Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

5033712 .. 5039178

Gene Structure 5467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3660 bp

ATGTTGACCAAGTTCGAGACGAAGAGTAATAGAGTGAAGGGACTGAGCTTCCACACTAAGAGGCCGTGGATCCTCGCGAGTCTGCACAGCGGTGTGATCCAGCTATGGGACTACCGTATGGGGACTCTCATTGATCGATTCGATGAGCACGACGGCCCTGTTCGCGGTGTTCATTTCCACAAATCTCAGCCTCTCTTTGTGTCTGGAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTTGGGCATCTAGATTATATCCGAACTGTGCAATTTCACCATGAGTACCCATGGATTGTAAGTGCCAGTGATGACCAGACTATTCGTATATGGAACTGGCAGTCGCGCACTTGTATTTCAGTTTTGACAGGCCACAATCATTATGTTATGTGTGCCTCATTCCATCCTAAAGAAGACCTTGTCGTATCTGCCTCCTTGGATCAGACTGTCCGTGTTTGGGATATTGGTTCTCTGAAAAAGAAGTCTGTGTCCCCTGCGGATGACATACTGCGACTAAGTCAGATGAACACAGATCTTTTTGGTGGTGTTGATGCTGTTGTTAAGTATGTCTTGGAAGGGCATGACCGAGGTGTCAATTGGGCTTCATTCCACCCCAACCTGCCCCTCATTGTCTCAGGAGCAGACGATCGCCAAGTTAAATTGTGGCGGATGAATGATACTAAGGCTTGGGAAGTGGACACGTTGAGAGGTCACATGAATAATGTTTCATGTGTTATGTTTCATGCTAAGCAGGATATAATCGTATCCAACTCAGAGGACAAAAGTATCCGTGTCTGGGATGTGACAAAGCGAACTGGAATTCAAACTTTCCGACGAGAGCATGATCGCTTTTGGATTCTTTCATCTCACCCTGAAATGAATCTATTAGCAGCAGGTCATGACAGTGGGATGATCGTCTTTAAGTTAGAGAGGGAAAGACCGGCCTTTGCCGTCAGTGGTGATTCTCTGTTCTATGCTAAGGACCGCTTTTTGAAGTTCTACGAGTTTTCAACCCAGAGAGATACACAAGTTATTCCAATTCGACGACCTGGTTCTATCACTTTAAATCAAAGTCCAAGGACCCTTTCTTACAGTCCTTCAGAAAATGCGGTTCTTGTTTGCTCAGACTTGGACGGGGGATCCTATGAGTTGTATTTCATACCCAGGGACAGCATTACTAGGGGTGACAGTGCGCAAGATGCTAAGAGAGGTGTTGGTGGTTCAGCTGTGTTTGTAGCACGGAATAGGTTTGCTGTGCTTGAGAAAAGCACAAACTCTGTCCTGGTAAAGAATTTGAGGAATGAGGTTGTTAAAAAGACTCCCCTTCCTTTTGCTGCTGATGCAATATTCTACGCTGGAACAGGTAATTTGCTGTGTAGGTCAGAGGACAAAGTGTTTATATTTGATCTCCAGCAGAGGACTGTTCTTGGTGAACTTCAAACCCCCTTTGTCAAGTATGTTGTTTGGTCTAATGACCTGGAAAGTATTGCCTTGCTCAGCAAACATGCCATAATTATTGCTAGCAAGAGGCTTGTGCACCAGTGCACTCTTCATGAGACAATCCGTGTAAAGAGTGGTGGTTGGGATGACAACGGTGTTTTCATTTATTCAACTCTGAATCACATTAAATATTGTCTACCTAATGGAGATAGTGGAATAATCAGAACGCTTGATGTTCCTATCTACATTACGAAAGTTTCTGCAAACACTATCTTTTGCTTGGATCGGGATGGGAAAAATAAGGCCATAGTTATTGATGCCACAGAATACATCTTCAAGTTATCCCTTTTGAAGAAGAAATATGACAATGTTATGAGCATGATAAGGAACTCACAGCTCTGTGGGCAGGCGATGATAGCTTATCTGCAACAGAAGGGGTTCCCCGAAGTTGCCCTCCATTTTGTGAAAGATGAAAGAACTCGATTCAATCTGGCATTAGAGAGTGGGAATATTCAAATTGCGGTTGAATCTGCCACAGCAATTGATGAAAAAGATTACTGGTATAGGTTGGGTGTGGAGGCTCTTCGACAGGGCAATGCAGGTATTGTAGAGTTTGCCTACCAGAGGACCAAAAATTTTGAAAGGCTGTCTTTCCTTTATCTCATAAATGGTAATATGCAGAAACTGTCCAAGATGCTGAAAATTGCTGAGGTCAAGAATGATGTCATGGGTCAGTTTCACAATGCACTGTATCTGGGGAATGTTGAGGAGCGCATTAAGATATTGGAGAATGTTGGTCACTTGCCCCTTGCTTATATTACAGCAAAAACTCATGGGCTGCATGATGTTGCCGAAAGGCTAGCAGCTGAGTTGGGGGATAATCTTCCAACTTTGCCTGAGGGTAAAGCACCACCAACTCTTTTGACTCCCCCAACACCAATCATGTGTGGTAGTGATTGGCCACTTCTCAGAGTAATGAGAGGTATATTTGAAGGTGGGTTGGATAATATCGGCAGGGGAGCTGTGGATGAAGAGGATGAGGCTGTTGATGGTGACTGGGGTGAGGAGCTGGACATGGTTGATGTTGATGGGTTACAAAATGGAGTTGTCCTTCCAGGTTTGGAAGGTGAGGAAGTGCCTGGAGAAGATGATGGAGAGGGAGGATGGGACCTTGAAGATTTGGAGCTCCCCCCTGAAGCTGACACACCTAGGACTTCTGTTAATACTCATTCATCAGTTTTTGTTGCTCCAACTACTGGCATGCCTGTAAGCCAGATTTGGATCCAGAGATCATCTCTTGCCGCTGAGCATGCCGCTGCAGGCCATTTTGATACTGCGATGCGGTTGCTGAACAGGCAACTTGGGATTAAAAACTTCACTCCTTTGAGGCAATTGTTCCTCGATCTTCACTCTGGAAGCCACAGCTATCTACGGGCATTTTCGTCTGCTCCAGTGATATCATTAGCAGTTGAGCGTGGGTGGAATGAAACTACCACGCCAAATGTCAGAAACCCACCAGCACTTGTGTTCAATTTTTCTCAGTTGGAAGAGAAACTCAAAGCTGGTTACAAGGCTACAACTGCTGGGAAGTTCACTGAAGCTCTCAGGCTCTTTCTTAGCATTCTTCATACAATTCCTTTGATTGTTGTTGATTCAAGGAGAGAAGTTGATGAAGTTAAGGAGTTAATTGTAATAGTCAAGGAATATGTTCTGGGATTGCAAATGGAGCTGAAGAGAAGGGAAATGAAAGATAATCCAGTACGTCAGCAGGAGCTTGCAGCTTATTTTACACACTGCAATCTTCAATTGCCTCACTTAAGGCTTGCTTTGCTTAATGCAATGACAGTTTGCTACAAGGCAAAGAACCTTGCCACTGCAGCTAACTTTGCCAGACGGCTATTGGAGACGAACCCCACCGTTGAGAGTCAGGCAAAGTTACCCAGGCAAGTGCTGCAGGCGGCAGAGAAGAATATGACTGATGCTTCTCAACTGAACTATGACTTCAGAAATCCCTTTGTGACTTGTGGGGCAACATATGTACCAATTTACCGAGGACAGAAGGACGTCTCTTGCCCTTACTGTAGCTCACGGTTTGTGCCAAGCCAAGAAGGGAAGCTCTGTACTGTTTGTGATCTTGCAGTGGTTGGTGCAGATGCTTCGGGGTTGCTATGTTCTCCATCTCAGATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

1219

Amino Acids

137.08

Weight (kDa)

6.77

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	2 - 79	3e-09	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	3 - 90	2.5e-10	WDR5 beta-propeller domain
WDR55	PF24796	3 - 168	6.2e-13	WDR55
Beta-prop_WDR3_1st	PF25173	4 - 164	2.4e-32	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 162	9.8e-16	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	6 - 127	1.5e-17	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	13 - 256	1.4e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	15 - 82	8e-06	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	25 - 122	2e-07	G protein beta WD-40 repeat protein
WD40	PF00400	42 - 79	5e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	48 - 168	6.4e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	49 - 166	7.6e-17	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	50 - 166	1.2e-30	WDR5 beta-propeller domain
WD40_Prp19	PF24814	60 - 168	4.7e-21	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	63 - 167	1.6e-08	TEP-1 second beta-propeller
Beta-prop_SCAP	PF24017	66 - 166	7.4e-06	SCAP Beta-propeller
WD40	PF00400	84 - 121	3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	88 - 163	6e-09	WDR3 second beta-propeller domain
EIF3I	PF24805	88 - 165	4.1e-06	EIF3I
Beta-prop_EIPR1	PF23609	91 - 162	2.8e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	96 - 169	4.4e-13	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	108 - 169	7.7e-13	THOC3 beta-propeller domain
WD40	PF00400	126 - 163	1.1e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	183 - 304	2e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	193 - 317	2e-19	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	194 - 314	3.5e-18	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	195 - 307	8.9e-22	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	197 - 290	1.3e-07	TEP-1 second beta-propeller
WD40	PF00400	198 - 231	9.9e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	198 - 288	4.5e-06	G protein beta WD-40 repeat protein
EIF3I	PF24805	199 - 287	5.5e-07	EIF3I
Beta-prop_WDR3_2nd	PF25172	201 - 316	1.5e-09	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	202 - 303	3e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	205 - 316	1.3e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	206 - 316	3.3e-15	THOC3 beta-propeller domain
WDR55	PF24796	207 - 315	4.2e-10	WDR55
WD40_WDHD1_1st	PF24817	211 - 286	4.2e-10	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	212 - 318	2.4e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	223 - 317	1.2e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	241 - 276	2e-06	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	340 - 584	1.8e-67	COPA/B second beta-propeller
TPR_COPA_B	PF23953	613 - 773	7.7e-20	COPA/B TPR domain
COPI_C	PF06957	816 - 1219	5.5e-169	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AatII	GACGTC	1 cut(s)	3534
Acc16I	TGCGCA	1 cut(s)	1221
Acc36I	ACCTGC	3 cut(s)	654, 911, 2057
AccB7I	CCANNNNNTGG	1 cut(s)	2723
AccI	GTMKAC	1 cut(s)	1663
AccII	CGCG	3 cut(s)	77, 165, 373
AclWI	GGATC	9 cut(s)	64, 77, 91, 474, 1161, 1174, 1758, 2743, 2756
AcoI	YGGCCR	1 cut(s)	2426
AcsI	RAATTY	3 cut(s)	846, 1318, 2101
AcuI	CTGAAG	5 cut(s)	1110, 2682, 3084, 3218, 3454
AcyI	GRCGYC	1 cut(s)	3531
AfaI	GTAC	4 cut(s)	314, 3228, 3507, 3589
AfiI	CCNNNNNNNGG	6 cut(s)	106, 164, 484, 823, 2091, 2723
AflII	CTTAAG	1 cut(s)	3283
AflIII	ACRYGT	1 cut(s)	726
AjnI	CCWGG	7 cut(s)	1075, 1190, 1308, 1503, 2581, 2605, 3407
AjuI	GAANNNNNNNTTGG	2 cut(s)	1096, 1128
AleI	CACNNNNGTG	1 cut(s)	90
Alw21I	GWGCWC	4 cut(s)	150, 1566, 1574, 2655
Alw26I	GTCTC	5 cut(s)	11, 664, 1577, 3365, 3538
Alw44I	GTGCAC	2 cut(s)	1562, 1570
AlwI	GGATC	9 cut(s)	64, 77, 91, 474, 1161, 1174, 1758, 2743, 2756
AlwNI	CAGNNNCTG	1 cut(s)	2152
AoxI	GGCC	7 cut(s)	62, 154, 397, 969, 1770, 2426, 2788
ApaLI	GTGCAC	2 cut(s)	1562, 1570
ApeKI	GCWGC	8 cut(s)	917, 1361, 2305, 2330, 2783, 3245, 3344, 3418
ApoI	RAATTY	3 cut(s)	846, 1318, 2101
Asp700I	GAANNNNTTC	2 cut(s)	1904, 3174
AspA2I	CCTAGG	1 cut(s)	2675
AspLEI	GCGC	3 cut(s)	375, 1222, 2241
AspS9I	GGNCC	5 cut(s)	155, 1009, 1107, 2094, 2635
AsuHPI	GGTGA	8 cut(s)	296, 887, 998, 1223, 1469, 2531, 2540, 2606
AsuNHI	GCTAGC	2 cut(s)	1547, 2326
AvaII	GGWCC	4 cut(s)	1009, 1107, 2094, 2635
AvrII	CCTAGG	1 cut(s)	2675
AxyI	CCTNAGG	1 cut(s)	2364
BaeGI	GKGCMC	2 cut(s)	1566, 1574
BaeI	ACNNNNGTAYC	6 cut(s)	796, 829, 1041, 1074, 3489, 3522
BalI	TGGCCA	1 cut(s)	2428
BamHI	GGATCC	3 cut(s)	69, 1166, 2748
BanII	GRGCYC	1 cut(s)	2655
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	4 cut(s)	150, 1566, 1574, 2655
BbvCI	CCTCAGC	1 cut(s)	2175
BbvI	GCAGC	8 cut(s)	929, 1348, 2292, 2342, 2770, 3257, 3356, 3405
BccI	CCATC	7 cut(s)	438, 1751, 2510, 2549, 2612, 2625, 3652
BceAI	ACGGC	4 cut(s)	49, 169, 962, 3377
BcgI	CGANNNNNNTGC	4 cut(s)	2794, 2828, 3606, 3640
BciT130I	CCWGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
BciVI	GTATCC	2 cut(s)	802, 824
BcoDI	GTCTC	5 cut(s)	11, 664, 1577, 3365, 3538
BfaI	CTAG	5 cut(s)	278, 1206, 1548, 2327, 2676
BfmI	CTRYAG	4 cut(s)	2784, 3342, 3419, 3547
BfrI	CTTAAG	1 cut(s)	3283
BfuAI	ACCTGC	3 cut(s)	654, 911, 2057
BfuI	GTATCC	2 cut(s)	802, 824
BglII	AGATCT	1 cut(s)	559
BlnI	CCTAGG	1 cut(s)	2675
BlpI	GCTNAGC	3 cut(s)	774, 1523, 2772
Bme1390I	CCNGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
Bme18I	GGWCC	4 cut(s)	1009, 1107, 2094, 2635
BmgT120I	GGNCC	5 cut(s)	155, 1009, 1107, 2094, 2635
BmiI	GGNNCC	6 cut(s)	71, 1109, 1168, 1907, 2636, 2750
BmrFI	CCNGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
BmrI	ACTGGG	1 cut(s)	2533
BmtI	GCTAGC	2 cut(s)	1551, 2330
BmuI	ACTGGG	1 cut(s)	2533
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	2746, 2778
BpmI	CTGGAG	4 cut(s)	225, 1421, 2628, 2901
Bpu10I	CCTNAGC	2 cut(s)	1005, 2175
Bpu1102I	GCTNAGC	3 cut(s)	774, 1523, 2772
BpuEI	CTTGAG	1 cut(s)	1307
Bsa29I	ATCGAT	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	2747
BsaHI	GRCGYC	1 cut(s)	3531
Bsc4I	CCNNNNNNNGG	6 cut(s)	106, 164, 484, 823, 2091, 2723
Bse118I	RCCGGY	1 cut(s)	967
Bse1I	ACTGG	9 cut(s)	333, 368, 847, 1567, 2030, 2528, 2728, 2918, 3224
Bse21I	CCTNAGG	1 cut(s)	2364
Bse3DI	GCAATG	2 cut(s)	2068, 3312
Bse8I	GATNNNNATC	1 cut(s)	2747
BseBI	CCWGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
BseCI	ATCGAT	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	2747
BseLI	CCNNNNNNNGG	6 cut(s)	106, 164, 484, 823, 2091, 2723
BseMI	GCAATG	2 cut(s)	2068, 3312
BseNI	ACTGG	9 cut(s)	333, 368, 847, 1567, 2030, 2528, 2728, 2918, 3224
BseRI	GAGGAG	2 cut(s)	2249, 2546
BseSI	GKGCMC	2 cut(s)	1566, 1574
BseXI	GCAGC	8 cut(s)	929, 1348, 2292, 2342, 2770, 3257, 3356, 3405
BseYI	CCCAGC	1 cut(s)	3050
BsgI	GTGCAG	2 cut(s)	68, 3636
Bsh1236I	CGCG	3 cut(s)	77, 165, 373
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	7 cut(s)	64, 156, 399, 971, 1772, 2428, 2790
BshVI	ATCGAT	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	4 cut(s)	150, 1566, 1574, 2655
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	7 cut(s)	54, 122, 136, 224, 502, 1208, 2648
BslI	CCNNNNNNNGG	6 cut(s)	106, 164, 484, 823, 2091, 2723
BsmAI	GTCTC	5 cut(s)	11, 664, 1577, 3365, 3538
BsmBI	CGTCTC	3 cut(s)	11, 3365, 3538
BsmFI	GGGAC	7 cut(s)	54, 122, 136, 224, 502, 1208, 2648
BsmI	GAATGC	1 cut(s)	3087
BsnI	GGCC	7 cut(s)	64, 156, 399, 971, 1772, 2428, 2790
Bsp1286I	GDGCHC	4 cut(s)	150, 1566, 1574, 2655
Bsp1720I	GCTNAGC	3 cut(s)	774, 1523, 2772
Bsp19I	CCATGG	1 cut(s)	317
Bsp68I	TCGCGA	1 cut(s)	77
BspANI	GGCC	7 cut(s)	64, 156, 399, 971, 1772, 2428, 2790
BspDI	ATCGAT	1 cut(s)	136
BspFNI	CGCG	3 cut(s)	77, 165, 373
BspHI	TCATGA	2 cut(s)	925, 1579
BspLI	GGNNCC	6 cut(s)	71, 1109, 1168, 1907, 2636, 2750
BspMAI	CTGCAG	3 cut(s)	2788, 3346, 3423
BspMI	ACCTGC	3 cut(s)	654, 911, 2057
BspOI	GCTAGC	2 cut(s)	1551, 2330
BspPI	GGATC	9 cut(s)	64, 77, 91, 474, 1161, 1174, 1758, 2743, 2756
BspQI	GCTCTTC	1 cut(s)	2055
BspTI	CTTAAG	1 cut(s)	3283
BsrDI	GCAATG	2 cut(s)	2068, 3312
BsrFI	RCCGGY	1 cut(s)	967
BsrI	ACTGG	9 cut(s)	333, 368, 847, 1567, 2030, 2528, 2728, 2918, 3224
BssAI	RCCGGY	1 cut(s)	967
BssNI	GRCGYC	1 cut(s)	3531
BssT1I	CCWWGG	4 cut(s)	317, 462, 1103, 2675
Bst2UI	CCWGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
Bst6I	CTCTTC	7 cut(s)	17, 270, 1581, 2055, 2493, 3009, 3194
BstACI	GRCGYC	1 cut(s)	3531
BstAFI	CTTAAG	1 cut(s)	3283
BstAPI	GCANNNNNTGC	1 cut(s)	3418
BstC8I	GCNNGC	9 cut(s)	1549, 1875, 2328, 2729, 2778, 2788, 3243, 3291, 3423
BstDSI	CCRYGG	2 cut(s)	65, 317
BstENI	CCTNNNNNAGG	1 cut(s)	2089
BstFNI	CGCG	3 cut(s)	77, 165, 373
BstHHI	GCGC	3 cut(s)	375, 1222, 2241
BstMAI	GTCTC	5 cut(s)	11, 664, 1577, 3365, 3538
BstMCI	CGRYCG	1 cut(s)	676
BstNI	CCWGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
BstNSI	RCATGY	3 cut(s)	1535, 2731, 2780
BstSCI	CCNGG	7 cut(s)	1075, 1190, 1308, 1503, 2581, 2605, 3407
BstSFI	CTRYAG	4 cut(s)	2784, 3342, 3419, 3547
BstSLI	GKGCMC	2 cut(s)	1566, 1574
BstUI	CGCG	3 cut(s)	77, 165, 373
BstV1I	GCAGC	8 cut(s)	929, 1348, 2292, 2342, 2770, 3257, 3356, 3405
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	4 cut(s)	69, 559, 1166, 2748
BstYI	RGATCY	4 cut(s)	69, 559, 1166, 2748
Bsu15I	ATCGAT	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	2364
BsuI	GTATCC	2 cut(s)	802, 824
BsuRI	GGCC	7 cut(s)	64, 156, 399, 971, 1772, 2428, 2790
BsuTUI	ATCGAT	1 cut(s)	136
BtgI	CCRYGG	2 cut(s)	65, 317
BtgZI	GCGATG	2 cut(s)	1892, 2819
BtsI	GCAGTG	3 cut(s)	3259, 3339, 3612
BtuMI	TCGCGA	1 cut(s)	77
BveI	ACCTGC	3 cut(s)	654, 911, 2057
Cac8I	GCNNGC	9 cut(s)	1549, 1875, 2328, 2729, 2778, 2788, 3243, 3291, 3423
CaiI	CAGNNNCTG	1 cut(s)	2152
CciI	TCATGA	2 cut(s)	925, 1579
CfoI	GCGC	3 cut(s)	375, 1222, 2241
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	5 cut(s)	155, 1009, 1107, 2094, 2635
ClaI	ATCGAT	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	1075
Csp6I	GTAC	4 cut(s)	313, 3227, 3506, 3588
CspCI	CAANNNNNGTGG	2 cut(s)	1990, 2025
CviQI	GTAC	4 cut(s)	313, 3227, 3506, 3588
DraI	TTTAAA	1 cut(s)	1092
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	2426
Eam1104I	CTCTTC	7 cut(s)	17, 270, 1581, 2055, 2493, 3009, 3194
EarI	CTCTTC	7 cut(s)	17, 270, 1581, 2055, 2493, 3009, 3194
EciI	GGCGGA	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	2653
Eco130I	CCWWGG	4 cut(s)	317, 462, 1103, 2675
Eco24I	GRGCYC	1 cut(s)	2655
Eco32I	GATATC	1 cut(s)	2925
Eco47I	GGWCC	4 cut(s)	1009, 1107, 2094, 2635
Eco53kI	GAGCTC	1 cut(s)	2653
Eco57I	CTGAAG	5 cut(s)	1110, 2682, 3084, 3218, 3454
Eco81I	CCTNAGG	1 cut(s)	2364
EcoICRI	GAGCTC	1 cut(s)	2653
EcoNI	CCTNNNNNAGG	1 cut(s)	2089
EcoO109I	RGGNCCY	2 cut(s)	1107, 2635
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	7 cut(s)	1075, 1190, 1308, 1503, 2581, 2605, 3407
EcoRV	GATATC	1 cut(s)	2925
EcoT14I	CCWWGG	4 cut(s)	317, 462, 1103, 2675
EcoT22I	ATGCAT	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	2655
ErhI	CCWWGG	4 cut(s)	317, 462, 1103, 2675
Esp3I	CGTCTC	3 cut(s)	11, 3365, 3538
FaqI	GGGAC	7 cut(s)	54, 122, 136, 224, 502, 1208, 2648
FauNDI	CATATG	1 cut(s)	3502
FblI	GTMKAC	1 cut(s)	1663
FriOI	GRGCYC	1 cut(s)	2655
FspBI	CTAG	5 cut(s)	278, 1206, 1548, 2327, 2676
FspI	TGCGCA	1 cut(s)	1221
GlaI	GCGC	3 cut(s)	374, 1221, 2240
GsaI	CCCAGC	1 cut(s)	3054
GsuI	CTGGAG	4 cut(s)	225, 1421, 2628, 2901
HaeIII	GGCC	7 cut(s)	64, 156, 399, 971, 1772, 2428, 2790
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	3 cut(s)	375, 1222, 2241
Hin1I	GRCGYC	1 cut(s)	3531
Hin6I	GCGC	3 cut(s)	373, 1220, 2239
HinP1I	GCGC	3 cut(s)	373, 1220, 2239
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	8 cut(s)	296, 887, 998, 1223, 1469, 2531, 2540, 2606
Hpy166II	GTNNAC	7 cut(s)	6, 724, 1460, 1564, 1572, 1664, 3060
Hpy8I	GTNNAC	7 cut(s)	6, 724, 1460, 1564, 1572, 1664, 3060
Hpy99I	CGWCG	3 cut(s)	155, 864, 1074
HpyCH4IV	ACGT	3 cut(s)	728, 3229, 3531
HpySE526I	ACGT	3 cut(s)	728, 3229, 3531
Hsp92I	GRCGYC	1 cut(s)	3531
HspAI	GCGC	3 cut(s)	373, 1220, 2239
LguI	GCTCTTC	1 cut(s)	2055
Lsp1109I	GCAGC	8 cut(s)	929, 1348, 2292, 2342, 2770, 3257, 3356, 3405
MabI	ACCWGGT	1 cut(s)	1075
MaeI	CTAG	5 cut(s)	278, 1206, 1548, 2327, 2676
MaeII	ACGT	3 cut(s)	728, 3229, 3531
MaeIII	GTNAC	9 cut(s)	737, 829, 1211, 2264, 2519, 2559, 3032, 3402, 3484
MfeI	CAATTG	4 cut(s)	622, 2007, 2858, 3272
MflI	RGATCY	4 cut(s)	69, 559, 1166, 2748
MhlI	GDGCHC	4 cut(s)	150, 1566, 1574, 2655
MlsI	TGGCCA	1 cut(s)	2428
MluNI	TGGCCA	1 cut(s)	2428
MlyI	GAGTC	5 cut(s)	88, 118, 1339, 2386, 3400
MmeI	TCCRAC	6 cut(s)	819, 883, 2378, 2448, 2741, 2991
Mox20I	TGGCCA	1 cut(s)	2428
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	2 cut(s)	1904, 3174
MscI	TGGCCA	1 cut(s)	2428
MslI	CAYNNNNRTG	2 cut(s)	90, 930
Msp20I	TGGCCA	1 cut(s)	2428
MspA1I	CMGCKG	5 cut(s)	90, 1253, 2333, 2771, 2783
MspCI	CTTAAG	1 cut(s)	3283
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
MunI	CAATTG	4 cut(s)	622, 2007, 2858, 3272
Mva1269I	GAATGC	1 cut(s)	3087
MvaI	CCWGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
MvnI	CGCG	3 cut(s)	77, 165, 373
NcoI	CCATGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	3502
NheI	GCTAGC	2 cut(s)	1547, 2326
NlaIV	GGNNCC	6 cut(s)	71, 1109, 1168, 1907, 2636, 2750
NmuCI	GTSAC	6 cut(s)	737, 829, 1211, 2264, 2519, 3484
NruI	TCGCGA	1 cut(s)	77
NsbI	TGCGCA	1 cut(s)	1221
NsiI	ATGCAT	1 cut(s)	249
NspI	RCATGY	3 cut(s)	1535, 2731, 2780
OliI	CACNNNNGTG	1 cut(s)	90
PaeI	GCATGC	2 cut(s)	2731, 2780
PagI	TCATGA	2 cut(s)	925, 1579
PasI	CCCWGGG	1 cut(s)	1191
PciSI	GCTCTTC	1 cut(s)	2055
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	3087
PdmI	GAANNNNTTC	2 cut(s)	1904, 3174
PfeI	GAWTC	9 cut(s)	138, 883, 907, 989, 1645, 1950, 1994, 3119, 3652
PflFI	GACNNNGTC	2 cut(s)	446, 543
PflMI	CCANNNNNTGG	1 cut(s)	2723
Ple19I	CGATCG	1 cut(s)	676
PleI	GAGTC	5 cut(s)	87, 118, 1339, 2386, 3399
PpsI	GAGTC	5 cut(s)	87, 118, 1339, 2386, 3399
PpuMI	RGGWCCY	2 cut(s)	1107, 2635
Psp124BI	GAGCTC	1 cut(s)	2655
Psp5II	RGGWCCY	2 cut(s)	1107, 2635
Psp6I	CCWGG	7 cut(s)	1075, 1190, 1308, 1503, 2581, 2605, 3407
PspFI	CCCAGC	1 cut(s)	3050
PspGI	CCWGG	7 cut(s)	1075, 1190, 1308, 1503, 2581, 2605, 3407
PspN4I	GGNNCC	6 cut(s)	71, 1109, 1168, 1907, 2636, 2750
PspPI	GGNCC	5 cut(s)	155, 1009, 1107, 2094, 2635
PspPPI	RGGWCCY	2 cut(s)	1107, 2635
PstI	CTGCAG	3 cut(s)	2788, 3346, 3423
PstNI	CAGNNNCTG	1 cut(s)	2152
PsuI	RGATCY	4 cut(s)	69, 559, 1166, 2748
PsyI	GACNNNGTC	2 cut(s)	446, 543
PvuI	CGATCG	1 cut(s)	676
PvuII	CAGCTG	2 cut(s)	1253, 2333
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	4 cut(s)	314, 3228, 3507, 3589
RsaNI	GTAC	4 cut(s)	313, 3227, 3506, 3588
RseI	CAYNNNNRTG	2 cut(s)	90, 930
SacI	GAGCTC	1 cut(s)	2655
SapI	GCTCTTC	1 cut(s)	2055
Sau96I	GGNCC	5 cut(s)	155, 1009, 1107, 2094, 2635
SchI	GAGTC	5 cut(s)	88, 118, 1339, 2386, 3400
ScrFI	CCNGG	7 cut(s)	1077, 1192, 1310, 1505, 2583, 2607, 3409
SduI	GDGCHC	4 cut(s)	150, 1566, 1574, 2655
SexAI	ACCWGGT	1 cut(s)	1075
SfcI	CTRYAG	4 cut(s)	2784, 3342, 3419, 3547
SinI	GGWCC	4 cut(s)	1009, 1107, 2094, 2635
SmiMI	CAYNNNNRTG	2 cut(s)	90, 930
SmlI	CTYRAG	2 cut(s)	1286, 3283
SmoI	CTYRAG	2 cut(s)	1286, 3283
SphI	GCATGC	2 cut(s)	2731, 2780
SspI	AATATT	3 cut(s)	1374, 1658, 1978
SspMI	CTAG	5 cut(s)	278, 1206, 1548, 2327, 2676
SstI	GAGCTC	1 cut(s)	2655
StyD4I	CCNGG	7 cut(s)	1075, 1190, 1308, 1503, 2581, 2605, 3407
StyI	CCWWGG	4 cut(s)	317, 462, 1103, 2675
TaiI	ACGT	3 cut(s)	731, 3232, 3534
TaqI	TCGA	8 cut(s)	15, 136, 141, 1069, 1948, 2053, 2868, 3655
TaqII	GACCGA	1 cut(s)	627
TatI	WGTACW	1 cut(s)	3587
TauI	GCSGC	3 cut(s)	2771, 2783, 3428
TfiI	GAWTC	9 cut(s)	138, 883, 907, 989, 1645, 1950, 1994, 3119, 3652
TseFI	GTSAC	6 cut(s)	737, 829, 1211, 2264, 2519, 3484
TseI	GCWGC	8 cut(s)	917, 1361, 2305, 2330, 2783, 3245, 3344, 3418
Tsp45I	GTSAC	6 cut(s)	737, 829, 1211, 2264, 2519, 3484
TspGWI	ACGGA	4 cut(s)	467, 806, 1282, 1580
Tth111I	GACNNNGTC	2 cut(s)	446, 543
Van91I	CCANNNNNTGG	1 cut(s)	2723
Vha464I	CTTAAG	1 cut(s)	3283
VneI	GTGCAC	2 cut(s)	1562, 1570
VpaK11BI	GGWCC	4 cut(s)	1009, 1107, 2094, 2635
XagI	CCTNNNNNAGG	1 cut(s)	2089
XapI	RAATTY	3 cut(s)	846, 1318, 2101
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	3 cut(s)	1535, 2731, 2780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3364
XmaJI	CCTAGG	1 cut(s)	2675
XmiI	GTMKAC	1 cut(s)	1663
XmnI	GAANNNNTTC	2 cut(s)	1904, 3174
XspI	CTAG	5 cut(s)	278, 1206, 1548, 2327, 2676
ZraI	GACGTC	1 cut(s)	3532
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.