s) 181, 297
BseMII CTCAG 1 cut(s) 504
BseRI GAGGAG 2 cut(s) 33, 146
BseXI GCAGC 5 cut(s) 97, 410, 718, 842, 898
BseYI CCCAGC 3 cut(s) 272, 313, 939
BshFI GGCC 3 cut(s) 28, 419, 527
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 710, 1052
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 3 cut(s) 36, 209, 426
BsmAI GTCTC 2 cut(s) 334, 766
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 3 cut(s) 28, 419, 527
Bsp1286I GDGCHC 1 cut(s) 411
Bsp13I TCCGGA 1 cut(s) 1051
Bsp143I GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
BspACI CCGC 2 cut(s) 15, 515
BspANI GGCC 3 cut(s) 28, 419, 527
BspCNI CTCAG 1 cut(s) 503
BspEI TCCGGA 1 cut(s) 1051
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 236, 465
BspMAI CTGCAG 2 cut(s) 115, 1037
BspOI GCTAGC 1 cut(s) 731
BspPI GGATC 4 cut(s) 147, 326, 701, 1107
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 181, 297
BssECI CCNNGG 3 cut(s) 414, 568, 1003
BssMI GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
BssNAI GTATAC 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 568
Bst1107I GTATAC 1 cut(s) 582
Bst2UI CCWGG 4 cut(s) 210, 232, 844, 1058
Bst4CI ACNGT 2 cut(s) 415, 1004
Bst6I CTCTTC 2 cut(s) 99, 495
BstAFI CTTAAG 1 cut(s) 509
BstAPI GCANNNNNTGC 1 cut(s) 890
BstC8I GCNNGC 3 cut(s) 172, 729, 909
BstDEI CTNAG 1 cut(s) 490
BstDSI CCRYGG 2 cut(s) 414, 1003
BstENI CCTNNNNNAGG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 437, 1021
BstKTI GATC 6 cut(s) 142, 334, 597, 709, 1086, 1102
BstMAI GTCTC 2 cut(s) 334, 766
BstMBI GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
BstMWI GCNNNNNNNGC 7 cut(s) 116, 176, 263, 395, 839, 890, 1032
BstNI CCWGG 4 cut(s) 210, 232, 844, 1058
BstNSI RCATGY 2 cut(s) 266, 389
BstSCI CCNGG 4 cut(s) 208, 230, 842, 1056
BstSFI CTRYAG 2 cut(s) 111, 1033
BstV1I GCAGC 5 cut(s) 97, 410, 718, 842, 898
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BstZ17I GTATAC 1 cut(s) 582
BsuRI GGCC 3 cut(s) 28, 419, 527
BtgI CCRYGG 2 cut(s) 414, 1003
BtsCI GGATG 2 cut(s) 437, 1021
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 745, 1097
Cac8I GCNNGC 3 cut(s) 172, 729, 909
CaiI CAGNNNCTG 1 cut(s) 119
CciI TCATGA 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 27, 234, 464, 1054
CsiI ACCWGGT 1 cut(s) 230
CviAII CATG 9 cut(s) 43, 263, 364, 386, 404, 793, 881, 925, 1023
DdeI CTNAG 1 cut(s) 490
DpnI GATC 6 cut(s) 141, 333, 596, 708, 1085, 1101
DpnII GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
DraI TTTAAA 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 99, 495
EarI CTCTTC 2 cut(s) 99, 495
Eco130I CCWWGG 1 cut(s) 568
Eco47I GGWCC 3 cut(s) 234, 464, 1054
Eco57I CTGAAG 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 4 cut(s) 208, 230, 842, 1056
EcoT14I CCWWGG 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 9 cut(s) 46, 266, 367, 389, 407, 796, 884, 928, 1026
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 1 cut(s) 220
FatI CATG 9 cut(s) 42, 262, 363, 385, 403, 792, 880, 924, 1022
FauI CCCGC 1 cut(s) 508
FauNDI CATATG 1 cut(s) 375
FblI GTMKAC 1 cut(s) 581
Fnu4HI GCNGC 5 cut(s) 111, 399, 732, 831, 912
FokI GGATG 2 cut(s) 444, 1028
Fsp4HI GCNGC 5 cut(s) 111, 399, 732, 831, 912
FspBI CTAG 3 cut(s) 497, 665, 728
GluI GCNGC 5 cut(s) 111, 399, 732, 831, 912
GsaI CCCAGC 3 cut(s) 276, 317, 943
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 3 cut(s) 28, 419, 527
HapII CCGG 2 cut(s) 710, 1052
Hin1II CATG 9 cut(s) 46, 266, 367, 389, 407, 796, 884, 928, 1026
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 440, 605
HpaII CCGG 2 cut(s) 710, 1052
HphI GGTGA 2 cut(s) 403, 733
Hpy166II GTNNAC 3 cut(s) 148, 582, 1007
Hpy188I TCNGA 5 cut(s) 493, 594, 759, 959, 1104
Hpy188III TCNNGA 4 cut(s) 43, 68, 353, 1052
Hpy8I GTNNAC 3 cut(s) 148, 582, 1007
HpyAV CCTTC 5 cut(s) 400, 685, 764, 1006, 1055
HpyCH4III ACNGT 2 cut(s) 415, 1004
HpyCH4IV ACGT 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 176, 263, 395, 839, 890, 1032
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 9 cut(s) 46, 266, 367, 389, 407, 796, 884, 928, 1026
Kpn2I TCCGGA 1 cut(s) 1051
Kzo9I GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
LmnI GCTCC 2 cut(s) 310, 724
Lsp1109I GCAGC 5 cut(s) 97, 410, 718, 842, 898
LweI GCATC 6 cut(s) 106, 541, 750, 922, 1095, 1117
MabI ACCWGGT 1 cut(s) 230
MaeI CTAG 3 cut(s) 497, 665, 728
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 1 cut(s) 518
MalI GATC 6 cut(s) 141, 333, 596, 708, 1085, 1101
MboI GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
MboII GAAGA 6 cut(s) 107, 116, 177, 512, 554, 685
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 6 cut(s) 277, 344, 485, 542, 635, 639
MluNI TGGCCA 1 cut(s) 419
MmeI TCCRAC 2 cut(s) 117, 1077
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 1 cut(s) 1110
MroI TCCGGA 1 cut(s) 1051
MscI TGGCCA 1 cut(s) 419
MseI TTAA 5 cut(s) 483, 510, 638, 684, 699
Msp20I TGGCCA 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 2 cut(s) 710, 1052
MspR9I CCNGG 4 cut(s) 210, 232, 844, 1058
MvaI CCWGG 4 cut(s) 210, 232, 844, 1058
MwoI GCNNNNNNNGC 7 cut(s) 116, 176, 263, 395, 839, 890, 1032
NdeI CATATG 1 cut(s) 375
NdeII GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 9 cut(s) 46, 266, 367, 389, 407, 796, 884, 928, 1026
NlaIV GGNNCC 2 cut(s) 236, 465
NmeAIII GCCGAG 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 1110
NspI RCATGY 2 cut(s) 266, 389
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 2 cut(s) 440, 605
PkrI GCNGC 5 cut(s) 112, 400, 733, 832, 913
PpuMI RGGWCCY 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 4 cut(s) 208, 230, 842, 1056
PspFI CCCAGC 3 cut(s) 272, 313, 939
PspGI CCWGG 4 cut(s) 208, 230, 842, 1056
PspN4I GGNNCC 2 cut(s) 236, 465
PspPI GGNCC 4 cut(s) 27, 234, 464, 1054
PspPPI RGGWCCY 1 cut(s) 464
PstI CTGCAG 2 cut(s) 115, 1037
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 139
SaqAI TTAA 5 cut(s) 483, 510, 638, 684, 699
SatI GCNGC 5 cut(s) 111, 399, 732, 831, 912
Sau3AI GATC 6 cut(s) 139, 331, 594, 706, 1083, 1099
Sau96I GGNCC 4 cut(s) 27, 234, 464, 1054
ScrFI CCNGG 4 cut(s) 210, 232, 844, 1058
SduI GDGCHC 1 cut(s) 411
SexAI ACCWGGT 1 cut(s) 230
SfaNI GCATC 6 cut(s) 106, 541, 750, 922, 1095, 1117
SfcI CTRYAG 2 cut(s) 111, 1033
SinI GGWCC 3 cut(s) 234, 464, 1054
SmiI ATTTAAAT 1 cut(s) 484
SmlI CTYRAG 3 cut(s) 337, 509, 769
SmoI CTYRAG 3 cut(s) 337, 509, 769
Sse9I AATT 6 cut(s) 277, 344, 485, 542, 635, 639
SsiI CCGC 2 cut(s) 15, 515
SspI AATATT 2 cut(s) 54, 88
SspMI CTAG 3 cut(s) 497, 665, 728
StyD4I CCNGG 4 cut(s) 208, 230, 842, 1056
StyI CCWWGG 1 cut(s) 568
SwaI ATTTAAAT 1 cut(s) 484
TaaI ACNGT 2 cut(s) 415, 1004
TaiI ACGT 1 cut(s) 562
TaqI TCGA 2 cut(s) 282, 354
TasI AATT 6 cut(s) 277, 344, 485, 542, 635, 639
TfiI GAWTC 2 cut(s) 440, 605
Tru1I TTAA 5 cut(s) 483, 510, 638, 684, 699
Tru9I TTAA 5 cut(s) 483, 510, 638, 684, 699
TscAI CASTG 2 cut(s) 752, 1097
TseI GCWGC 5 cut(s) 110, 398, 731, 830, 911
TspDTI ATGAA 2 cut(s) 117, 639
TspRI CASTG 2 cut(s) 752, 1097
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 3 cut(s) 234, 464, 1054
VspI ATTAAT 1 cut(s) 638
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 3 cut(s) 277, 485, 542
XceI RCATGY 2 cut(s) 266, 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XmiI GTMKAC 1 cut(s) 581
XspI CTAG 3 cut(s) 497, 665, 728
Zsp2I ATGCAT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.