The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| COPI_C | PF06957 | 11 - 142 | 1.2e-52 | Coatomer (COPI) alpha subunit C-terminus |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 21 |
| AccB1I | GGYRCC | 1 cut(s) | 21 |
| AcsI | RAATTY | 1 cut(s) | 211 |
| AfaI | GTAC | 3 cut(s) | 23, 282, 364 |
| AgsI | TTSAA | 2 cut(s) | 47, 247 |
| AluBI | AGCT | 3 cut(s) | 64, 122, 358 |
| AluI | AGCT | 3 cut(s) | 64, 122, 358 |
| Alw26I | GTCTC | 2 cut(s) | 140, 313 |
| ApeKI | GCWGC | 3 cut(s) | 119, 193, 200 |
| ApoI | RAATTY | 1 cut(s) | 211 |
| Asp718I | GGTACC | 1 cut(s) | 21 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 264, 297 |
| BanI | GGYRCC | 1 cut(s) | 21 |
| BbvI | GCAGC | 3 cut(s) | 131, 180, 187 |
| BccI | CCATC | 2 cut(s) | 129, 427 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 381, 415 |
| BcoDI | GTCTC | 2 cut(s) | 140, 313 |
| BfmI | CTRYAG | 3 cut(s) | 117, 194, 201 |
| BisI | GCNGC | 3 cut(s) | 120, 194, 201 |
| BlsI | GCNGC | 3 cut(s) | 121, 195, 202 |
| BmiI | GGNNCC | 1 cut(s) | 23 |
| BmsI | GCATC | 1 cut(s) | 385 |
| Bse3DI | GCAATG | 1 cut(s) | 87 |
| BseGI | GGATG | 1 cut(s) | 310 |
| BseMI | GCAATG | 1 cut(s) | 87 |
| BseXI | GCAGC | 3 cut(s) | 131, 180, 187 |
| BsgI | GTGCAG | 1 cut(s) | 411 |
| BshNI | GGYRCC | 1 cut(s) | 21 |
| BsmAI | GTCTC | 2 cut(s) | 140, 313 |
| Bsp143I | GATC | 1 cut(s) | 373 |
| BspLI | GGNNCC | 1 cut(s) | 23 |
| BspMAI | CTGCAG | 3 cut(s) | 121, 198, 205 |
| BspT107I | GGYRCC | 1 cut(s) | 21 |
| BsrDI | GCAATG | 1 cut(s) | 87 |
| BssMI | GATC | 1 cut(s) | 373 |
| Bst4CI | ACNGT | 4 cut(s) | 88, 160, 333, 367 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 193 |
| BstC8I | GCNNGC | 3 cut(s) | 66, 185, 198 |
| BstDEI | CTNAG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 310 |
| BstKTI | GATC | 1 cut(s) | 376 |
| BstMAI | GTCTC | 2 cut(s) | 140, 313 |
| BstMBI | GATC | 1 cut(s) | 373 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 70, 119, 128, 193 |
| BstSFI | CTRYAG | 3 cut(s) | 117, 194, 201 |
| BstV1I | GCAGC | 3 cut(s) | 131, 180, 187 |
| BtsCI | GGATG | 1 cut(s) | 310 |
| BtsI | GCAGTG | 3 cut(s) | 34, 114, 387 |
| BtsIMutI | CAGTG | 3 cut(s) | 34, 114, 387 |
| Cac8I | GCNNGC | 3 cut(s) | 66, 185, 198 |
| Csp6I | GTAC | 3 cut(s) | 22, 281, 363 |
| CviJI | RGCY | 6 cut(s) | 64, 122, 139, 200, 345, 358 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 122, 139, 200, 345, 358 |
| CviQI | GTAC | 3 cut(s) | 22, 281, 363 |
| DdeI | CTNAG | 1 cut(s) | 423 |
| DpnI | GATC | 1 cut(s) | 375 |
| DpnII | GATC | 1 cut(s) | 373 |
| FaiI | YATR | 5 cut(s) | 222, 240, 277, 279, 412 |
| FauNDI | CATATG | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 3 cut(s) | 120, 194, 201 |
| FokI | GGATG | 1 cut(s) | 317 |
| Fsp4HI | GCNGC | 3 cut(s) | 120, 194, 201 |
| GluI | GCNGC | 3 cut(s) | 120, 194, 201 |
| HindIII | AAGCTT | 1 cut(s) | 62 |
| HinfI | GANTC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 426 |
| HpyAV | CCTTC | 2 cut(s) | 295, 344 |
| HpyCH4III | ACNGT | 4 cut(s) | 88, 160, 333, 367 |
| HpyCH4V | TGCA | 7 cut(s) | 39, 80, 119, 196, 203, 380, 392 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 70, 119, 128, 193 |
| HpyF3I | CTNAG | 1 cut(s) | 423 |
| KpnI | GGTACC | 1 cut(s) | 25 |
| Kzo9I | GATC | 1 cut(s) | 373 |
| LpnPI | CCDG | 4 cut(s) | 145, 155, 169, 182 |
| Lsp1109I | GCAGC | 3 cut(s) | 131, 180, 187 |
| LweI | GCATC | 1 cut(s) | 385 |
| MaeIII | GTNAC | 2 cut(s) | 177, 259 |
| MalI | GATC | 1 cut(s) | 375 |
| MboI | GATC | 1 cut(s) | 373 |
| MboII | GAAGA | 3 cut(s) | 20, 35, 220 |
| MfeI | CAATTG | 1 cut(s) | 47 |
| MluCI | AATT | 3 cut(s) | 47, 211, 285 |
| MlyI | GAGTC | 1 cut(s) | 175 |
| MnlI | CCTC | 3 cut(s) | 63, 287, 396 |
| MseI | TTAA | 2 cut(s) | 59, 75 |
| MunI | CAATTG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 70, 119, 128, 193 |
| NdeI | CATATG | 1 cut(s) | 277 |
| NdeII | GATC | 1 cut(s) | 373 |
| NlaIV | GGNNCC | 1 cut(s) | 23 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| PkrI | GCNGC | 3 cut(s) | 121, 195, 202 |
| PleI | GAGTC | 1 cut(s) | 174 |
| PpsI | GAGTC | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 1 cut(s) | 23 |
| PstI | CTGCAG | 3 cut(s) | 121, 198, 205 |
| RsaI | GTAC | 3 cut(s) | 23, 282, 364 |
| RsaNI | GTAC | 3 cut(s) | 22, 281, 363 |
| SaqAI | TTAA | 2 cut(s) | 59, 75 |
| SatI | GCNGC | 3 cut(s) | 120, 194, 201 |
| Sau3AI | GATC | 1 cut(s) | 373 |
| SchI | GAGTC | 1 cut(s) | 175 |
| SetI | ASST | 6 cut(s) | 27, 66, 111, 124, 360, 407 |
| SfaNI | GCATC | 1 cut(s) | 385 |
| SfcI | CTRYAG | 3 cut(s) | 117, 194, 201 |
| Sse9I | AATT | 3 cut(s) | 47, 211, 285 |
| TaaI | ACNGT | 4 cut(s) | 88, 160, 333, 367 |
| TaqI | TCGA | 1 cut(s) | 401 |
| TasI | AATT | 3 cut(s) | 47, 211, 285 |
| TatI | WGTACW | 1 cut(s) | 362 |
| Tru1I | TTAA | 2 cut(s) | 59, 75 |
| Tru9I | TTAA | 2 cut(s) | 59, 75 |
| TscAI | CASTG | 3 cut(s) | 41, 121, 387 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| TseI | GCWGC | 3 cut(s) | 119, 193, 200 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 1 cut(s) | 27 |
| TspRI | CASTG | 3 cut(s) | 41, 121, 387 |
| XapI | RAATTY | 1 cut(s) | 211 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 139 |