Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

6931861 .. 6941535

Gene Structure 9675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3657 bp

ATGTTGACCAAGTTCGAGACGAAGAGTAACAGAGTGAAGGGACTGAGCTTCCACACTAAGAGGCCGTGGATCCTCGCGAGTCTGCACAGTGGTGTGATCCAGCTATGGGACTACCGTATGGGGACTCTCATTGATCGGTTCGATGAGCACGACGGTCCTGTGCGAGGTGTCCATTTCCACAAATCTCAGCCTCTGTTTGTTTCTGGAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTTGGGCATCTAGATTATATTCGTACTGTGCAATTTCACCATGAGTACCCATGGATTGTGAGTGCCAGTGATGACCAGACTATTCGCATATGGAACTGGCAGTCCCGCACTTGTATTTCAGTTTTGACAGGCCACAATCATTATGTTATGTGTGCCTCATTCCATCCTAAAGAAGACCTTGTCGTATCTGCCTCCTTGGATCAGACTGTCCGTGTTTGGGATATTGGTTCTCTGAAAAAGAAGACTGTGTCCCCAGCAGATGACATACTGCGACTAAGTCAGATGAACACAGATCTTTTTGGTGGTGTTGATGCTGTTGTTAAGTATGTATTGGAAGGGCATGACCGAGGTGTCAATTGGGCTTCATTCCACCCCAACCTGCCTCTCATTGTCTCAGGAGCAGATGATCGCCAAGTTAAATTGTGGCGGATGAATGATACCAAGGCTTGGGAAGTGGACACGTTGAGAGGACACATGAATAATGTTTCATGTGTAATGTTTCATGCTAAGCAGGATATAATCATATCCAACTCAGAGGACAAAAGTATCCGTGTCTGGGATGTAACAAAGCGAACTGGAATTCAAACTTTCCGACGAGAGCATGATCGCTTTTGGATTCTTTCATCTCACCCTGAAATGAATCTATTAGCAGCAGGTCATGACAGTGGGATGATCGTCTTTAAGTTAGAGAGGGAAAGACCAGCCTTTGCCGTCAGTGGTGATTCTCTGTTCTATGCTAAAGACCGCTTTTTGAAGTACTATGAGTTTTCAACCCAAAGAGATACACAAGTTATTCCTATTCGACGACCTGGTTCTATCACTTTAAATCAAAGCCCAAGGACCCTTTCTTACTGTCCTTCAGAAAATGCCGTTCTTGTTTGCTCAGACTTGGACGGGGGATCCTATGAGTTGTATTTCATACCAAGAGACAGCATTACAAGGGGTGACAGTACTCAAGATGCTAAGAGAGGTGTTGGTGGTTCAGCTGTGTTTGTAGCACGGAATAGGTTTGCTGTGCTTGAGAAAACCAGCAACTCTGTGTTGGTAAAGAATTTGAAGAATGAAGTTGTCAAAAAGACTCCCCTTCCTTTTGCTGCTGATGCAATATTTTACGCTGGTACAGGTAATTTGCTGTGCAGGTCAGACGACAGAGTGTTTATATTTGATCTCCAGCAGCGGACTGTTCTTGGTGAACTTCAAACCCCCTTCATCAAGTATGTTGTTTGGTCTAACGACATGGAAAGTATTGCCTTGCTGAGCAAACATGCCATAATTATTGCTAGCAAGAGGCTTGTGCACCAGTGCACTCTTCATGAGACAATCCGTGTAAAGAGTGGTGGTTGGGATGACAAAGGTGTTTTCATTTATTCAACCCTGAATCATATCAAGTATTGTCTACCTAATGGAGATAGTGGAATAATAAGAACCCTTGATGTTCCTATCTACATTACGAAAGTTTCTGGAAATACCATCTTTTGCTTGGATCGGGATGGGAAAAATAAAGCCATAGTTATTGATGCCACTGAATACATCTTCAAGTTATCTCTTTTGAAGAAGAGATATGACCATGTCATGAGCATGATTAGGAGCTCAAAGCTCTGTGGGCAGGCGATGATAGCTTATCTGCAACAAAAGGGGTTCCCTGAAGTGGCTCTCCATTTTGTGAAAGATGAAAGAACGCGATTCAACCTGGCGTTAGAGAGTGGGAATATTCAAATAGCGGTTGAATCTGCTACAGCTATTGATGAAAAAGATTACTGGTATAGGTTGGGTGTGGAGGCTCTTCGACAGGGCAATGCAGGTATTGTAGAGTTTGCCTACCAGAGGACCAAAAATTTTGAAAGGCTGTCTTTCCTTTATCTCGTAAATGGTAATACACAGAAATTGTCCAAGATGCTGAAAATTGCTGAGGTCAAGAATGATGTCATGGGTCAGTTTCACAATGCACTGTATCTGGGGAATGTTGAGGAGCGCATTAAGATATTAGAGAATGTTGGCCACTTGCCCCTTGCTTATATTACAGCGAAAACTCATGGGCTGCATGATGTTGCTGAAAGGCTAGCATCTGAGTTGGGGGATAATCTTCCAACTTTGCCCGAGGGTAAAGCACCACCGACTCTTTTGACTCCCCCGACACCAATTATTTGTGGTAGTGATTGGCCACTTCTCACAGTAATGAGAGGTATGTTTGAAGGTGAGTTGGATAATATTGCTGGGGGCAATGTGGTTGATGAGGATGACAGTGTTGCTGGTGACTGGGCTGAGACATTGGATGATGTTGATACGTTACAAAATGGAGTTGTCCCTCCAGGTTTGGAAGGTGAGGAAGTGCCTGGAGAAGAAGAAGGAGAGGTAGGATGGGAGCTTGAAGAGCTGGAGCTCCCCCCTGAAGCTGACACACCTAGGGCTTTTGTTAATACCCATTCATCAGTTTTTGCCGCTCCAACTACCGGCATGCCTGTAAGCCAGATCTGGATCCAGAGATCATCTCTTGCTGCTGAGCATGCTGCTGCAGGCCATTTTGATACTGCGATGCGGTTGCTGAACAGGCAACTTGGGATTAAAAACTTCACTCCTTTAAGGCAATTGTTCCTCGATCTTCACTCTGGAAGCCATAGCTATCTACGGGCATTTTCGTCTGCTCCGGTGATATCACTAGCAGTTGAGCGTGGGTGGAATGAATCTGCCTCACCACTTGTGAGAAACCCACCAGCACTTGTGTTCAATTTTTCTCAGTTAGAAGAGAAGCTCAAAGCTGGTTACAAGGCTACTTCTGCTGGGAAGTTCACTGATGCTCTCAAGTTCTTTCTTAGCATTCTTCATACAATTCCTTTGATTGTTGTTGATTCAAGGAGAGAAGTTGATGAAGTTAAAGAGTTAATTGTAATAGTCAAGGAATATGTTCTGGGATTGCAGATGGAGCTGAAGAGAAGGGAAATAAGAGATGATCCGCCAGTACGTCAGCAGGAGCTTGCAGCTTATTTCACACACTGCAATCTTCAATTGCCTCACTTAAGGCTTGCCTTGCAAAGTGCAATGACAGCTTGCTACAAGGCGAAGAACCTTGCCACTGCAGCTAACTTTGCCAGACGTTTATTGGAGACGAACCCCACTGTTGAGAATCAGGCAAAGTTAGCCAGGCAAGTGCTGCAGGCTGCAGAGAAGAATATGACTGATGCTTTTCAACTGAACTATGACTTCAGAAATCCATTCGTCACTTGTGGGGCAACGTATGTACCAATTTACCGAGGACAGAAGGATGTTTCTTGCCCTTACTGTAGCTCACGGTTTGTGCCAAGCCAAGAAGGGAAGCTCTGTACTGTTTGTGATCTTGCAATGGTTGGCGCAGATGCTTCAGGGTTGCTATGTTCTCCATCTCAGATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

1219

Amino Acids

137.05

Weight (kDa)

6.86

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	2 - 79	3e-09	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	3 - 89	3.1e-10	WDR5 beta-propeller domain
WDR55	PF24796	3 - 167	7e-13	WDR55
Beta-prop_WDR3_1st	PF25173	4 - 164	2.4e-32	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 162	9.7e-16	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	6 - 127	1.5e-17	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	13 - 265	2.1e-16	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	15 - 82	8e-06	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	26 - 122	2.2e-07	G protein beta WD-40 repeat protein
WD40	PF00400	42 - 79	5e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	48 - 168	5.7e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	49 - 166	9e-17	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	50 - 167	5.2e-31	WDR5 beta-propeller domain
WD40_Prp19	PF24814	60 - 168	3.7e-21	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	63 - 167	1.6e-08	TEP-1 second beta-propeller
Beta-prop_SCAP	PF24017	66 - 166	8.6e-06	SCAP Beta-propeller
WD40	PF00400	84 - 121	3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	88 - 163	6e-09	WDR3 second beta-propeller domain
EIF3I	PF24805	88 - 166	4.2e-06	EIF3I
Beta-prop_EIPR1	PF23609	91 - 162	2.8e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	96 - 169	3.9e-13	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	108 - 169	6.4e-13	THOC3 beta-propeller domain
WD40	PF00400	126 - 163	1.1e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	184 - 305	1.4e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	193 - 317	2.2e-19	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	194 - 314	6.2e-18	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	195 - 307	1.2e-21	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	196 - 290	1.4e-07	TEP-1 second beta-propeller
WD40	PF00400	198 - 231	9.9e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	198 - 288	5.4e-06	G protein beta WD-40 repeat protein
EIF3I	PF24805	199 - 287	6.8e-07	EIF3I
Beta-prop_WDR3_2nd	PF25172	200 - 317	1.4e-09	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	202 - 303	4.5e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	205 - 316	1.1e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	206 - 316	5.6e-15	THOC3 beta-propeller domain
WDR55	PF24796	207 - 315	3.5e-10	WDR55
WD40_WDHD1_1st	PF24817	211 - 287	4.2e-10	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	212 - 317	3.9e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	223 - 318	1.7e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	241 - 276	3.1e-06	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	340 - 584	1.3e-67	COPA/B second beta-propeller
TPR_COPA_B	PF23953	627 - 773	8.3e-20	COPA/B TPR domain
COPI_C	PF06957	816 - 1218	1.5e-161	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
Acc36I	ACCTGC	4 cut(s)	654, 911, 1395, 2057
AccB7I	CCANNNNNTGG	1 cut(s)	714
AccBSI	CCGCTC	1 cut(s)	2708
AccI	GTMKAC	1 cut(s)	1663
AccII	CGCG	2 cut(s)	77, 1948
AciI	CCGC	8 cut(s)	373, 694, 1012, 1444, 1988, 2706, 2803, 3218
AcoI	YGGCCR	2 cut(s)	2263, 2426
AcsI	RAATTY	3 cut(s)	846, 1318, 2101
AcuI	CTGAAG	6 cut(s)	1110, 1932, 2676, 3212, 3451, 3606
AfaI	GTAC	8 cut(s)	292, 314, 1025, 1219, 1387, 3225, 3504, 3586
AfiI	CCNNNNNNNGG	8 cut(s)	106, 164, 484, 714, 823, 1915, 2091, 2717
AflII	CTTAAG	1 cut(s)	3280
AflIII	ACRYGT	1 cut(s)	726
AjnI	CCWGG	5 cut(s)	1075, 1956, 2575, 2599, 3404
AjuI	GAANNNNNNNTTGG	2 cut(s)	1096, 1128
AleI	CACNNNNGTG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	353, 385
Alw21I	GWGCWC	5 cut(s)	150, 1566, 1574, 1859, 2649
Alw26I	GTCTC	6 cut(s)	11, 664, 1188, 1577, 2525, 3362
Alw44I	GTGCAC	2 cut(s)	1562, 1570
AlwNI	CAGNNNCTG	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	2363
AoxI	GGCC	5 cut(s)	62, 397, 2263, 2426, 2782
ApaLI	GTGCAC	2 cut(s)	1562, 1570
ApoI	RAATTY	3 cut(s)	846, 1318, 2101
Asp700I	GAANNNNTTC	1 cut(s)	3168
AspA2I	CCTAGG	1 cut(s)	2669
AspLEI	GCGC	2 cut(s)	2241, 3614
AspS9I	GGNCC	3 cut(s)	155, 1107, 2094
AsuNHI	GCTAGC	2 cut(s)	1547, 2326
AvaI	CYCGRG	1 cut(s)	2363
AvaII	GGWCC	3 cut(s)	155, 1107, 2094
AvrII	CCTAGG	1 cut(s)	2669
BaeGI	GKGCMC	2 cut(s)	1566, 1574
BaeI	ACNNNNGTAYC	6 cut(s)	796, 829, 1041, 1074, 3486, 3519
BalI	TGGCCA	2 cut(s)	2265, 2428
BamHI	GGATCC	3 cut(s)	69, 1166, 2742
BanII	GRGCYC	2 cut(s)	1859, 2649
BbsI	GAAGAC	2 cut(s)	447, 515
Bbv12I	GWGCWC	5 cut(s)	150, 1566, 1574, 1859, 2649
BbvCI	CCTCAGC	1 cut(s)	2175
BccI	CCATC	6 cut(s)	438, 1745, 1751, 2619, 3178, 3649
BceAI	ACGGC	3 cut(s)	49, 962, 1121
BcgI	CGANNNNNNTGC	2 cut(s)	2788, 2822
BciT130I	CCWGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
BciVI	GTATCC	1 cut(s)	824
BcoDI	GTCTC	6 cut(s)	11, 664, 1188, 1577, 2525, 3362
BfaI	CTAG	5 cut(s)	278, 1548, 2327, 2670, 2924
BfmI	CTRYAG	6 cut(s)	2001, 2778, 3339, 3416, 3423, 3544
BfrI	CTTAAG	1 cut(s)	3280
BfuAI	ACCTGC	4 cut(s)	654, 911, 1395, 2057
BfuI	GTATCC	1 cut(s)	824
BglII	AGATCT	2 cut(s)	559, 2736
BlnI	CCTAGG	1 cut(s)	2669
BlpI	GCTNAGC	3 cut(s)	774, 1523, 2766
BmcAI	AGTACT	2 cut(s)	1025, 1219
Bme1390I	CCNGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
Bme18I	GGWCC	3 cut(s)	155, 1107, 2094
BmeT110I	CYCGRG	1 cut(s)	2363
BmgT120I	GGNCC	3 cut(s)	155, 1107, 2094
BmiI	GGNNCC	5 cut(s)	71, 1109, 1168, 1907, 2744
BmrFI	CCNGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
BmrI	ACTGGG	1 cut(s)	2533
BmtI	GCTAGC	2 cut(s)	1551, 2330
BmuI	ACTGGG	1 cut(s)	2533
BpiI	GAAGAC	2 cut(s)	447, 515
BplI	GAGNNNNNCTC	2 cut(s)	2740, 2772
BpmI	CTGGAG	5 cut(s)	225, 1421, 2559, 2622, 2663
Bpu10I	CCTNAGC	1 cut(s)	2175
Bpu1102I	GCTNAGC	3 cut(s)	774, 1523, 2766
BpuEI	CTTGAG	3 cut(s)	1206, 1307, 3050
BsaBI	GATNNNNATC	1 cut(s)	2741
BsaJI	CCNNGG	9 cut(s)	65, 317, 462, 613, 708, 1103, 2364, 2669, 3514
BsaWI	WCCGGW	1 cut(s)	2911
Bsc4I	CCNNNNNNNGG	8 cut(s)	106, 164, 484, 714, 823, 1915, 2091, 2717
Bse118I	RCCGGY	1 cut(s)	2717
Bse1I	ACTGG	7 cut(s)	333, 368, 847, 1567, 2030, 2528, 3221
Bse3DI	GCAATG	4 cut(s)	2068, 2494, 3309, 3609
Bse8I	GATNNNNATC	1 cut(s)	2741
BseBI	CCWGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
BseDI	CCNNGG	9 cut(s)	65, 317, 462, 613, 708, 1103, 2364, 2669, 3514
BseJI	GATNNNNATC	1 cut(s)	2741
BseLI	CCNNNNNNNGG	8 cut(s)	106, 164, 484, 714, 823, 1915, 2091, 2717
BseMI	GCAATG	4 cut(s)	2068, 2494, 3309, 3609
BseNI	ACTGG	7 cut(s)	333, 368, 847, 1567, 2030, 2528, 3221
BseRI	GAGGAG	1 cut(s)	2249
BseSI	GKGCMC	2 cut(s)	1566, 1574
BseYI	CCCAGC	3 cut(s)	520, 2480, 3044
BsgI	GTGCAG	2 cut(s)	68, 1423
Bsh1236I	CGCG	2 cut(s)	77, 1948
BshFI	GGCC	5 cut(s)	64, 399, 2265, 2428, 2784
BsiHKAI	GWGCWC	5 cut(s)	150, 1566, 1574, 1859, 2649
BsiHKCI	CYCGRG	1 cut(s)	2363
BsiSI	CCGG	2 cut(s)	2718, 2912
BslFI	GGGAC	7 cut(s)	54, 122, 136, 224, 355, 502, 2555
BslI	CCNNNNNNNGG	8 cut(s)	106, 164, 484, 714, 823, 1915, 2091, 2717
BsmAI	GTCTC	6 cut(s)	11, 664, 1188, 1577, 2525, 3362
BsmBI	CGTCTC	2 cut(s)	11, 3362
BsmFI	GGGAC	7 cut(s)	54, 122, 136, 224, 355, 502, 2555
BsmI	GAATGC	1 cut(s)	3081
BsnI	GGCC	5 cut(s)	64, 399, 2265, 2428, 2784
BsoBI	CYCGRG	1 cut(s)	2363
Bsp1286I	GDGCHC	5 cut(s)	150, 1566, 1574, 1859, 2649
Bsp1720I	GCTNAGC	3 cut(s)	774, 1523, 2766
Bsp19I	CCATGG	1 cut(s)	317
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	8 cut(s)	373, 694, 1012, 1444, 1988, 2706, 2803, 3218
BspANI	GGCC	5 cut(s)	64, 399, 2265, 2428, 2784
BspFNI	CGCG	2 cut(s)	77, 1948
BspHI	TCATGA	3 cut(s)	925, 1579, 1839
BspLI	GGNNCC	5 cut(s)	71, 1109, 1168, 1907, 2744
BspMAI	CTGCAG	4 cut(s)	2782, 3343, 3420, 3427
BspMI	ACCTGC	4 cut(s)	654, 911, 1395, 2057
BspOI	GCTAGC	2 cut(s)	1551, 2330
BspQI	GCTCTTC	2 cut(s)	2055, 2631
BspTI	CTTAAG	1 cut(s)	3280
BsrBI	CCGCTC	1 cut(s)	2708
BsrDI	GCAATG	4 cut(s)	2068, 2494, 3309, 3609
BsrFI	RCCGGY	1 cut(s)	2717
BsrI	ACTGG	7 cut(s)	333, 368, 847, 1567, 2030, 2528, 3221
BssAI	RCCGGY	1 cut(s)	2717
BssECI	CCNNGG	9 cut(s)	65, 317, 462, 613, 708, 1103, 2364, 2669, 3514
BssT1I	CCWWGG	5 cut(s)	317, 462, 708, 1103, 2669
Bst2UI	CCWGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
Bst6I	CTCTTC	8 cut(s)	17, 270, 1581, 1817, 2055, 2631, 3003, 3188
BstAFI	CTTAAG	1 cut(s)	3280
BstAPI	GCANNNNNTGC	1 cut(s)	3415
BstDSI	CCRYGG	2 cut(s)	65, 317
BstENI	CCTNNNNNAGG	2 cut(s)	162, 2089
BstFNI	CGCG	2 cut(s)	77, 1948
BstHHI	GCGC	2 cut(s)	2241, 3614
BstMAI	GTCTC	6 cut(s)	11, 664, 1188, 1577, 2525, 3362
BstNI	CCWGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
BstNSI	RCATGY	3 cut(s)	1535, 2725, 2774
BstSCI	CCNGG	5 cut(s)	1075, 1956, 2575, 2599, 3404
BstSFI	CTRYAG	6 cut(s)	2001, 2778, 3339, 3416, 3423, 3544
BstSLI	GKGCMC	2 cut(s)	1566, 1574
BstUI	CGCG	2 cut(s)	77, 1948
BstV2I	GAAGAC	2 cut(s)	447, 515
BstX2I	RGATCY	5 cut(s)	69, 559, 1166, 2736, 2742
BstYI	RGATCY	5 cut(s)	69, 559, 1166, 2736, 2742
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	5 cut(s)	64, 399, 2265, 2428, 2784
BtgI	CCRYGG	2 cut(s)	65, 317
BtgZI	GCGATG	2 cut(s)	1892, 2813
BtsI	GCAGTG	2 cut(s)	3256, 3336
BtuMI	TCGCGA	1 cut(s)	77
BveI	ACCTGC	4 cut(s)	654, 911, 1395, 2057
CaiI	CAGNNNCTG	1 cut(s)	193
CciI	TCATGA	3 cut(s)	925, 1579, 1839
CfoI	GCGC	2 cut(s)	2241, 3614
Cfr10I	RCCGGY	1 cut(s)	2717
Cfr13I	GGNCC	3 cut(s)	155, 1107, 2094
CsiI	ACCWGGT	1 cut(s)	1075
Csp6I	GTAC	8 cut(s)	291, 313, 1024, 1218, 1386, 3224, 3503, 3585
CviQI	GTAC	8 cut(s)	291, 313, 1024, 1218, 1386, 3224, 3503, 3585
DraI	TTTAAA	1 cut(s)	1092
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	2 cut(s)	2263, 2426
Eam1104I	CTCTTC	8 cut(s)	17, 270, 1581, 1817, 2055, 2631, 3003, 3188
EarI	CTCTTC	8 cut(s)	17, 270, 1581, 1817, 2055, 2631, 3003, 3188
EciI	GGCGGA	2 cut(s)	709, 3207
Ecl136II	GAGCTC	2 cut(s)	1857, 2647
Eco130I	CCWWGG	5 cut(s)	317, 462, 708, 1103, 2669
Eco24I	GRGCYC	2 cut(s)	1859, 2649
Eco32I	GATATC	1 cut(s)	2919
Eco47I	GGWCC	3 cut(s)	155, 1107, 2094
Eco53kI	GAGCTC	2 cut(s)	1857, 2647
Eco57I	CTGAAG	6 cut(s)	1110, 1932, 2676, 3212, 3451, 3606
Eco88I	CYCGRG	1 cut(s)	2363
EcoICRI	GAGCTC	2 cut(s)	1857, 2647
EcoNI	CCTNNNNNAGG	2 cut(s)	162, 2089
EcoO109I	RGGNCCY	1 cut(s)	1107
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	5 cut(s)	1075, 1956, 2575, 2599, 3404
EcoRV	GATATC	1 cut(s)	2919
EcoT14I	CCWWGG	5 cut(s)	317, 462, 708, 1103, 2669
EcoT22I	ATGCAT	1 cut(s)	249
EcoT38I	GRGCYC	2 cut(s)	1859, 2649
ErhI	CCWWGG	5 cut(s)	317, 462, 708, 1103, 2669
Esp3I	CGTCTC	2 cut(s)	11, 3362
FalI	AAGNNNNNCTT	4 cut(s)	429, 461, 2101, 2133
FaqI	GGGAC	7 cut(s)	54, 122, 136, 224, 355, 502, 2555
FauI	CCCGC	1 cut(s)	380
FauNDI	CATATG	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	1663
FriOI	GRGCYC	2 cut(s)	1859, 2649
FspBI	CTAG	5 cut(s)	278, 1548, 2327, 2670, 2924
GlaI	GCGC	2 cut(s)	2240, 3613
GsaI	CCCAGC	3 cut(s)	524, 2484, 3048
GsuI	CTGGAG	5 cut(s)	225, 1421, 2559, 2622, 2663
HaeIII	GGCC	5 cut(s)	64, 399, 2265, 2428, 2784
HapII	CCGG	2 cut(s)	2718, 2912
HhaI	GCGC	2 cut(s)	2241, 3614
Hin6I	GCGC	2 cut(s)	2239, 3612
HinP1I	GCGC	2 cut(s)	2239, 3612
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	2718, 2912
Hpy166II	GTNNAC	7 cut(s)	6, 724, 1460, 1564, 1572, 1664, 3054
Hpy8I	GTNNAC	7 cut(s)	6, 724, 1460, 1564, 1572, 1664, 3054
Hpy99I	CGWCG	3 cut(s)	155, 864, 1074
HpyCH4IV	ACGT	5 cut(s)	728, 2552, 3226, 3358, 3497
HpySE526I	ACGT	5 cut(s)	728, 2552, 3226, 3358, 3497
HspAI	GCGC	2 cut(s)	2239, 3612
LguI	GCTCTTC	2 cut(s)	2055, 2631
MabI	ACCWGGT	1 cut(s)	1075
MaeI	CTAG	5 cut(s)	278, 1548, 2327, 2670, 2924
MaeII	ACGT	5 cut(s)	728, 2552, 3226, 3358, 3497
MaeIII	GTNAC	7 cut(s)	26, 829, 1211, 2519, 2553, 3026, 3481
MbiI	CCGCTC	1 cut(s)	2708
MfeI	CAATTG	3 cut(s)	622, 2852, 3269
MflI	RGATCY	5 cut(s)	69, 559, 1166, 2736, 2742
MhlI	GDGCHC	5 cut(s)	150, 1566, 1574, 1859, 2649
MlsI	TGGCCA	2 cut(s)	2265, 2428
MluNI	TGGCCA	2 cut(s)	2265, 2428
MlyI	GAGTC	5 cut(s)	88, 118, 1339, 2377, 2386
MmeI	TCCRAC	5 cut(s)	819, 883, 2378, 2448, 2735
Mox20I	TGGCCA	2 cut(s)	2265, 2428
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	3168
MscI	TGGCCA	2 cut(s)	2265, 2428
MslI	CAYNNNNRTG	4 cut(s)	90, 930, 1844, 2441
Msp20I	TGGCCA	2 cut(s)	2265, 2428
MspA1I	CMGCKG	2 cut(s)	1253, 1444
MspCI	CTTAAG	1 cut(s)	3280
MspI	CCGG	2 cut(s)	2718, 2912
MspR9I	CCNGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
MunI	CAATTG	3 cut(s)	622, 2852, 3269
Mva1269I	GAATGC	1 cut(s)	3081
MvaI	CCWGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
MvnI	CGCG	2 cut(s)	77, 1948
NcoI	CCATGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	356
NheI	GCTAGC	2 cut(s)	1547, 2326
NlaIV	GGNNCC	5 cut(s)	71, 1109, 1168, 1907, 2744
NmuCI	GTSAC	3 cut(s)	1211, 2519, 3481
NruI	TCGCGA	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	249
NspI	RCATGY	3 cut(s)	1535, 2725, 2774
OliI	CACNNNNGTG	1 cut(s)	90
PaeI	GCATGC	2 cut(s)	2725, 2774
PagI	TCATGA	3 cut(s)	925, 1579, 1839
PciSI	GCTCTTC	2 cut(s)	2055, 2631
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	3081
PdmI	GAANNNNTTC	1 cut(s)	3168
PflFI	GACNNNGTC	4 cut(s)	446, 514, 543, 1835
PflMI	CCANNNNNTGG	1 cut(s)	714
PleI	GAGTC	5 cut(s)	87, 118, 1339, 2377, 2386
PpsI	GAGTC	5 cut(s)	87, 118, 1339, 2377, 2386
PpuMI	RGGWCCY	1 cut(s)	1107
Psp124BI	GAGCTC	2 cut(s)	1859, 2649
Psp5II	RGGWCCY	1 cut(s)	1107
Psp6I	CCWGG	5 cut(s)	1075, 1956, 2575, 2599, 3404
PspFI	CCCAGC	3 cut(s)	520, 2480, 3044
PspGI	CCWGG	5 cut(s)	1075, 1956, 2575, 2599, 3404
PspN4I	GGNNCC	5 cut(s)	71, 1109, 1168, 1907, 2744
PspPI	GGNCC	3 cut(s)	155, 1107, 2094
PspPPI	RGGWCCY	1 cut(s)	1107
PstI	CTGCAG	4 cut(s)	2782, 3343, 3420, 3427
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	5 cut(s)	69, 559, 1166, 2736, 2742
PsyI	GACNNNGTC	4 cut(s)	446, 514, 543, 1835
PvuII	CAGCTG	1 cut(s)	1253
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	8 cut(s)	292, 314, 1025, 1219, 1387, 3225, 3504, 3586
RsaNI	GTAC	8 cut(s)	291, 313, 1024, 1218, 1386, 3224, 3503, 3585
RseI	CAYNNNNRTG	4 cut(s)	90, 930, 1844, 2441
SacI	GAGCTC	2 cut(s)	1859, 2649
SapI	GCTCTTC	2 cut(s)	2055, 2631
Sau96I	GGNCC	3 cut(s)	155, 1107, 2094
ScaI	AGTACT	2 cut(s)	1025, 1219
SchI	GAGTC	5 cut(s)	88, 118, 1339, 2377, 2386
ScrFI	CCNGG	5 cut(s)	1077, 1958, 2577, 2601, 3406
SduI	GDGCHC	5 cut(s)	150, 1566, 1574, 1859, 2649
SexAI	ACCWGGT	1 cut(s)	1075
SfcI	CTRYAG	6 cut(s)	2001, 2778, 3339, 3416, 3423, 3544
SinI	GGWCC	3 cut(s)	155, 1107, 2094
SmiMI	CAYNNNNRTG	4 cut(s)	90, 930, 1844, 2441
SmlI	CTYRAG	4 cut(s)	1221, 1286, 3065, 3280
SmoI	CTYRAG	4 cut(s)	1221, 1286, 3065, 3280
SphI	GCATGC	2 cut(s)	2725, 2774
SsiI	CCGC	8 cut(s)	373, 694, 1012, 1444, 1988, 2706, 2803, 3218
SspI	AATATT	3 cut(s)	1374, 1978, 2476
SspMI	CTAG	5 cut(s)	278, 1548, 2327, 2670, 2924
SstI	GAGCTC	2 cut(s)	1859, 2649
StyD4I	CCNGG	5 cut(s)	1075, 1956, 2575, 2599, 3404
StyI	CCWWGG	5 cut(s)	317, 462, 708, 1103, 2669
TaiI	ACGT	5 cut(s)	731, 2555, 3229, 3361, 3500
TaqI	TCGA	6 cut(s)	15, 141, 1069, 2053, 2862, 3652
TaqII	GACCGA	1 cut(s)	627
TatI	WGTACW	3 cut(s)	1023, 1217, 3584
TauI	GCSGC	1 cut(s)	2708
TseFI	GTSAC	3 cut(s)	1211, 2519, 3481
Tsp45I	GTSAC	3 cut(s)	1211, 2519, 3481
TspGWI	ACGGA	4 cut(s)	467, 806, 1282, 1580
Tth111I	GACNNNGTC	4 cut(s)	446, 514, 543, 1835
Van91I	CCANNNNNTGG	1 cut(s)	714
Vha464I	CTTAAG	1 cut(s)	3280
VneI	GTGCAC	2 cut(s)	1562, 1570
VpaK11BI	GGWCC	3 cut(s)	155, 1107, 2094
XagI	CCTNNNNNAGG	2 cut(s)	162, 2089
XapI	RAATTY	3 cut(s)	846, 1318, 2101
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	3 cut(s)	1535, 2725, 2774
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1744, 3361
XmaJI	CCTAGG	1 cut(s)	2669
XmiI	GTMKAC	1 cut(s)	1663
XmnI	GAANNNNTTC	1 cut(s)	3168
XspI	CTAG	5 cut(s)	278, 1548, 2327, 2670, 2924
ZrmI	AGTACT	2 cut(s)	1025, 1219
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.